test_that("Calculations are correct - two class", { lst <- data_altman() pathology <- lst$pathology sensitivity <- 231 / 258 specificity <- 54 / 86 expected <- sqrt((1 - sensitivity)^2 + (1 - specificity)^2) expect_equal( roc_dist_vec(truth = pathology$pathology, estimate = pathology$scan), expected ) }) test_that("Calculations are correct - three class", { multi_ex <- data_three_by_three() micro <- data_three_by_three_micro() expect_equal( roc_dist(multi_ex, estimator = "macro")[[".estimate"]], macro_metric(roc_dist_binary) ) expect_equal( roc_dist(multi_ex, estimator = "macro_weighted")[[".estimate"]], macro_weighted_metric(roc_dist_binary) ) expect_equal( roc_dist(multi_ex, estimator = "micro")[[".estimate"]], with( micro, sqrt( (1 - sum(tp) / sum(p))^2 + (1 - sum(tn) / sum(n))^2 ) ) ) }) test_that("All interfaces gives the same results", { lst <- data_altman() pathology <- lst$pathology path_tbl <- lst$path_tbl path_mat <- unclass(path_tbl) exp <- roc_dist_vec(pathology$pathology, pathology$scan) expect_identical( roc_dist(path_tbl)[[".estimate"]], exp ) expect_identical( roc_dist(path_mat)[[".estimate"]], exp ) expect_identical( roc_dist(pathology, truth = pathology, estimate = scan)[[".estimate"]], exp ) }) test_that("Calculations handles NAs", { lst <- data_altman() pathology <- lst$pathology sensitivity <- 230 / 256 specificity <- 53 / 85 expected <- sqrt((1 - sensitivity)^2 + (1 - specificity)^2) expect_equal( roc_dist_vec(truth = pathology$pathology, estimate = pathology$scan_na), expected ) }) test_that("Case weights calculations are correct", { df <- data.frame( truth = factor(c("x", "x", "y"), levels = c("x", "y")), estimate = factor(c("x", "y", "x"), levels = c("x", "y")), case_weights = c(1L, 10L, 2L) ) sensitivity <- 1 / 11 specificity <- 0 / 2 expected <- sqrt((1 - sensitivity)^2 + (1 - specificity)^2) expect_identical( roc_dist(df, truth, estimate, case_weights = case_weights)[[".estimate"]], expected ) }) test_that("work with class_pred input", { skip_if_not_installed("probably") cp_truth <- probably::as_class_pred(two_class_example$truth, which = 1) cp_estimate <- probably::as_class_pred(two_class_example$predicted, which = 2) fct_truth <- two_class_example$truth fct_truth[1] <- NA fct_estimate <- two_class_example$predicted fct_estimate[2] <- NA expect_identical( roc_dist_vec(fct_truth, cp_estimate), roc_dist_vec(fct_truth, fct_estimate) ) expect_identical( roc_dist_vec(fct_truth, cp_estimate, na_rm = FALSE), NA_real_ ) expect_snapshot( error = TRUE, roc_dist_vec(cp_truth, cp_estimate) ) }) test_that("works with hardhat case weights", { lst <- data_altman() df <- lst$pathology imp_wgt <- hardhat::importance_weights(seq_len(nrow(df))) freq_wgt <- hardhat::frequency_weights(seq_len(nrow(df))) expect_no_error( roc_dist_vec(df$pathology, df$scan, case_weights = imp_wgt) ) expect_no_error( roc_dist_vec(df$pathology, df$scan, case_weights = freq_wgt) ) }) test_that("na_rm argument check", { expect_snapshot( error = TRUE, roc_dist_vec(1, 1, na_rm = "yes") ) }) test_that("`event_level = 'second'` works", { lst <- data_altman() df <- lst$pathology df_rev <- df df_rev$pathology <- stats::relevel(df_rev$pathology, "norm") df_rev$scan <- stats::relevel(df_rev$scan, "norm") expect_equal( roc_dist_vec(df$pathology, df$scan), roc_dist_vec(df_rev$pathology, df_rev$scan, event_level = "second") ) }) test_that("Binary returns `NA` with a warning when results are undefined (#98)", { # sensitivity - (tp + fn = 0) levels <- c("a", "b") truth <- factor(c("b", "b"), levels = levels) estimate <- factor(c("a", "b"), levels = levels) expect_snapshot( out <- roc_dist_vec(truth, estimate) ) expect_identical(out, NA_real_) # specificity - (tn + fp = 0) levels <- c("a", "b") truth <- factor("a", levels = levels) estimate <- factor("b", levels = levels) expect_snapshot( out <- roc_dist_vec(truth, estimate) ) expect_identical(out, NA_real_) }) test_that("`NA` is still returned if there are some undefined values but `na_rm = FALSE`", { levels <- c("a", "b", "c") truth <- factor(c("a", "b", "b"), levels = levels) estimate <- factor(c("a", NA, "c"), levels = levels) expect_equal(roc_dist_vec(truth, estimate, na_rm = FALSE), NA_real_) expect_warning(roc_dist_vec(truth, estimate, na_rm = FALSE), NA) }) test_that("range values are correct", { direction <- metric_direction(roc_dist) range <- metric_range(roc_dist) perfect <- ifelse(direction == "minimize", range[1], range[2]) df <- tibble::tibble( truth = factor(c("A", "A", "B", "B", "B")), off = factor(c("B", "B", "A", "A", "A")) ) expect_equal( roc_dist_vec(df$truth, df$truth), perfect ) if (direction == "minimize") { expect_gt(roc_dist_vec(df$truth, df$off), perfect) } if (direction == "maximize") { expect_lt(roc_dist_vec(df$truth, df$off), perfect) } })