downloading reverse dependencies ... downloading annotator_0.0.3.1.tar.gz ... ok downloading blogdown_1.19.tar.gz ... ok downloading bookdown_0.38.tar.gz ... ok downloading clinDataReview_1.5.0.tar.gz ... ok downloading daiquiri_1.1.1.tar.gz ... ok downloading databraryr_0.6.2.tar.gz ... ok downloading distill_1.6.tar.gz ... ok downloading emayili_0.7.18.tar.gz ... ok downloading fabR_2.0.1.tar.gz ... ok downloading ftExtra_0.6.2.tar.gz ... ok downloading gitignore_0.1.6.tar.gz ... ok downloading highr_0.10.tar.gz ... ok downloading juicedown_0.1.1.tar.gz ... ok downloading knitr_1.45.tar.gz ... ok downloading knitrdata_0.6.1.tar.gz ... ok downloading leaflet_2.2.1.tar.gz ... ok downloading link2GI_0.5-3.tar.gz ... ok downloading markdown_1.12.tar.gz ... ok downloading MDMAPR_0.2.3.tar.gz ... ok downloading minidown_0.4.0.tar.gz ... ok downloading NMsim_0.1.0.tar.gz ... ok downloading pagedown_0.20.tar.gz ... ok downloading personalr_1.0.3.tar.gz ... ok downloading pmxcode_0.1.2.tar.gz ... ok downloading qwraps2_0.6.0.tar.gz ... ok downloading rcompendium_1.3.tar.gz ... ok downloading Rd2roxygen_1.15.tar.gz ... ok downloading rebib_0.3.2.tar.gz ... ok downloading rjtools_1.0.12.tar.gz ... ok downloading rmarkdown_2.26.tar.gz ... ok downloading rtemps_0.8.0.tar.gz ... ok downloading rticles_0.26.tar.gz ... ok downloading SASmarkdown_0.8.2.tar.gz ... ok downloading scientific_2024.1.tar.gz ... ok downloading sendigR_1.0.0.tar.gz ... ok downloading servr_0.30.tar.gz ... ok downloading Statamarkdown_0.9.2.tar.gz ... ok downloading texor_1.3.0.tar.gz ... ok downloading tinytex_0.50.tar.gz ... ok downloading tufte_0.13.tar.gz ... ok downloading vitae_0.5.4.tar.gz ... ok downloading voiceR_0.1.0.tar.gz ... ok downloading worcs_0.1.14.tar.gz ... ok downloading xaringan_0.30.tar.gz ... ok downloading campsismod_1.1.1.tar.gz ... ok downloading curephEM_0.3.0.tar.gz ... ok downloading ddtlcm_0.1.1.tar.gz ... ok downloading FGLMtrunc_0.1.0.tar.gz ... ok downloading glmnet_4.1-8.tar.gz ... ok downloading hdcate_0.1.0.tar.gz ... ok downloading islasso_1.5.2.tar.gz ... ok downloading mfp2_1.0.0.tar.gz ... ok downloading mimsy_0.6.4.tar.gz ... ok downloading multiview_0.8.tar.gz ... ok downloading pathwayTMB_0.1.3.tar.gz ... ok downloading plasso_0.1.2.tar.gz ... ok downloading polished_0.8.1.tar.gz ... ok downloading public.ctn0094data_1.0.6.tar.gz ... ok downloading quarto_1.4.tar.gz ... ok downloading RWsearch_5.1.4.tar.gz ... ok downloading shinymeta_0.2.0.3.tar.gz ... ok downloading socialranking_1.1.0.tar.gz ... ok downloading webexercises_1.1.0.tar.gz ... ok installing dependencies ‘automagic’, ‘BayesLogit’, ‘bsicons’, ‘callr’, ‘cffr’, ‘cicerone’, ‘cld2’, ‘cld3’, ‘cleanrmd’, ‘clinUtils’, ‘codemetar’, ‘ctv’, ‘distill’, ‘findR’, ‘foghorn’, ‘FSA’, ‘gpg’, ‘hdm’, ‘inTextSummaryTable’, ‘jinjar’, ‘JuliaCall’, ‘katex’, ‘keys’, ‘latexpdf’, ‘lintr’, ‘logr’, ‘maftools’, ‘Microsoft365R’, ‘missRanger’, ‘NMdata’, ‘otp’, ‘pak’, ‘papaja’, ‘patientProfilesVis’, ‘phia’, ‘prereg’, ‘qpdf’, ‘rcompanion’, ‘rebib’, ‘relations’, ‘revealjs’, ‘rgrass’, ‘rhub’, ‘rjtools’, ‘rUM’, ‘sig’, ‘sos’, ‘soundgen’, ‘targets’, ‘tidyvpc’, ‘tracee’, ‘vcdExtra’, ‘xaringan’, ‘xfun’ also installing the dependencies ‘codemeta’, ‘secretbase’, ‘common’, ‘dunn.test’, ‘phonTools’, ‘nonlinearTseries’, ‘tinylabels’, ‘rmdfiltr’ begin installing package ‘codemeta’ begin installing package ‘secretbase’ begin installing package ‘common’ begin installing package ‘dunn.test’ begin installing package ‘phonTools’ begin installing package ‘nonlinearTseries’ begin installing package ‘tinylabels’ begin installing package ‘xfun’ begin installing package ‘pak’ begin installing package ‘keys’ begin installing package ‘cld2’ begin installing package ‘cld3’ begin installing package ‘gpg’ begin installing package ‘jinjar’ begin installing package ‘Microsoft365R’ begin installing package ‘rgrass’ begin installing package ‘katex’ begin installing package ‘NMdata’ begin installing package ‘tidyvpc’ begin installing package ‘bsicons’ begin installing package ‘cffr’ begin installing package ‘cicerone’ begin installing package ‘callr’ begin installing package ‘rcompanion’ begin installing package ‘missRanger’ begin installing package ‘BayesLogit’ begin installing package ‘hdm’ begin installing package ‘maftools’ * installing *source* package ‘codemeta’ ... ** package ‘codemeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (codemeta) begin installing package ‘otp’ * installing *source* package ‘missRanger’ ... ** package ‘missRanger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missRanger) begin installing package ‘vcdExtra’ * installing *source* package ‘tinylabels’ ... ** package ‘tinylabels’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinylabels) begin installing package ‘latexpdf’ * installing *source* package ‘bsicons’ ... ** package ‘bsicons’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bsicons) begin installing package ‘sig’ * installing *source* package ‘dunn.test’ ... ** package ‘dunn.test’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dunn.test) begin installing package ‘sos’ * installing *source* package ‘keys’ ... ** package ‘keys’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (keys) begin installing package ‘ctv’ * installing *source* package ‘katex’ ... ** package ‘katex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (katex) begin installing package ‘qpdf’ * installing *source* package ‘secretbase’ ... ** package ‘secretbase’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphOasZw/R.INSTALL2b92a7d795621/secretbase/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c secret.c -o secret.