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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(xpose.xtras) ℹ xpose is not currently attached. Attaching package: 'xpose.xtras' The following object is masked from 'package:stats': filter > > test_check("xpose.xtras") i parameter labels from comments are typically ignored in non-interactive mode i Need to run with the source intact to parse comments > loading into symengine environment... > pruning branches (`if`/`else`) of full model... v done > calculate jacobian [====|====|====|====|====|====|====|====|====|====] 0:00:00 > calculate sensitivities [====|====|====|====|====|====|====|====|====|====] 0:00:00 > calculate d(f)/d(eta) [====|====|====|====|====|====|====|====|====|====] 0:00:00 > calculate d(R^2)/d(eta) [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in inner model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in inner model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 [====|====|====|====|====|====|====|====|====|====] 0:00:00 [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in EBE model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in EBE model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > compiling inner model... v done > finding duplicate expressions in FD model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in FD model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > compiling EBE model... v done > compiling events FD model... v done rxode2 5.0.2 using 2 threads (see ?getRxThreads) no cache: create with `rxCreateCache()` calculating covariance matrix [====|====|====|====|====|====|====|====|====|====] 0:00:00 done > Calculating residuals/tables v done i parameter labels from comments are typically ignored in non-interactive mode i Need to run with the source intact to parse comments > loading into symengine environment... > pruning branches (`if`/`else`) of full model... v done > calculate jacobian > calculate d(f)/d(eta) [====|====|====|====|====|====|====|====|====|====] 0:00:00 > calculate d(R^2)/d(eta) [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in inner model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in inner model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 [====|====|====|====|====|====|====|====|====|====] 0:00:00 [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in EBE model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in EBE model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > compiling inner model... v done > finding duplicate expressions in FD model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > compiling EBE model... v done > compiling events FD model... v done calculating covariance matrix [====|====|====|====|====|====|====|====|====|====] 0:00:00 done > Calculating residuals/tables v done i parameter labels from comments are typically ignored in non-interactive mode i Need to run with the source intact to parse comments > loading into symengine environment... > pruning branches (`if`/`else`) of saem model... v done > finding duplicate expressions in saem model... [====|====|====|====|====|====|====|====|====|==== v done i calculate uninformed etas i done Calculating covariance matrix [====|====|====|====|====|====|====|====|====|====] 0:00:00 > loading into symengine environment... > pruning branches (`if`/`else`) of saem model... v done > finding duplicate expressions in saem predOnly model 0... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in saem predOnly model 1... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in saem predOnly model 2... [====|====|====|====|====|====|====|====|====|====] 0:00:00 v done > Calculating residuals/tables v done > Calculating residuals/tables v done i parameter labels from comments are typically ignored in non-interactive mode i Need to run with the source intact to parse comments > loading into symengine environment... > pruning branches (`if`/`else`) of full model... v done > calculate jacobian [====|====|====|====|====|====|====|====|====|====] 0:00:00 > calculate sensitivities [====|====|====|====|====|====|====|====|====|====] 0:00:00 > calculate d(f)/d(eta) [====|====|====|====|====|====|====|====|====|====] 0:00:00 > calculate d(R^2)/d(eta) [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in inner model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in inner model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 [====|====|====|====|====|====|====|====|====|====] 0:00:00 [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in EBE model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in EBE model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > compiling inner model... v done > finding duplicate expressions in FD model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in FD model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > compiling EBE model... v done > compiling events FD model... v done calculating covariance matrix [====|====|====|====|====|====|====|====|====|====] 0:03:02 done > Calculating residuals/tables v done [ FAIL 0 | WARN 1 | SKIP 10 | PASS 848 ] ══ Skipped tests (10) ══════════════════════════════════════════════════════════ • On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3', 'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3' • requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in% getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3', 'test-diag_constants.R:129:3' • {qs} is not installed (1): 'test-nlmixr2.R:327:3' [ FAIL 0 | WARN 1 | SKIP 10 | PASS 848 ] > > proc.time() user system elapsed 675.53 2.37 694.68