downloading reverse dependencies ‘Certara.DarwinReporter’, ‘Certara.ModelResults’, ‘Certara.Xpose.NLME’, ‘nlmixr2rpt’, ‘xpose.nlmixr2’, ‘xpose.xtras’, ‘Certara.VPCResults’, ‘shinyMixR’ trying URL 'file:///data/Repositories/CRAN/src/contrib/Certara.DarwinReporter_2.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Certara.ModelResults_3.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Certara.Xpose.NLME_2.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/nlmixr2rpt_0.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/xpose.nlmixr2_0.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/xpose.xtras_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Certara.VPCResults_3.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shinyMixR_0.5.3.tar.gz' installing dependencies ‘Certara.RsNLME’, ‘Certara.Xpose.NLME’, ‘collapsibleTree’, ‘ggPMX’, ‘nlmixr2’, ‘nlmixr2extra’, ‘nlmixr2plot’, ‘onbrand’, ‘pmxcv’, ‘R3port’, ‘shinymeta’, ‘shinyTree’, ‘tidyvpc’, ‘xpose’, ‘xpose.nlmixr2’ also installing the dependency ‘Certara.NLME8’ begin installing package ‘Certara.NLME8’ begin installing package ‘shinymeta’ begin installing package ‘xpose’ begin installing package ‘shinyTree’ begin installing package ‘nlmixr2extra’ begin installing package ‘onbrand’ begin installing package ‘ggPMX’ begin installing package ‘pmxcv’ begin installing package ‘tidyvpc’ begin installing package ‘collapsibleTree’ begin installing package ‘R3port’ * installing *source* package ‘pmxcv’ ... ** this is package ‘pmxcv’ version ‘0.0.2’ ** package ‘pmxcv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pmxcv) * installing *source* package ‘collapsibleTree’ ... ** this is package ‘collapsibleTree’ version ‘0.1.8’ ** package ‘collapsibleTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (collapsibleTree) * installing *source* package ‘shinymeta’ ... ** this is package ‘shinymeta’ version ‘0.2.1’ ** package ‘shinymeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinymeta) * installing *source* package ‘R3port’ ... ** this is package ‘R3port’ version ‘0.3.1’ ** package ‘R3port’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R3port) * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) * installing *source* package ‘Certara.NLME8’ ... ** this is package ‘Certara.NLME8’ version ‘3.0.2’ ** package ‘Certara.NLME8’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Certara.NLME8) begin installing package ‘Certara.RsNLME’ * installing *source* package ‘onbrand’ ... ** this is package ‘onbrand’ version ‘1.0.8’ ** package ‘onbrand’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (onbrand) * installing *source* package ‘xpose’ ... ** this is package ‘xpose’ version ‘0.4.23’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xpose) begin installing package ‘Certara.Xpose.NLME’ begin installing package ‘xpose.nlmixr2’ * installing *source* package ‘tidyvpc’ ... ** this is package ‘tidyvpc’ version ‘1.5.2’ ** package ‘tidyvpc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyvpc) * installing *source* package ‘ggPMX’ ... ** this is package ‘ggPMX’ version ‘1.3.2’ ** package ‘ggPMX’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggPMX) * installing *source* package ‘Certara.Xpose.NLME’ ... ** this is package ‘Certara.Xpose.NLME’ version ‘2.0.2’ ** package ‘Certara.Xpose.NLME’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Certara.Xpose.NLME) * installing *source* package ‘xpose.nlmixr2’ ... ** this is package ‘xpose.nlmixr2’ version ‘0.4.1’ ** package ‘xpose.nlmixr2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning in vpc::new_vpc_theme(list(obs_color = "#1F4E79", obs_size = 1, : obs_median_size is deprecated, please use obs_median_linewidth Warning in vpc::new_vpc_theme(list(obs_color = "#1F4E79", obs_size = 1, : obs_ci_size is deprecated, please use obs_ci_linewidth Warning in vpc::new_vpc_theme(list(obs_color = "#1F4E79", obs_size = 1, : sim_pi_size is deprecated, please use sim_pi_linewidth Warning in vpc::new_vpc_theme(list(obs_color = "#1F4E79", obs_size = 1, : sim_median_size is deprecated, please use sim_median_linewidth ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xpose.nlmixr2) * installing *source* package ‘Certara.RsNLME’ ... ** this is package ‘Certara.RsNLME’ version ‘3.1.0.1’ ** package ‘Certara.RsNLME’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Certara.RsNLME) * installing *source* package ‘nlmixr2extra’ ... ** this is package ‘nlmixr2extra’ version ‘5.0.0’ ** package ‘nlmixr2extra’ successfully unpacked and MD5 sums checked ** using staged installation R Under development (unstable) (2026-02-28 r89504) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. R> if (!dir.exists("data")) { + dir.create("data") + } R> R> .in <- suppressWarnings(readLines("src/Makevars.in")) R> if (.Platform$OS.type == "windows") { + .makevars <- file("src/Makevars.win", "wb") + .i <- "I" + } else { + .makevars <- file("src/Makevars", "wb") + if (any(grepl("Pop!_OS", utils::osVersion, fixed=TRUE))) { + .i <- "isystem" + } else { + .i <- "I" + } + } R> R> writeLines(gsub("@ISYSTEM@", .i, .in), + .makevars) R> close(.makevars) R> > proc.time() user system elapsed 0.112 0.040 0.144 --------[begin src/Makevars]-------- ## -*- mode: makefile; -*- PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -DARMA_USE_CXX11 PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) --------[end src/Makevars]-------- ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6cn7oP/R.INSTALL31810a58d71627/nlmixr2extra/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_USE_CXX11 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_USE_CXX11 -fpic -g -O2 -Wall -pedantic -mtune=native -c preCondInv.cpp -o preCondInv.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o nlmixr2extra.so RcppExports.o init.o preCondInv.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6cn7oP/R.INSTALL31810a58d71627/nlmixr2extra/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-nlmixr2extra/00new/nlmixr2extra/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlmixr2extra) begin installing package ‘nlmixr2plot’ * installing *source* package ‘nlmixr2plot’ ... ** this is package ‘nlmixr2plot’ version ‘5.0.1’ ** package ‘nlmixr2plot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlmixr2plot) begin installing package ‘nlmixr2’ * installing *source* package ‘nlmixr2’ ... ** this is package ‘nlmixr2’ version ‘5.0.0’ ** package ‘nlmixr2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlmixr2) checking xpose_0.4.23.tar.gz ... checking Certara.ModelResults_3.0.1.tar.gz ... checking Certara.DarwinReporter_2.0.1.tar.gz ... checking Certara.Xpose.NLME_2.0.2.tar.gz ... checking nlmixr2rpt_0.2.2.tar.gz ... checking xpose.nlmixr2_0.4.1.tar.gz ... checking xpose.xtras_0.1.2.tar.gz ... checking Certara.VPCResults_3.0.2.tar.gz ... checking shinyMixR_0.5.3.tar.gz ... Depends: Package: xpose Depends: R (>= 4.2.0), ggplot2 (>= 3.5.2) Imports: dplyr (>= 1.1.4), ggforce (>= 0.5.0), purrr (>= 1.0.4), readr (>= 2.1.5), rlang (>= 1.1.6), stringr (>= 1.5.1), tibble (>= 3.3.0), tidyr (>= 1.3.1), utils, stats, vpc (>= 1.2.2) Timings: user system elapsed xpose 185.037 8.814 195.092 Results: Check status summary: OK Source packages 1 Reverse depends 8 Check results summary: xpose ... OK rdepends_Certara.DarwinReporter ... OK rdepends_Certara.ModelResults ... OK rdepends_Certara.VPCResults ... OK rdepends_Certara.Xpose.NLME ... OK rdepends_nlmixr2rpt ... OK rdepends_shinyMixR ... OK rdepends_xpose.nlmixr2 ... OK rdepends_xpose.xtras ... OK