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c secret2.c -o secret2.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o secretbase.so init.o secret.o secret2.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphOasZw/R.INSTALL2b92a7d795621/secretbase/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-secretbase/00new/secretbase/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (secretbase) begin installing package ‘foghorn’ * installing *source* package ‘common’ ... ** package ‘common’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (common) begin installing package ‘relations’ * installing *source* package ‘cicerone’ ... ** package ‘cicerone’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cicerone) begin installing package ‘codemetar’ * installing *source* package ‘gpg’ ... ** package ‘gpg’ successfully unpacked and MD5 sums checked ** using staged installation Using PKG_CFLAGS= Using PKG_LIBS=-lgpgme ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpA8bWH8/R.INSTALL2b97156bfb3cf/gpg/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c encrypt.c -o encrypt.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c engine.c -o engine.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keys.c -o keys.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keysig.c -o keysig.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c options.c -o options.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sign.c -o sign.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o gpg.so encrypt.o engine.o keys.o keysig.o options.o register.o sign.o -lgpgme -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpA8bWH8/R.INSTALL2b97156bfb3cf/gpg/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-gpg/00new/gpg/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gpg) begin installing package ‘logr’ * installing *source* package ‘rgrass’ ... ** package ‘rgrass’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgrass) * installing *source* package ‘sig’ ... ** package ‘sig’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sig) * installing *source* package ‘latexpdf’ ... ** package ‘latexpdf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (latexpdf) * installing *source* package ‘ctv’ ... ** package ‘ctv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ctv) * installing *source* package ‘sos’ ... ** package ‘sos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sos) * installing *source* package ‘hdm’ ... ** package ‘hdm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdm) * installing *source* package ‘otp’ ... ** package ‘otp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (otp) * installing *source* package ‘logr’ ... ** package ‘logr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (logr) * installing *source* package ‘phonTools’ ... ** package ‘phonTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phonTools) * installing *source* package ‘cffr’ ... ** package ‘cffr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cffr) * installing *source* package ‘xfun’ ... ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0rgiC9/R.INSTALL2b94499db422/xfun/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o xfun.so base64.o init.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0rgiC9/R.INSTALL2b94499db422/xfun/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-xfun/00new/xfun/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xfun) begin installing package ‘rmdfiltr’ begin installing package ‘clinUtils’ begin installing package ‘JuliaCall’ begin installing package ‘revealjs’ begin installing package ‘cleanrmd’ begin installing package ‘prereg’ begin installing package ‘automagic’ begin installing package ‘xaringan’ begin installing package ‘distill’ begin installing package ‘rebib’ * installing *source* package ‘foghorn’ ... ** package ‘foghorn’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foghorn) * installing *source* package ‘callr’ ... ** package ‘callr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (callr) begin installing package ‘phia’ begin installing package ‘rUM’ begin installing package ‘lintr’ * installing *source* package ‘codemetar’ ... ** package ‘codemetar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (codemetar) begin installing package ‘rhub’ * installing *source* package ‘rmdfiltr’ ... ** package ‘rmdfiltr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmdfiltr) begin installing package ‘targets’ * installing *source* package ‘prereg’ ... ** package ‘prereg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prereg) begin installing package ‘FSA’ * installing *source* package ‘automagic’ ... ** package ‘automagic’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (automagic) begin installing package ‘papaja’ * installing *source* package ‘BayesLogit’ ... ** package ‘BayesLogit’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2TeMRI/R.INSTALL2b991408f1730/BayesLogit/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c InvertY.cpp -o InvertY.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PolyaGamma.cpp -o PolyaGamma.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PolyaGammaApproxAlt.cpp -o PolyaGammaApproxAlt.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PolyaGammaApproxSP.cpp -o PolyaGammaApproxSP.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inverse_gaussian.cpp -o inverse_gaussian.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c polyagamma_wrapper.cpp -o polyagamma_wrapper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c truncated_gamma.cpp -o truncated_gamma.