downloading reverse dependencies ‘aIc’, ‘CoDaLoMic’, ‘countprop’, ‘metamicrobiomeR’, ‘readyomics’, ‘robCompositions’, ‘codacore’ trying URL 'file:///data/Repositories/CRAN/src/contrib/aIc_1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CoDaLoMic_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/countprop_1.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/metamicrobiomeR_1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/readyomics_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/robCompositions_2.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/codacore_0.0.4.tar.gz' installing dependencies ‘ALDEx2’, ‘ggbiplot’, ‘IHW’, ‘imputeLCMD’, ‘repmis’, ‘ropls’, ‘sparsepca’, ‘zCompositions’ also installing the dependencies ‘BiocBaseUtils’, ‘qqman’, ‘lpsymphony’, ‘MultiAssayExperiment’, ‘MultiDataSet’ begin installing package ‘BiocBaseUtils’ begin installing package ‘qqman’ begin installing package ‘lpsymphony’ begin installing package ‘zCompositions’ begin installing package ‘ggbiplot’ begin installing package ‘repmis’ begin installing package ‘imputeLCMD’ begin installing package ‘sparsepca’ * installing *source* package ‘BiocBaseUtils’ ... ** this is package ‘BiocBaseUtils’ version ‘1.12.0’ ** package ‘BiocBaseUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocBaseUtils) begin installing package ‘MultiAssayExperiment’ * installing *source* package ‘qqman’ ... ** this is package ‘qqman’ version ‘0.1.9’ ** package ‘qqman’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qqman) begin installing package ‘MultiDataSet’ * installing *source* package ‘repmis’ ... ** this is package ‘repmis’ version ‘0.5.1’ ** package ‘repmis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (repmis) * installing *source* package ‘lpsymphony’ ... ** this is package ‘lpsymphony’ version ‘1.38.0’ ** package ‘lpsymphony’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyS0UAz/R.INSTALL225413e5df73c/lpsymphony/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lp_symphony.cc -o lp_symphony.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o lpsymphony.so lp_symphony.o -lSym -lCgl -lOsiClp -lClp -lOsi -lCoinUtils -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyS0UAz/R.INSTALL225413e5df73c/lpsymphony/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lpsymphony/00new/lpsymphony/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lpsymphony) begin installing package ‘IHW’ * installing *source* package ‘ggbiplot’ ... ** this is package ‘ggbiplot’ version ‘0.6.2’ ** package ‘ggbiplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggbiplot) * installing *source* package ‘sparsepca’ ... ** this is package ‘sparsepca’ version ‘0.1.2’ ** package ‘sparsepca’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparsepca) * installing *source* package ‘imputeLCMD’ ... ** this is package ‘imputeLCMD’ version ‘2.1’ ** package ‘imputeLCMD’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (imputeLCMD) * installing *source* package ‘IHW’ ... ** this is package ‘IHW’ version ‘1.38.0’ ** package ‘IHW’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘nrow’ from package ‘base’ in package ‘IHW’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IHW) * installing *source* package ‘zCompositions’ ... ** this is package ‘zCompositions’ version ‘1.6.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zCompositions) begin installing package ‘ALDEx2’ * installing *source* package ‘MultiDataSet’ ... ** this is package ‘MultiDataSet’ version ‘1.38.0’ ** package ‘MultiDataSet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for ‘add_methy’ with signature ‘"MultiDataSet","GenomicRatioSet"’: no definition for class “GenomicRatioSet” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiDataSet) * installing *source* package ‘ALDEx2’ ... ** this is package ‘ALDEx2’ version ‘1.42.0’ ** package ‘ALDEx2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ALDEx2) * installing *source* package ‘MultiAssayExperiment’ ... ** this is package ‘MultiAssayExperiment’ version ‘1.36.1’ ** package ‘MultiAssayExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiAssayExperiment) begin installing package ‘ropls’ * installing *source* package ‘ropls’ ... ** this is package ‘ropls’ version ‘1.42.0’ ** package ‘ropls’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ropls) checking zCompositions_1.6.0.tar.gz ... checking aIc_1.0.tar.gz ... checking CoDaLoMic_0.1.1.tar.gz ... checking countprop_1.1.1.tar.gz ... checking metamicrobiomeR_1.2.tar.gz ... checking readyomics_0.2.0.tar.gz ... checking robCompositions_2.4.2.tar.gz ... checking codacore_0.0.4.tar.gz ... Depends: Package: zCompositions Depends: R (>= 2.14.0), methods, MASS, truncnorm, survival Timings: user system elapsed zCompositions 58.475 4.797 65.363 Results: Check status summary: OK Source packages 1 Reverse depends 7 Check results summary: zCompositions ... OK rdepends_aIc ... OK rdepends_codacore ... OK rdepends_CoDaLoMic ... OK rdepends_countprop ... OK rdepends_metamicrobiomeR ... OK rdepends_readyomics ... OK rdepends_robCompositions ... OK Check results changes: Package: aIc Check: CRAN incoming feasibility Old result: NOTE Package: codacore Check: CRAN incoming feasibility Old result: NOTE Package: robCompositions Check: CRAN incoming feasibility Old result: NOTE