downloading reverse dependencies ‘climetrics’, ‘intrinsicDimension’, ‘NCSampling’, ‘neuroim’, ‘stlplus’, ‘ale’, ‘iml’, ‘spatialEco’ trying URL 'file:///data/Repositories/CRAN/src/contrib/climetrics_1.0-15.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/intrinsicDimension_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/NCSampling_1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/neuroim_0.0.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/stlplus_0.5.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ale_0.5.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/iml_0.11.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/spatialEco_2.0-4.tar.gz' installing dependencies ‘ALEPlot’, ‘ccaPP’, ‘rts’, ‘SpatialPack’, ‘staccuracy’, ‘univariateML’, ‘yaImpute’, ‘zyp’ Warning: package ‘ALEPlot’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependency ‘nakagami’ begin installing package ‘nakagami’ begin installing package ‘ccaPP’ begin installing package ‘staccuracy’ begin installing package ‘rts’ begin installing package ‘zyp’ begin installing package ‘SpatialPack’ begin installing package ‘yaImpute’ * installing *source* package ‘nakagami’ ... ** this is package ‘nakagami’ version ‘1.1.0’ ** package ‘nakagami’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nakagami) begin installing package ‘univariateML’ * installing *source* package ‘zyp’ ... ** this is package ‘zyp’ version ‘0.11-1’ ** package ‘zyp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zyp) * installing *source* package ‘staccuracy’ ... ** this is package ‘staccuracy’ version ‘0.2.2’ ** package ‘staccuracy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (staccuracy) * installing *source* package ‘SpatialPack’ ... ** this is package ‘SpatialPack’ version ‘0.4-1’ ** package ‘SpatialPack’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJu5z6R/R.INSTALL2982d66692a266/SpatialPack/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init_SpatialPack.c -o R_init_SpatialPack.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base.c -o base.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c brent.c -o brent.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c codisp.c -o codisp.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c codisp_direction.f -o codisp_direction.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cor_spatial.c -o cor_spatial.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c denoise.f -o denoise.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c image.c -o image.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c interface.c -o interface.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mod_ttest.c -o mod_ttest.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c similarity.c -o similarity.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/fastmatrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weights.c -o weights.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o SpatialPack.so R_init_SpatialPack.o base.o brent.o codisp.o codisp_direction.o cor_spatial.o denoise.o image.o interface.o mod_ttest.o similarity.o weights.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lm -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJu5z6R/R.INSTALL2982d66692a266/SpatialPack/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SpatialPack/00new/SpatialPack/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpatialPack) * installing *source* package ‘univariateML’ ... ** this is package ‘univariateML’ version ‘1.5.0’ ** package ‘univariateML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (univariateML) * installing *source* package ‘yaImpute’ ... ** this is package ‘yaImpute’ version ‘1.0-36’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeQ0p9Z/R.INSTALL2982d147cf4956/yaImpute/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ANN.cpp -o ANN.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c annImpute.cpp -o annImpute.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bd_pr_search.cpp -o bd_pr_search.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bd_search.cpp -o bd_search.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bd_tree.cpp -o bd_tree.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c brute.cpp -o brute.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_dump.cpp -o kd_dump.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_pr_search.cpp -o kd_pr_search.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_search.cpp -o kd_search.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_split.cpp -o kd_split.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_tree.cpp -o kd_tree.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_util.cpp -o kd_util.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c perf.cpp -o perf.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rfoneprox.cpp -o rfoneprox.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yaImpute_init.c -o yaImpute_init.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o yaImpute.so ANN.o annImpute.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o perf.o rfoneprox.o util.o yaImpute_init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeQ0p9Z/R.INSTALL2982d147cf4956/yaImpute/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-yaImpute/00new/yaImpute/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yaImpute) * installing *source* package ‘rts’ ... ** this is package ‘rts’ version ‘1.1-14’ ** package ‘rts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rts) * installing *source* package ‘ccaPP’ ... ** this is package ‘ccaPP’ version ‘0.3.5’ ** package ‘ccaPP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF9mobx/R.INSTALL2982cb1eff2274/ccaPP/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cca.cpp -o cca.o In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:32, from cca.h:11, from cca.cpp:7: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/tmp/R-d-gcc-15/include/R.h:73, from cca.cpp:6: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’: /home/hornik/tmp/R-d-gcc-15/include/R_ext/Error.h:89:17: warning: infinite recursion detected [-Winfinite-recursion] 89 | #define warning Rf_warning | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:188:17: note: in expansion of macro ‘warning’ 188 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:131: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:189:19: note: recursive call 189 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ccaPP_init.c -o ccaPP_init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cor.cpp -o cor.o In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:32, from cor.h:11, from cor.cpp:7: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastCorKendall.cpp -o fastCorKendall.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:32, from utils.h:11, from utils.cpp:7: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/tmp/R-d-gcc-15/include/R.h:73, from utils.cpp:6: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’: /home/hornik/tmp/R-d-gcc-15/include/R_ext/Error.h:89:17: warning: infinite recursion detected [-Winfinite-recursion] 89 | #define warning Rf_warning | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:188:17: note: in expansion of macro ‘warning’ 188 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:131: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:189:19: note: recursive call 189 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ccaPP.so cca.o ccaPP_init.o cor.o fastCorKendall.o utils.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF9mobx/R.INSTALL2982cb1eff2274/ccaPP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ccaPP/00new/ccaPP/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ccaPP) checking yaImpute_1.0-36.tar.gz ... checking climetrics_1.0-15.tar.gz ... checking intrinsicDimension_1.2.0.tar.gz ... checking NCSampling_1.0.tar.gz ... checking neuroim_0.0.6.tar.gz ... checking stlplus_0.5.2.tar.gz ... checking ale_0.5.3.tar.gz ... checking iml_0.11.4.tar.gz ... checking spatialEco_2.0-4.tar.gz ... Depends: Package: yaImpute Depends: R (>= 4.0.0) Imports: grDevices, graphics, stats, utils Timings: user system elapsed yaImpute 48.808 4.854 54.537 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 8 Check results summary: yaImpute ... NOTE * checking CRAN incoming feasibility ... [5s/6s] NOTE rdepends_ale ... OK rdepends_climetrics ... OK rdepends_iml ... OK rdepends_intrinsicDimension ... OK rdepends_NCSampling ... OK rdepends_neuroim ... OK rdepends_spatialEco ... OK rdepends_stlplus ... OK Check results changes: Package: intrinsicDimension Check: CRAN incoming feasibility Old result: NOTE Package: NCSampling Check: CRAN incoming feasibility Old result: NOTE Package: neuroim Check: CRAN incoming feasibility Old result: NOTE