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DUSE_R -DNDEBUG -DNTHROW -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c truncated_norm.cpp -o truncated_norm.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o BayesLogit.so InvertY.o PolyaGamma.o PolyaGammaApproxAlt.o PolyaGammaApproxSP.o init.o inverse_gaussian.o polyagamma_wrapper.o truncated_gamma.o truncated_norm.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2TeMRI/R.INSTALL2b991408f1730/BayesLogit/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-BayesLogit/00new/BayesLogit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesLogit) * installing *source* package ‘cleanrmd’ ... ** package ‘cleanrmd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cleanrmd) * installing *source* package ‘revealjs’ ... ** package ‘revealjs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (revealjs) * installing *source* package ‘rebib’ ... ** package ‘rebib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rebib) * installing *source* package ‘xaringan’ ... ** package ‘xaringan’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xaringan) * installing *source* package ‘NMdata’ ... ** package ‘NMdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NMdata) begin installing package ‘tracee’ * installing *source* package ‘rUM’ ... ** package ‘rUM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rUM) * installing *source* package ‘relations’ ... ** package ‘relations’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (relations) * installing *source* package ‘distill’ ... ** package ‘distill’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distill) begin installing package ‘rjtools’ * installing *source* package ‘tidyvpc’ ... ** package ‘tidyvpc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyvpc) * installing *source* package ‘clinUtils’ ... ** package ‘clinUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clinUtils) begin installing package ‘inTextSummaryTable’ begin installing package ‘patientProfilesVis’ * installing *source* package ‘rhub’ ... ** package ‘rhub’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhub) * installing *source* package ‘vcdExtra’ ... ** package ‘vcdExtra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vcdExtra) * installing *source* package ‘phia’ ... ** package ‘phia’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phia) * installing *source* package ‘Microsoft365R’ ... ** package ‘Microsoft365R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Microsoft365R) * installing *source* package ‘rcompanion’ ... ** package ‘rcompanion’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcompanion) * installing *source* package ‘lintr’ ... ** package ‘lintr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lintr) * installing *source* package ‘rjtools’ ... ** package ‘rjtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rjtools) * installing *source* package ‘papaja’ ... ** package ‘papaja’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (papaja) * installing *source* package ‘tracee’ ... ** package ‘tracee’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tracee) * installing *source* package ‘FSA’ ... ** package ‘FSA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FSA) * installing *source* package ‘patientProfilesVis’ ... ** package ‘patientProfilesVis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (patientProfilesVis) * installing *source* package ‘maftools’ ... ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCOuF0i/R.INSTALL2b99b3965d185/maftools/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ntcounts.c -o ntcounts.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snpcounts.c -o snpcounts.o snpcounts.c: In function ‘snpcounts’: snpcounts.c:89:47: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 89 | fprintf(tsv_fp, "#idxstats_mapped_reads\t%llu\n", tot_mapped); | ~~~^ ~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c somaticfreq.c -o somaticfreq.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o maftools.so ntcounts.o snpcounts.o somaticfreq.o /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCOuF0i/R.INSTALL2b99b3965d185/maftools/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-maftools/00new/maftools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maftools) * installing *source* package ‘JuliaCall’ ... ** package ‘JuliaCall’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLdXbLD/R.INSTALL2c3bab486691/JuliaCall/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c JuliaCall.cpp -o JuliaCall.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libjulia.cpp -o libjulia.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o JuliaCall.so JuliaCall.o RcppExports.o libjulia.