R Under development (unstable) (2025-11-26 r89066 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(xpose.xtras) ℹ xpose is not currently attached. Attaching package: 'xpose.xtras' The following object is masked from 'package:stats': filter > > test_check("xpose.xtras") Saving _problems/test-nlmixr2-11.R Saving _problems/test-nlmixr2-14.R Saving _problems/test-nlmixr2-18.R [ FAIL 3 | WARN 2 | SKIP 9 | PASS 799 ] ══ Skipped tests (9) ═══════════════════════════════════════════════════════════ • On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3', 'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3' • requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in% getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3', 'test-diag_constants.R:129:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-nlmixr2.R:9:3'): nlmixr2 is compatible ─────────────────────── Expected `nlmixr2_as_xtra(fit_example)` not to throw any errors. Actually got a with message: No `nlmixr2` fit object found. Caused by error: ! qs-legacy format detected, use qs::qread ── Failure ('test-nlmixr2.R:12:3'): nlmixr2 is compatible ────────────────────── Expected `nlmixr2_as_xtra(fit_example, .skip_assoc = TRUE)` not to throw any errors. Actually got a with message: No `nlmixr2` fit object found. Caused by error: ! qs-legacy format detected, use qs::qread ── Error ('test-nlmixr2.R:15:3'): nlmixr2 is compatible ──────────────────────── Error in `backfill_nlmixr2_props(.)`: No `nlmixr2` fit object found. Caused by error: ! qs-legacy format detected, use qs::qread Backtrace: ▆ 1. ├─testthat::expect_failure(...) at test-nlmixr2.R:15:3 2. │ └─testthat:::capture_success_failure(expr) 3. │ └─base::withCallingHandlers(...) 4. ├─testthat::expect_identical(...) 5. │ └─testthat::quasi_label(enquo(object), label) 6. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 7. ├─xpose.xtras::nlmixr2_as_xtra(fit_example) 8. │ ├─... %>% backfill_nlmixr2_props() 9. │ └─xpose.nlmixr2::xpose_data_nlmixr2(obj = obj, ...) 10. │ ├─obj$dataMergeInner 11. │ └─nlmixr2est:::`$.nlmixr2FitData`(obj, "dataMergeInner") 12. │ ├─nlmixr2est::nmObjGetData(.lst) 13. │ └─nlmixr2est:::nmObjGetData.dataMergeInner(.lst) 14. │ └─nlmixr2est:::.dataMergeStub(.obj, preferFit = FALSE) 15. │ ├─obj$origData 16. │ └─nlmixr2est:::`$.nlmixr2FitData`(obj, "origData") 17. │ └─nlmixr2est:::`$.nlmixr2FitCore`(.env, arg, exact) 18. │ ├─nlmixr2est::nmObjGet(.lst) 19. │ └─nlmixr2est:::nmObjGet.default(.lst) 20. │ └─qs2::qs_deserialize(.ret) 21. ├─xpose.xtras::backfill_nlmixr2_props(.) 22. │ └─xpose.xtras:::assert_nlmixr2fit(xpdb) 23. │ ├─xpose.xtras:::xpa(...) 24. │ │ ├─rlang::try_fetch(...) 25. │ │ │ ├─base::tryCatch(...) 26. │ │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 27. │ │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 28. │ │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 29. │ │ │ └─base::withCallingHandlers(...) 30. │ │ └─rlang::exec(...) 31. │ └─xpose.xtras::test_nlmixr2_has_fit(xpdb) 32. │ └─xpose::check_xpdb(xpdb) 33. │ └─xpose::is.xpdb(xpdb) 34. ├─xpose.xtras:::mutate_files(...) 35. │ └─xpose::check_xpdb(xpdb) 36. │ └─xpose::is.xpdb(xpdb) 37. ├─xpose.xtras::set_prop(., file = mod_name) 38. │ └─xpose::get_summary(xpdb) 39. │ └─xpose::check_xpdb(xpdb, check = "summary") 40. │ └─xpose::is.xpdb(xpdb) 41. ├─xpose.xtras::as_xp_xtras(.) 42. │ └─xpose.xtras::as_xpdb_x(x) 43. │ └─base::structure(x, class = c("xp_xtras", "uneval")) 44. ├─xpose.xtras::attach_nlmixr2(., obj) 45. │ └─xpose::check_xpdb(xpdb) 46. │ └─xpose::is.xpdb(xpdb) 47. ├─base::stop(`<>`) 48. └─rlang (local) ``(`<>`) 49. └─handlers[[1L]](cnd) 50. └─rlang::abort(...) [ FAIL 3 | WARN 2 | SKIP 9 | PASS 799 ] Error: ! Test failures. Execution halted