Package check result: ERROR Check: examples, Result: ERROR Running examples in ‘zenplots-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: graph_pairs > ### Title: Turn pairs or paths into a graph > ### Aliases: graph_pairs > > ### ** Examples > > ## To display the graphs constructed the packages > ## graph and Rgraphviz packages need to be loaded > library(graph) Loading required package: BiocGenerics Loading required package: generics Attaching package: ‘generics’ The following objects are masked from ‘package:base’: as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min > library(Rgraphviz) Error in library(Rgraphviz) : there is no package called ‘Rgraphviz’ Execution halted Check: re-building of vignette outputs, Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘intro.Rmd’ using rmarkdown Quitting from intro.Rmd:97-102 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'Rgraphviz' --- Backtrace: ▆ 1. └─base::library(Rgraphviz) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'intro.Rmd' failed with diagnostics: there is no package called 'Rgraphviz' --- failed re-building ‘intro.Rmd’ --- re-building ‘selected_features.Rmd’ using rmarkdown Quitting from selected_features.Rmd:225-234 [unnamed-chunk-25] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'scagnostics' --- Backtrace: ▆ 1. └─base::library(scagnostics) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'selected_features.Rmd' failed with diagnostics: there is no package called 'scagnostics' --- failed re-building ‘selected_features.Rmd’ SUMMARY: processing the following files failed: ‘intro.Rmd’ ‘selected_features.Rmd’ Error: Vignette re-building failed. Execution halted