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLdXbLD/R.INSTALL2c3bab486691/JuliaCall/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-JuliaCall/00new/JuliaCall/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JuliaCall) * installing *source* package ‘inTextSummaryTable’ ... ** package ‘inTextSummaryTable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inTextSummaryTable) * installing *source* package ‘cld2’ ... ** package ‘cld2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8ZZwb1/R.INSTALL2b95227ccf1c7/cld2/src' rm -f cld2.so RcppExports.o wrapper.o libcld2/internal/cldutil.o libcld2/internal/cldutil_shared.o libcld2/internal/compact_lang_det.o libcld2/internal/compact_lang_det_hint_code.o libcld2/internal/compact_lang_det_impl.o libcld2/internal/debug.o libcld2/internal/fixunicodevalue.o libcld2/internal/generated_entities.o libcld2/internal/generated_language.o libcld2/internal/generated_ulscript.o libcld2/internal/getonescriptspan.o libcld2/internal/lang_script.o libcld2/internal/offsetmap.o libcld2/internal/scoreonescriptspan.o libcld2/internal/tote.o libcld2/internal/utf8statetable.o libcld2/internal/cld_generated_cjk_uni_prop_80.o libcld2/internal/cld2_generated_cjk_compatible.o libcld2/internal/cld_generated_cjk_delta_bi_4.o libcld2/internal/generated_distinct_bi_0.o libcld2/internal/cld2_generated_quadchrome_2.o libcld2/internal/cld2_generated_deltaoctachrome.o libcld2/internal/cld2_generated_distinctoctachrome.o libcld2/internal/cld_generated_score_quad_octa_2.o libcld2/libstatcld2.a g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper.cpp -o wrapper.o wrapper.cpp: In function ‘Rcpp::CharacterVector detect_language_cc(Rcpp::CharacterVector, bool, bool)’: wrapper.cpp:12:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 12 | for(size_t i = 0; i < input.length(); i++){ | ~~^~~~~~~~~~~~~~~~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cldutil.cc -o libcld2/internal/cldutil.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cldutil_shared.cc -o libcld2/internal/cldutil_shared.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det.cc -o libcld2/internal/compact_lang_det.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det_hint_code.cc -o libcld2/internal/compact_lang_det_hint_code.o libcld2/internal/compact_lang_det_hint_code.cc: In function ‘std::string CLD2::TrimCLDLangTagsHint(const std::string&)’: libcld2/internal/compact_lang_det_hint_code.cc:1060:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1060 | if (comma == string::npos) {comma = langtags.size();} // fake trailing comma | ~~~~~~^~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_hint_code.cc: In function ‘void CLD2::SetCLDLangTagsHint(const std::string&, CLDLangPriors*)’: libcld2/internal/compact_lang_det_hint_code.cc:1403:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1403 | if (comma == string::npos) {comma = langtags.size();} // fake trailing comma | ~~~~~~^~~~~~~~~~~~~~~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det_impl.cc -o libcld2/internal/compact_lang_det_impl.o libcld2/internal/compact_lang_det_impl.cc: In function ‘void CLD2::CalcSummaryLang(DocTote*, int, const int*, const Language*, const int*, Language*, bool*, bool, bool, int)’: libcld2/internal/compact_lang_det_impl.cc:1455:7: warning: unused variable ‘plang_second’ [-Wunused-variable] 1455 | int plang_second = PerScriptNumber(ULScript_Latin, language3[active_slot[1]]); | ^~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc: In function ‘CLD2::Language CLD2::DetectLanguageSummaryV2(const char*, int, bool, const CLDHints*, bool, int, Language, Language*, int*, double*, ResultChunkVector*, int*, bool*)’: libcld2/internal/compact_lang_det_impl.cc:1849:14: warning: unused variable ‘ulscript’ [-Wunused-variable] 1849 | ULScript ulscript = scriptspan.ulscript; | ^~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1788:7: warning: unused variable ‘next_other_tote’ [-Wunused-variable] 1788 | int next_other_tote = 2; | ^~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1789:7: warning: unused variable ‘tote_num’ [-Wunused-variable] 1789 | int tote_num = 0; | ^~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1793:8: warning: unused variable ‘tote_seen’ [-Wunused-variable] 1793 | bool tote_seen[4] = {false, false, false, false}; | ^~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1794:7: warning: unused variable ‘tote_grams’ [-Wunused-variable] 1794 | int tote_grams[4] = {0, 0, 0, 0}; // Number in partial chunk | ^~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1795:12: warning: unused variable ‘tote_script’ [-Wunused-variable] 1795 | ULScript tote_script[4] = | ^~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1814:7: warning: unused variable ‘advance_by’ [-Wunused-variable] 1814 | int advance_by = 2; // Advance 2 bytes | ^~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1815:7: warning: unused variable ‘advance_limit’ [-Wunused-variable] 1815 | int advance_limit = textlimit >> 3; // For first 1/8 of max document | ^~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1817:7: warning: variable ‘initial_word_span’ set but not used [-Wunused-but-set-variable] 1817 | int initial_word_span = kDefaultWordSpan; | ^~~~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1828:7: warning: unused variable ‘chunksizeunis’ [-Wunused-variable] 1828 | int chunksizeunis = (chunksizequads * 5) >> 1; | ^~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1832:7: warning: unused variable ‘spantooshortlimit’ [-Wunused-variable] 1832 | int spantooshortlimit = kShortSpanThresh; | ^~~~~~~~~~~~~~~~~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/debug.cc -o libcld2/internal/debug.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/fixunicodevalue.cc -o libcld2/internal/fixunicodevalue.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_entities.cc -o libcld2/internal/generated_entities.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_language.cc -o libcld2/internal/generated_language.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_ulscript.cc -o libcld2/internal/generated_ulscript.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/getonescriptspan.cc -o libcld2/internal/getonescriptspan.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/lang_script.cc -o libcld2/internal/lang_script.