* using log directory 'd:/RCompile/CRANincoming/R-devel/xpose.xtras.Rcheck'
* using R Under development (unstable) (2025-11-26 r89066 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'xpose.xtras/DESCRIPTION' ... OK
* this is package 'xpose.xtras' version '0.1.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'xpose.xtras' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'xpose.xtras-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: backfill_nlmixr2_props
> ### Title: Populate some properties from nlmixr2 fit
> ### Aliases: backfill_nlmixr2_props
> 
> ### ** Examples
> 
> 
> xpdb_nlmixr2 %>%
+   set_prop(condn = "not implemented") %>%
+   get_prop("condn")
[1] "not implemented"
> 
> xpdb_nlmixr2 %>%
+   set_prop(condn = "not implemented") %>%
+   backfill_nlmixr2_props() %>%
+   get_prop("condn")
Error: package "qs" needed for this function to work
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [152s] ERROR
  Running 'spelling.R'
  Running 'testthat.R' [152s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(xpose.xtras)
  ℹ xpose is not currently attached.
  
  Attaching package: 'xpose.xtras'
  
  The following object is masked from 'package:stats':
  
      filter
  
  > 
  > test_check("xpose.xtras")
  Saving _problems/test-nlmixr2-11.R
  Saving _problems/test-nlmixr2-14.R
  Saving _problems/test-nlmixr2-18.R
  [ FAIL 3 | WARN 2 | SKIP 9 | PASS 799 ]
  
  ══ Skipped tests (9) ═══════════════════════════════════════════════════════════
  • On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3',
    'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3',
    'test-xset_features.R:170:3', 'test-xset_features.R:170:3',
    'test-xset_features.R:170:3'
  • requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in%
    getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3',
    'test-diag_constants.R:129:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-nlmixr2.R:9:3'): nlmixr2 is compatible ───────────────────────
  Expected `nlmixr2_as_xtra(fit_example)` not to throw any errors.
  Actually got a <rlang_error> with message:
    No `nlmixr2` fit object found.
    Caused by error:
    ! qs-legacy format detected, use qs::qread
  ── Failure ('test-nlmixr2.R:12:3'): nlmixr2 is compatible ──────────────────────
  Expected `nlmixr2_as_xtra(fit_example, .skip_assoc = TRUE)` not to throw any errors.
  Actually got a <rlang_error> with message:
    No `nlmixr2` fit object found.
    Caused by error:
    ! qs-legacy format detected, use qs::qread
  ── Error ('test-nlmixr2.R:15:3'): nlmixr2 is compatible ────────────────────────
  Error in `backfill_nlmixr2_props(.)`: No `nlmixr2` fit object found.
  Caused by error:
  ! qs-legacy format detected, use qs::qread
  Backtrace:
       ▆
    1. ├─testthat::expect_failure(...) at test-nlmixr2.R:15:3
    2. │ └─testthat:::capture_success_failure(expr)
    3. │   └─base::withCallingHandlers(...)
    4. ├─testthat::expect_identical(...)
    5. │ └─testthat::quasi_label(enquo(object), label)
    6. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    7. ├─xpose.xtras::nlmixr2_as_xtra(fit_example)
    8. │ ├─... %>% backfill_nlmixr2_props()
    9. │ └─xpose.nlmixr2::xpose_data_nlmixr2(obj = obj, ...)
   10. │   ├─obj$dataMergeInner
   11. │   └─nlmixr2est:::`$.nlmixr2FitData`(obj, "dataMergeInner")
   12. │     ├─nlmixr2est::nmObjGetData(.lst)
   13. │     └─nlmixr2est:::nmObjGetData.dataMergeInner(.lst)
   14. │       └─nlmixr2est:::.dataMergeStub(.obj, preferFit = FALSE)
   15. │         ├─obj$origData
   16. │         └─nlmixr2est:::`$.nlmixr2FitData`(obj, "origData")
   17. │           └─nlmixr2est:::`$.nlmixr2FitCore`(.env, arg, exact)
   18. │             ├─nlmixr2est::nmObjGet(.lst)
   19. │             └─nlmixr2est:::nmObjGet.default(.lst)
   20. │               └─qs2::qs_deserialize(.ret)
   21. ├─xpose.xtras::backfill_nlmixr2_props(.)
   22. │ └─xpose.xtras:::assert_nlmixr2fit(xpdb)
   23. │   ├─xpose.xtras:::xpa(...)
   24. │   │ ├─rlang::try_fetch(...)
   25. │   │ │ ├─base::tryCatch(...)
   26. │   │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   27. │   │ │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   28. │   │ │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   29. │   │ │ └─base::withCallingHandlers(...)
   30. │   │ └─rlang::exec(...)
   31. │   └─xpose.xtras::test_nlmixr2_has_fit(xpdb)
   32. │     └─xpose::check_xpdb(xpdb)
   33. │       └─xpose::is.xpdb(xpdb)
   34. ├─xpose.xtras:::mutate_files(...)
   35. │ └─xpose::check_xpdb(xpdb)
   36. │   └─xpose::is.xpdb(xpdb)
   37. ├─xpose.xtras::set_prop(., file = mod_name)
   38. │ └─xpose::get_summary(xpdb)
   39. │   └─xpose::check_xpdb(xpdb, check = "summary")
   40. │     └─xpose::is.xpdb(xpdb)
   41. ├─xpose.xtras::as_xp_xtras(.)
   42. │ └─xpose.xtras::as_xpdb_x(x)
   43. │   └─base::structure(x, class = c("xp_xtras", "uneval"))
   44. ├─xpose.xtras::attach_nlmixr2(., obj)
   45. │ └─xpose::check_xpdb(xpdb)
   46. │   └─xpose::is.xpdb(xpdb)
   47. ├─base::stop(`<<navlbl>>`)
   48. └─rlang (local) `<fn>`(`<<navlbl>>`)
   49.   └─handlers[[1L]](cnd)
   50.     └─rlang::abort(...)
  
  [ FAIL 3 | WARN 2 | SKIP 9 | PASS 799 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [47s] OK
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... [20s] OK
* DONE
Status: 2 ERRORs