prediction_plot_functions <- c('dv_vs_pred', 'dv_vs_ipred', 'dv_vs_idv', 'ipred_vs_idv', 'pred_vs_idv', 'dv_preds_vs_idv') residual_plot_functions <- c('res_vs_idv', 'res_vs_pred', 'absval_res_vs_idv', 'absval_res_vs_pred', 'res_distrib', 'res_qq') iteration_plot_functions <- c('prm_vs_iteration', 'grd_vs_iteration') parameter_plot_functions <- c('prm_distrib', 'prm_qq') eta_plot_functions <- c('eta_distrib', 'eta_qq') cov_plot_functions <- c('cov_distrib', 'cov_qq') kinetic_plot_functions <- c('amt_vs_idv') individual_plot_functions <- c('ind_plots') plot_functions <- c(prediction_plot_functions, residual_plot_functions, iteration_plot_functions, parameter_plot_functions, eta_plot_functions, cov_plot_functions, individual_plot_functions, kinetic_plot_functions) not_sim_functions <- plot_functions[!grepl('iteration|prm_|eta_|cov_|res_qq|res_distrib|amt_|pred|ind_plots', plot_functions)] distribution_functions <- plot_functions[grepl('(prm|eta|cov|res)_(distrib|qq)', plot_functions)] # Simulation only xpdb xpdb_sim_only <- xpose_data(file = 'sim.lst', dir = 'data', quiet = TRUE) # Missing all output files except grd xpdb_mis_file <- xpose_data(file = 'sim.lst', dir = 'data', ignore = c('data', 'summary'), quiet = TRUE, extra_files = '.phi') # No output files at all xpdb_no_file <- xpose_data(file = 'sim.lst', dir = 'data', quiet = TRUE, ignore = c('data', 'files', 'summary')) # Tests start here -------------------------------------------------------- test_that_for_all(plot_functions, 'errors are returned when xpdb_ex_pk is missing', { expect_error(.plot_function()) }) test_that_for_all(plot_functions, 'errors are returned when length .problem is > 1', { expect_error(.plot_function(xpdb_ex_pk, .problem = 1:2), regexp = 'must be of length 1') }) test_that_for_all(plot_functions, 'errors are returned a .problem not in the data', { expect_error(.plot_function(xpdb_ex_pk, .problem = 99), regexp = '99 not found in') }) test_that_for_all(plot_functions, 'xpose plot objects are returned with appropriate xpdb_ex_pk', { expect_true(is.xpose.plot(.plot_function(xpdb_ex_pk))) }) test_that_for_all(residual_plot_functions, 'xpose plot objects are returned with appropriate xpdb_ex_pk and muliple residuals', { expect_true(is.xpose.plot(.residual_plot_function(xpdb_ex_pk, res = c('CWRES', 'IWRES')))) }) test_that_for_all(not_sim_functions, 'no error occurs when xpdb is from a simulation only', { expect_error(.not_sim_function(xpdb_sim_only), NA) }) test_that_for_all(iteration_plot_functions, 'have proper error check', { expect_error(.iteration_plot_function(xpdb_no_file), regexp = 'No `files` slot could be found in this xpdb') expect_error(.iteration_plot_function(xpdb_mis_file), regexp = 'File extension.+not found in model output files') }) test_that_for_all(distribution_functions, 'have proper error check', { expect_error(.distribution_function(xpdb_sim_only), regexp = 'Column.+ not available') expect_error(.distribution_function(xpdb_no_file), regexp = 'No `data` slot could be found in this xpdb') expect_error(xpdb_ex_pk %>% filter(ITERATION == 0, .source = 'ext') %>% prm_vs_iteration(), regexp = 'No parameters varying across ITERATION were found') expect_error(xpdb_ex_pk %>% mutate(ETA1 = 0, ETA2 = 0, ETA3 = 0) %>% eta_qq(drop_fixed = TRUE), regexp = 'No non-fixed variables available for plotting') expect_true(is.xpose.plot(xpdb_ex_pk %>% mutate(ETA1 = 0, ETA2 = 0, ETA3 = 0) %>% eta_qq(drop_fixed = FALSE))) })