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/offsetmap.cc -o libcld2/internal/offsetmap.o libcld2/internal/offsetmap.cc: In member function ‘void CLD2::OffsetMap::Printmap(const char*)’: libcld2/internal/offsetmap.cc:84:43: warning: array subscript has type ‘char’ [-Wchar-subscripts] 84 | fprintf(fout, "%c%02d ", "&=+-"[OpPart(diffs_[i])], LenPart(diffs_[i])); | ~~~~~~^~~~~~~~~~~ libcld2/internal/offsetmap.cc: In member function ‘void CLD2::OffsetMap::DumpString()’: libcld2/internal/offsetmap.cc:210:45: warning: array subscript has type ‘char’ [-Wchar-subscripts] 210 | fprintf(stderr, "%c%02d ", "&=+-"[OpPart(diffs_[i])], LenPart(diffs_[i])); | ~~~~~~^~~~~~~~~~~ libcld2/internal/offsetmap.cc: In member function ‘bool CLD2::OffsetMap::MoveLeft()’: libcld2/internal/offsetmap.cc:404:8: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 404 | bool retval = true; | ^~~~~~ libcld2/internal/offsetmap.cc: In static member function ‘static bool CLD2::OffsetMap::CopyInserts(CLD2::OffsetMap*, CLD2::OffsetMap*)’: libcld2/internal/offsetmap.cc:484:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 484 | while (ok && (source->next_diff_sub_ != source->diffs_.size())) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ libcld2/internal/offsetmap.cc: In static member function ‘static bool CLD2::OffsetMap::CopyDeletes(CLD2::OffsetMap*, CLD2::OffsetMap*)’: libcld2/internal/offsetmap.cc:498:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 498 | while (ok && (source->next_diff_sub_ != source->diffs_.size())) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/scoreonescriptspan.cc -o libcld2/internal/scoreonescriptspan.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/tote.cc -o libcld2/internal/tote.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/utf8statetable.cc -o libcld2/internal/utf8statetable.o libcld2/internal/utf8statetable.cc: In function ‘int CLD2::UTF8GenericReplaceInternalTwoByte(const UTF8ReplaceObj_2*, const StringPiece&, StringPiece&, bool, int*, int*, int*, OffsetMap*)’: libcld2/internal/utf8statetable.cc:905:7: warning: variable ‘src_lll’ set but not used [-Wunused-but-set-variable] 905 | int src_lll = srclimit - src; | ^~~~~~~ libcld2/internal/utf8statetable.cc:906:7: warning: variable ‘dst_lll’ set but not used [-Wunused-but-set-variable] 906 | int dst_lll = dstlimit - dst; | ^~~~~~~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_cjk_uni_prop_80.cc -o libcld2/internal/cld_generated_cjk_uni_prop_80.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_cjk_compatible.cc -o libcld2/internal/cld2_generated_cjk_compatible.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_cjk_delta_bi_4.cc -o libcld2/internal/cld_generated_cjk_delta_bi_4.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_distinct_bi_0.cc -o libcld2/internal/generated_distinct_bi_0.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_quadchrome_2.cc -o libcld2/internal/cld2_generated_quadchrome_2.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_deltaoctachrome.cc -o libcld2/internal/cld2_generated_deltaoctachrome.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_distinctoctachrome.cc -o libcld2/internal/cld2_generated_distinctoctachrome.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_score_quad_octa_2.cc -o libcld2/internal/cld_generated_score_quad_octa_2.o ar rcs libcld2/libstatcld2.a libcld2/internal/cldutil.o libcld2/internal/cldutil_shared.o libcld2/internal/compact_lang_det.o libcld2/internal/compact_lang_det_hint_code.o libcld2/internal/compact_lang_det_impl.o libcld2/internal/debug.o libcld2/internal/fixunicodevalue.o libcld2/internal/generated_entities.o libcld2/internal/generated_language.o libcld2/internal/generated_ulscript.o libcld2/internal/getonescriptspan.o libcld2/internal/lang_script.o libcld2/internal/offsetmap.o libcld2/internal/scoreonescriptspan.o libcld2/internal/tote.o libcld2/internal/utf8statetable.o libcld2/internal/cld_generated_cjk_uni_prop_80.o libcld2/internal/cld2_generated_cjk_compatible.o libcld2/internal/cld_generated_cjk_delta_bi_4.o libcld2/internal/generated_distinct_bi_0.o libcld2/internal/cld2_generated_quadchrome_2.o libcld2/internal/cld2_generated_deltaoctachrome.o libcld2/internal/cld2_generated_distinctoctachrome.o libcld2/internal/cld_generated_score_quad_octa_2.o g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o cld2.so RcppExports.o wrapper.o -Llibcld2 -lstatcld2 -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8ZZwb1/R.INSTALL2b95227ccf1c7/cld2/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-cld2/00new/cld2/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cld2) * installing *source* package ‘targets’ ... ** package ‘targets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (targets) * installing *source* package ‘jinjar’ ... ** package ‘jinjar’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp31K4SJ/R.INSTALL2b96c5bec1688/jinjar/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c condition.cpp -o condition.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c loader.cpp -o loader.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c render.cpp -o render.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c template.cpp -o template.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o jinjar.so condition.o cpp11.o loader.o render.o template.