Package check result: OK

Changes to worse in reverse depends:

Package: connector
Check: dependencies in R code
New result: WARNING
  Missing or unexported object: ‘zephyr::report_checkmate_assertions’

Package: connector
Check: examples
New result: ERROR
  Running examples in ‘connector-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: connect
  > ### Title: Connect to datasources specified in a config file
  > ### Aliases: connect
  > 
  > ### ** Examples
  > 
  > 
  > withr::local_dir(withr::local_tempdir("test", .local_envir = .GlobalEnv))
  > # Create dir for the example in tmpdir
  > dir.create("example/demo_trial/adam", recursive = TRUE)
  > 
  > # Create a config file in the example folder
  > config <- system.file("config", "_connector.yml", package = "connector")
  > 
  > # Show the raw configuration file
  > readLines(config) |>
  +   cat(sep = "\n")
  # A example of the configuration file for FS and Database
  metadata:
    trial: "demo_trial"
    root_path: "example"
    extra_class: "test2"
  
  datasources:
    - name: "adam"
      backend:
          type: "connector_fs"
          path: "{metadata.root_path}/{metadata.trial}/adam"
          extra_class: "{metadata.extra_class}"
    - name: "sdtm"
      backend:
          type: "connector_dbi"
          drv: "RSQLite::SQLite()"
          dbname: ":memory:"
  > 
  > # Connect to the datasources specified in it
  > cnts <- connect(config)
  Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
  Execution halted
  Ran 3/3 deferred expressions

Package: connector
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘Consistent-API.Rmd’ using rmarkdown
  --- finished re-building ‘Consistent-API.Rmd’
  
  --- re-building ‘connector.Rmd’ using rmarkdown
  
  Quitting from connector.Rmd:106-109 [unnamed-chunk-5]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error:
  ! 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
  ---
  Backtrace:
       ▆
    1. └─connector::connect()
    2.   ├─connector:::connect_from_config(...)
    3.   │ ├─rlang::set_names(...)
    4.   │ └─purrr::map(config$datasources, create_connection)
    5.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
    6.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
    7.   ├─connector:::filter_config(...)
    8.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
    9.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
   10.   └─connector:::assert_config(config)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Error: processing vignette 'connector.Rmd' failed with diagnostics:
  'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
  --- failed re-building ‘connector.Rmd’
  
  --- re-building ‘customize.Rmd’ using rmarkdown
  --- finished re-building ‘customize.Rmd’
  
  --- re-building ‘without-yaml.Rmd’ using rmarkdown
  --- finished re-building ‘without-yaml.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘connector.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted

Package: connector
Check: tests
New result: ERROR
    Running ‘spelling.R’ [0s/0s]
    Running ‘testthat.R’ [6s/6s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > # This file is part of the standard setup for testthat.
    > # It is recommended that you do not modify it.
    > #
    > # Where should you do additional test configuration?
    > # Learn more about the roles of various files in:
    > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
    > # * https://testthat.r-lib.org/articles/special-files.html
    > 
    > library(testthat)
    > library(connector)
    > 
    > test_check("connector")
    [ FAIL 16 | WARN 1 | SKIP 21 | PASS 140 ]
    
