test_that("Calculations are correct - two class", { lst <- data_altman() pathology <- lst$pathology path_tbl <- lst$path_tbl expect_equal( bal_accuracy_vec(truth = pathology$pathology, estimate = pathology$scan), (sens_vec(truth = pathology$pathology, estimate = pathology$scan) + spec_vec(truth = pathology$pathology, estimate = pathology$scan)) / 2 ) }) test_that("Calculations are correct - three class", { multi_ex <- data_three_by_three() micro <- data_three_by_three_micro() expect_equal( bal_accuracy(multi_ex, estimator = "macro")[[".estimate"]], macro_metric(bal_accuracy_binary) ) expect_equal( bal_accuracy(multi_ex, estimator = "macro_weighted")[[".estimate"]], macro_weighted_metric(bal_accuracy_binary) ) expect_equal( bal_accuracy(multi_ex, estimator = "micro")[[".estimate"]], with(micro, (sum(tp) / sum(p) + sum(tn) / sum(n)) / 2) ) }) test_that("All interfaces gives the same results", { lst <- data_altman() pathology <- lst$pathology path_tbl <- lst$path_tbl path_mat <- unclass(path_tbl) exp <- bal_accuracy_vec(pathology$pathology, pathology$scan) expect_identical( bal_accuracy(path_tbl)[[".estimate"]], exp ) expect_identical( bal_accuracy(path_mat)[[".estimate"]], exp ) expect_identical( bal_accuracy(pathology, truth = pathology, estimate = scan)[[".estimate"]], exp ) }) test_that("Calculations handles NAs", { lst <- data_altman() pathology <- lst$pathology path_tbl <- lst$path_tbl expect_equal( bal_accuracy_vec(truth = pathology$pathology, estimate = pathology$scan_na), (sens_vec(truth = pathology$pathology, estimate = pathology$scan_na) + spec_vec(truth = pathology$pathology, estimate = pathology$scan_na)) / 2 ) }) test_that("Case weights calculations are correct", { df <- data.frame( truth = factor(c("x", "x", "y"), levels = c("x", "y")), estimate = factor(c("x", "y", "x"), levels = c("x", "y")), case_weights = c(1L, 1L, 2L) ) # 1 correct, 2 wrong. Normally 1/3 accuracy, but one of the wrong # values is weighted 2x so we get 1/4. expect_identical( bal_accuracy_vec(df$truth, df$estimate, case_weights = df$case_weights), 1 / 4 ) py_res <- read_pydata("py-bal-accuracy") r_metric <- bal_accuracy two_class_example$weights <- read_weights_two_class_example() expect_equal( r_metric(two_class_example, truth, predicted, case_weights = weights)[[ ".estimate" ]], py_res$case_weight$binary ) }) test_that("work with class_pred input", { skip_if_not_installed("probably") cp_truth <- probably::as_class_pred(two_class_example$truth, which = 1) cp_estimate <- probably::as_class_pred(two_class_example$predicted, which = 2) fct_truth <- two_class_example$truth fct_truth[1] <- NA fct_estimate <- two_class_example$predicted fct_estimate[2] <- NA expect_identical( bal_accuracy_vec(fct_truth, cp_estimate), bal_accuracy_vec(fct_truth, fct_estimate) ) expect_identical( bal_accuracy_vec(fct_truth, cp_estimate, na_rm = FALSE), NA_real_ ) expect_snapshot( error = TRUE, bal_accuracy_vec(cp_truth, cp_estimate) ) }) test_that("works with hardhat case weights", { lst <- data_altman() df <- lst$pathology imp_wgt <- hardhat::importance_weights(seq_len(nrow(df))) freq_wgt <- hardhat::frequency_weights(seq_len(nrow(df))) expect_no_error( bal_accuracy_vec(df$pathology, df$scan, case_weights = imp_wgt) ) expect_no_error( bal_accuracy_vec(df$pathology, df$scan, case_weights = freq_wgt) ) }) test_that("na_rm argument check", { expect_snapshot( error = TRUE, bal_accuracy_vec(1, 1, na_rm = "yes") ) }) test_that("`event_level = 'second'` should be identical to 'first'", { lst <- data_altman() pathology <- lst$pathology path_tbl <- lst$path_tbl expect_identical( bal_accuracy_vec( pathology$pathology, pathology$scan, event_level = "first" ), bal_accuracy_vec( pathology$pathology, pathology$scan, event_level = "second" ) ) }) test_that("range values are correct", { direction <- metric_direction(bal_accuracy) range <- metric_range(bal_accuracy) perfect <- ifelse(direction == "minimize", range[1], range[2]) worst <- ifelse(direction == "minimize", range[2], range[1]) df <- tibble::tibble( truth = factor(c("A", "A", "B", "B", "B")), off = factor(c("B", "B", "A", "A", "A")) ) expect_equal( bal_accuracy_vec(df$truth, df$truth), perfect ) if (direction == "minimize") { expect_gt(bal_accuracy_vec(df$truth, df$off), perfect) expect_lte(bal_accuracy_vec(df$truth, df$off), worst) } if (direction == "maximize") { expect_lt(bal_accuracy_vec(df$truth, df$off), perfect) expect_gte(bal_accuracy_vec(df$truth, df$off), worst) } })