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp31K4SJ/R.INSTALL2b96c5bec1688/jinjar/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-jinjar/00new/jinjar/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jinjar) * installing *source* package ‘cld3’ ... ** package ‘cld3’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lprotobuf Found C++17 compiler: g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native Using libprotoc 3.21.12 from /usr/bin/protoc protoc version libprotoc 3.21.12 matches libproto version 3.21.12 ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph6i1FF/R.INSTALL2b978303eb05f/cld3/src' rm -f cld3.so RcppExports.o wrapper.o libcld3/base.o libcld3/embedding_feature_extractor.o libcld3/embedding_network.o libcld3/feature_extractor.o libcld3/feature_types.o libcld3/fml_parser.o libcld3/language_identifier_features.o libcld3/lang_id_nn_params.o libcld3/nnet_language_identifier.o libcld3/registry.o libcld3/relevant_script_feature.o libcld3/sentence_features.o libcld3/script_span/fixunicodevalue.o libcld3/script_span/generated_entities.o libcld3/script_span/generated_ulscript.o libcld3/script_span/getonescriptspan.o libcld3/script_span/offsetmap.o libcld3/script_span/text_processing.o libcld3/script_span/utf8statetable.o libcld3/task_context.o libcld3/task_context_params.o libcld3/unicodetext.o libcld3/utils.o libcld3/workspace.o cld_3/protos/feature_extractor.pb.o cld_3/protos/sentence.pb.o cld_3/protos/task_spec.pb.o libcld3/libstatcld3.a g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper.cpp -o wrapper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/base.cc -o libcld3/base.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/embedding_feature_extractor.cc -o libcld3/embedding_feature_extractor.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/embedding_network.cc -o libcld3/embedding_network.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/feature_extractor.cc -o libcld3/feature_extractor.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/feature_types.cc -o libcld3/feature_types.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/fml_parser.cc -o libcld3/fml_parser.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/language_identifier_features.cc -o libcld3/language_identifier_features.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/lang_id_nn_params.cc -o libcld3/lang_id_nn_params.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/nnet_language_identifier.cc -o libcld3/nnet_language_identifier.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/registry.cc -o libcld3/registry.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/relevant_script_feature.cc -o libcld3/relevant_script_feature.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/sentence_features.cc -o libcld3/sentence_features.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/fixunicodevalue.cc -o libcld3/script_span/fixunicodevalue.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/generated_entities.cc -o libcld3/script_span/generated_entities.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/generated_ulscript.cc -o libcld3/script_span/generated_ulscript.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/getonescriptspan.cc -o libcld3/script_span/getonescriptspan.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/offsetmap.cc -o libcld3/script_span/offsetmap.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/text_processing.cc -o libcld3/script_span/text_processing.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/utf8statetable.cc -o libcld3/script_span/utf8statetable.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/task_context.cc -o libcld3/task_context.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/task_context_params.cc -o libcld3/task_context_params.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/unicodetext.cc -o libcld3/unicodetext.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/utils.cc -o libcld3/utils.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/workspace.cc -o libcld3/workspace.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cld_3/protos/feature_extractor.pb.cc -o cld_3/protos/feature_extractor.pb.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cld_3/protos/sentence.pb.cc -o cld_3/protos/sentence.pb.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cld_3/protos/task_spec.pb.cc -o cld_3/protos/task_spec.pb.o ar rcs libcld3/libstatcld3.a libcld3/base.o libcld3/embedding_feature_extractor.o libcld3/embedding_network.o libcld3/feature_extractor.o libcld3/feature_types.o libcld3/fml_parser.o libcld3/language_identifier_features.o libcld3/lang_id_nn_params.o libcld3/nnet_language_identifier.o libcld3/registry.o libcld3/relevant_script_feature.o libcld3/sentence_features.o libcld3/script_span/fixunicodevalue.o libcld3/script_span/generated_entities.o libcld3/script_span/generated_ulscript.o libcld3/script_span/getonescriptspan.o libcld3/script_span/offsetmap.o libcld3/script_span/text_processing.o libcld3/script_span/utf8statetable.o libcld3/task_context.o libcld3/task_context_params.o libcld3/unicodetext.o libcld3/utils.o libcld3/workspace.o cld_3/protos/feature_extractor.pb.o cld_3/protos/sentence.pb.o cld_3/protos/task_spec.pb.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o cld3.so RcppExports.o wrapper.o -Llibcld3 -lstatcld3 -lprotobuf -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph6i1FF/R.INSTALL2b978303eb05f/cld3/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-cld3/00new/cld3/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cld3) * installing *source* package ‘nonlinearTseries’ ... ** package ‘nonlinearTseries’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFvdLXz/R.INSTALL2b9454ce5cf22/nonlinearTseries/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ANN.cpp -o ANN.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DFA.cpp -o DFA.