    ══ Skipped tests (21) ══════════════════════════════════════════════════════════
    • On CRAN (20): 'test-cnt_logger_integration.R:2:3', 'test-connector.R:11:5',
      'test-connector.R:38:5', 'test-connector.R:38:5', 'test-connector.R:38:5',
      'test-connector.R:38:5', 'test-connector.R:53:5', 'test-connector.R:53:5',
      'test-connector.R:53:5', 'test-connector.R:53:5', 'test-use_template.R:2:3',
      'test-utils_files.R:2:3', 'test-utils_files.R:2:3', 'test-utils_files.R:2:3',
      'test-utils_files.R:2:3', 'test-utils_files.R:6:3', 'test-utils_files.R:6:3',
      'test-utils_files.R:6:3', 'test-utils_files.R:6:3', 'test-utils_files.R:11:3'
    • postgres database not available (1): 'test-dbi.R:34:9'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test-cnts_datasources.R:3:3'): write_datasources works correctly ────
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. └─connector::connect(yaml_file) at test-cnts_datasources.R:3:3
      2.   ├─connector:::connect_from_config(...)
      3.   │ ├─rlang::set_names(...)
      4.   │ └─purrr::map(config$datasources, create_connection)
      5.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
      6.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
      7.   ├─connector:::filter_config(...)
      8.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
      9.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     10.   └─connector:::assert_config(config)
    ── Error ('test-connect.R:3:3'): Connect datasources to the connections for a yaml file ──
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. └─connector::connect(yaml_file) at test-connect.R:3:3
      2.   ├─connector:::connect_from_config(...)
      3.   │ ├─rlang::set_names(...)
      4.   │ └─purrr::map(config$datasources, create_connection)
      5.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
      6.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
      7.   ├─connector:::filter_config(...)
      8.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
      9.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     10.   └─connector:::assert_config(config)
    ── Failure ('test-connect.R:62:9'): yaml config parsed correctly ───────────────
    Expected `parse_config(assert_config(read_file(yaml_file_env, eval.expr = TRUE)))` to run without any conditions.
    i Actually got a <simpleError> with text:
      'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
        ▆
     1. ├─withr::with_envvar(...) at test-connect.R:58:5
     2. │ └─base::force(code)
     3. └─testthat::expect_no_condition(...) at test-connect.R:62:9
    ── Error ('test-connect.R:82:9'): yaml config parsed correctly ─────────────────
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. ├─withr::with_envvar(...) at test-connect.R:73:5
      2. │ └─base::force(code)
      3. ├─base::suppressMessages(...) at test-connect.R:82:9
      4. │ └─base::withCallingHandlers(...)
      5. ├─testthat::expect_message(...)
      6. │ └─testthat:::expect_condition_matching(...)
      7. │   └─testthat:::quasi_capture(...)
      8. │     ├─testthat (local) .capture(...)
      9. │     │ └─base::withCallingHandlers(...)
     10. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
     11. ├─connector:::parse_config(...)
     12. │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     13. └─connector:::assert_config(read_file(yaml_file_env, eval.expr = TRUE))
    ── Failure ('test-connect.R:104:3'): Using a list instead of yaml ──────────────
    Expected `connect(yaml_content_raw)` to run without any errors.
    i Actually got a <simpleError> with text:
      'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    ── Failure ('test-connect.R:110:3'): Using a json instead of yaml ──────────────
    Expected `connect(test_path("configs", "config_json.json"))` to run without any errors.
    i Actually got a <simpleError> with text:
      'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    ── Failure ('test-connect.R:115:3'): Using and update metadata ─────────────────
    Expected `connect(yaml_content_raw, metadata = list(extra_class = "test_from_metadata"))` to run without any errors.
    i Actually got a <simpleError> with text:
      'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    ── Failure ('test-connect.R:121:3'): Using and update metadata ─────────────────
    test_list$adam is not an S3 object
    ── Failure ('test-connect.R:123:3'): Using and update metadata ─────────────────
    Expected `connect(yaml_file, metadata = list(extra_class = "test_from_metadata"))` to run without any errors.
    i Actually got a <simpleError> with text:
      'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    ── Failure ('test-connect.R:129:3'): Using and update metadata ─────────────────
    test_yaml$adam is not an S3 object
    ── Error ('test-connect.R:137:3'): Add logs to connectors object ───────────────
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. └─connector::connect(yaml_file, logging = TRUE) at test-connect.R:137:3
      2.   ├─connector:::connect_from_config(...)
      3.   │ ├─rlang::set_names(...)
      4.   │ └─purrr::map(config$datasources, create_connection)
      5.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
      6.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
      7.   ├─connector:::filter_config(...)
      8.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
      9.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     10.   └─connector:::assert_config(config)
    ── Error ('test-metadata_connectors.R:53:3'): extract_metadata works with connect function ──
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. └─connector::connect(yaml_file) at test-metadata_connectors.R:53:3
      2.   ├─connector:::connect_from_config(...)
      3.   │ ├─rlang::set_names(...)
      4.   │ └─purrr::map(config$datasources, create_connection)
      5.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
      6.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
      7.   ├─connector:::filter_config(...)
      8.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
      9.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     10.   └─connector:::assert_config(config)
    ── Error ('test-metadata_connectors.R:105:5'): print metadata infos [plain] ────
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. ├─withr::with_tempdir(...) at test-metadata_connectors.R:88:3
      2. │ └─withr::with_dir(tmp, code)
      3. │   └─base::force(code)
      4. └─connector::connect(config = config) at test-metadata_connectors.R:105:5
      5.   ├─connector:::connect_from_config(...)
      6.   │ ├─rlang::set_names(...)
      7.   │ └─purrr::map(config$datasources, create_connection)
      8.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
      9.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
     10.   ├─connector:::filter_config(...)
     11.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
     12.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     13.   └─connector:::assert_config(config)
    ── Error ('test-metadata_connectors.R:105:5'): print metadata infos [ansi] ─────
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. ├─withr::with_tempdir(...) at test-metadata_connectors.R:88:3
      2. │ └─withr::with_dir(tmp, code)
      3. │   └─base::force(code)
      4. └─connector::connect(config = config) at test-metadata_connectors.R:105:5
      5.   ├─connector:::connect_from_config(...)
      6.   │ ├─rlang::set_names(...)
      7.   │ └─purrr::map(config$datasources, create_connection)
      8.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
      9.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
     10.   ├─connector:::filter_config(...)
     11.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
     12.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     13.   └─connector:::assert_config(config)
    ── Error ('test-metadata_connectors.R:105:5'): print metadata infos [unicode] ──
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. ├─withr::with_tempdir(...) at test-metadata_connectors.R:88:3
      2. │ └─withr::with_dir(tmp, code)
      3. │   └─base::force(code)
      4. └─connector::connect(config = config) at test-metadata_connectors.R:105:5
      5.   ├─connector:::connect_from_config(...)
      6.   │ ├─rlang::set_names(...)
      7.   │ └─purrr::map(config$datasources, create_connection)
      8.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
      9.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
     10.   ├─connector:::filter_config(...)
     11.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
     12.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     13.   └─connector:::assert_config(config)
    ── Error ('test-metadata_connectors.R:105:5'): print metadata infos [fancy] ────
    Error: 'report_checkmate_assertions' is not an exported object from 'namespace:zephyr'
    Backtrace:
         ▆
      1. ├─withr::with_tempdir(...) at test-metadata_connectors.R:88:3
      2. │ └─withr::with_dir(tmp, code)
      3. │   └─base::force(code)
      4. └─connector::connect(config = config) at test-metadata_connectors.R:105:5
      5.   ├─connector:::connect_from_config(...)
      6.   │ ├─rlang::set_names(...)
      7.   │ └─purrr::map(config$datasources, create_connection)
      8.   │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
      9.   │     └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
     10.   ├─connector:::filter_config(...)
     11.   ├─connector:::parse_config(assert_config(config), set_env = set_env)
     12.   │ └─connector:::parse_config_helper(config[["env"]], input = list(env = env_old))
     13.   └─connector:::assert_config(config)
    
    [ FAIL 16 | WARN 1 | SKIP 21 | PASS 140 ]
    Error: Test failures
    Execution halted