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NN.cpp -o NN.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bd_pr_search.cpp -o bd_pr_search.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bd_search.cpp -o bd_search.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bd_tree.cpp -o bd_tree.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c brute.cpp -o brute.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c corr_dim.cpp -o corr_dim.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c generic_functions.cpp -o generic_functions.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c information_dimension.cpp -o information_dimension.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_dump.cpp -o kd_dump.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_pr_search.cpp -o kd_pr_search.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_search.cpp -o kd_search.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_split.cpp -o kd_split.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_tree.cpp -o kd_tree.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kd_util.cpp -o kd_util.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lyapunov_exponent.cpp -o lyapunov_exponent.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mutual_information.cpp -o mutual_information.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c neighbour_search.cpp -o neighbour_search.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c neighbour_search_wrapper.cpp -o neighbour_search_wrapper.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nonlinear_noise_reduction.cpp -o nonlinear_noise_reduction.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c poincare_map.cpp -o poincare_map.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rqa.cpp -o rqa.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c space_time_plot.cpp -o space_time_plot.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I. -IANN -DRANN -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o nonlinearTseries.so ANN.o DFA.o NN.o RcppExports.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o corr_dim.o generic_functions.o information_dimension.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o lyapunov_exponent.o mutual_information.o neighbour_search.o neighbour_search_wrapper.o nonlinear_noise_reduction.o poincare_map.o rqa.o space_time_plot.o utils.o -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFvdLXz/R.INSTALL2b9454ce5cf22/nonlinearTseries/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-nonlinearTseries/00new/nonlinearTseries/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nonlinearTseries) begin installing package ‘soundgen’ * installing *source* package ‘soundgen’ ... ** package ‘soundgen’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (soundgen) * installing *source* package ‘qpdf’ ... ** package ‘qpdf’ successfully unpacked and MD5 sums checked ** using staged installation Using bundled qpdf (recommended) ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnkxP5W/R.INSTALL2bfbd3d4b76ed/qpdf/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c bindings.cpp -o bindings.o bindings.cpp: In function ‘Rcpp::CharacterVector cpp_pdf_split(const char*, std::string, const char*)’: bindings.cpp:44:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 44 | for (int i = 0; i < pages.size(); i++) { | ~~^~~~~~~~~~~~~~ bindings.cpp: In function ‘Rcpp::CharacterVector cpp_pdf_combine(Rcpp::CharacterVector, const char*, const char*)’: bindings.cpp:87:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 87 | for (int i = 0; i < pages.size(); i++) { | ~~^~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/BitStream.cc -o libqpdf/BitStream.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/BitWriter.cc -o libqpdf/BitWriter.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Buffer.cc -o libqpdf/Buffer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/BufferInputSource.cc -o libqpdf/BufferInputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/ClosedFileInputSource.cc -o libqpdf/ClosedFileInputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/ContentNormalizer.cc -o libqpdf/ContentNormalizer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/FileInputSource.cc -o libqpdf/FileInputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/InputSource.cc -o libqpdf/InputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/InsecureRandomDataProvider.cc -o libqpdf/InsecureRandomDataProvider.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/JSON.cc -o libqpdf/JSON.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/MD5.cc -o libqpdf/MD5.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/OffsetInputSource.cc -o libqpdf/OffsetInputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pipeline.cc -o libqpdf/Pipeline.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_AES_PDF.cc -o libqpdf/Pl_AES_PDF.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_ASCII85Decoder.cc -o libqpdf/Pl_ASCII85Decoder.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_ASCIIHexDecoder.cc -o libqpdf/Pl_ASCIIHexDecoder.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Buffer.cc -o libqpdf/Pl_Buffer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Concatenate.cc -o libqpdf/Pl_Concatenate.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Count.cc -o libqpdf/Pl_Count.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_DCT.cc -o libqpdf/Pl_DCT.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Discard.cc -o libqpdf/Pl_Discard.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Flate.cc -o libqpdf/Pl_Flate.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_LZWDecoder.cc -o libqpdf/Pl_LZWDecoder.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_MD5.cc -o libqpdf/Pl_MD5.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_PNGFilter.cc -o libqpdf/Pl_PNGFilter.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_QPDFTokenizer.cc -o libqpdf/Pl_QPDFTokenizer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_RC4.cc -o libqpdf/Pl_RC4.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_RunLength.cc -o libqpdf/Pl_RunLength.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_SHA2.cc -o libqpdf/Pl_SHA2.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_StdioFile.cc -o libqpdf/Pl_StdioFile.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_TIFFPredictor.cc -o libqpdf/Pl_TIFFPredictor.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Array.cc -o libqpdf/QPDF_Array.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Bool.cc -o libqpdf/QPDF_Bool.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Dictionary.cc -o libqpdf/QPDF_Dictionary.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_encryption.cc -o libqpdf/QPDF_encryption.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_InlineImage.cc -o libqpdf/QPDF_InlineImage.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Integer.cc -o libqpdf/QPDF_Integer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_linearization.cc -o libqpdf/QPDF_linearization.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Name.cc -o libqpdf/QPDF_Name.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Null.cc -o libqpdf/QPDF_Null.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Operator.cc -o libqpdf/QPDF_Operator.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_optimization.cc -o libqpdf/QPDF_optimization.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_pages.cc -o libqpdf/QPDF_pages.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Real.cc -o libqpdf/QPDF_Real.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Reserved.cc -o libqpdf/QPDF_Reserved.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Stream.cc -o libqpdf/QPDF_Stream.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_String.cc -o libqpdf/QPDF_String.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/qpdf-c.cc -o libqpdf/qpdf-c.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF.cc -o libqpdf/QPDF.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFAcroFormDocumentHelper.cc -o libqpdf/QPDFAcroFormDocumentHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFAnnotationObjectHelper.cc -o libqpdf/QPDFAnnotationObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFExc.cc -o libqpdf/QPDFExc.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFFormFieldObjectHelper.cc -o libqpdf/QPDFFormFieldObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFMatrix.cc -o libqpdf/QPDFMatrix.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFNameTreeObjectHelper.cc -o libqpdf/QPDFNameTreeObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFNumberTreeObjectHelper.cc -o libqpdf/QPDFNumberTreeObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFObject.cc -o libqpdf/QPDFObject.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFObjectHandle.cc -o libqpdf/QPDFObjectHandle.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFObjGen.cc -o libqpdf/QPDFObjGen.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFOutlineDocumentHelper.cc -o libqpdf/QPDFOutlineDocumentHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFOutlineObjectHelper.cc -o libqpdf/QPDFOutlineObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFPageDocumentHelper.cc -o libqpdf/QPDFPageDocumentHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFPageLabelDocumentHelper.cc -o libqpdf/QPDFPageLabelDocumentHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFPageObjectHelper.cc -o libqpdf/QPDFPageObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFSystemError.cc -o libqpdf/QPDFSystemError.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFTokenizer.cc -o libqpdf/QPDFTokenizer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFWriter.cc -o libqpdf/QPDFWriter.o libqpdf/QPDFWriter.cc: In member function ‘void QPDFWriter::writeLinearized()’: libqpdf/QPDFWriter.cc:3089:9: warning: unused variable ‘after_part4’ [-Wunused-variable] 3089 | int after_part4 = this->m->next_objid; | ^~~~~~~~~~~ libqpdf/QPDFWriter.cc:3097:9: warning: unused variable ‘after_part6’ [-Wunused-variable] 3097 | int after_part6 = this->m->next_objid; | ^~~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFXRefEntry.cc -o libqpdf/QPDFXRefEntry.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QTC.cc -o libqpdf/QTC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QUtil.cc -o libqpdf/QUtil.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/RC4.cc -o libqpdf/RC4.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/rijndael.cc -o libqpdf/rijndael.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/SecureRandomDataProvider.cc -o libqpdf/SecureRandomDataProvider.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libqpdf/sha2.c -o libqpdf/sha2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libqpdf/sha2big.c -o libqpdf/sha2big.o ar rcs libqpdf/libstatqpdf.a libqpdf/BitStream.o libqpdf/BitWriter.o libqpdf/Buffer.o libqpdf/BufferInputSource.o libqpdf/ClosedFileInputSource.o libqpdf/ContentNormalizer.o libqpdf/FileInputSource.o libqpdf/InputSource.o libqpdf/InsecureRandomDataProvider.o libqpdf/JSON.o libqpdf/MD5.o libqpdf/OffsetInputSource.o libqpdf/Pipeline.o libqpdf/Pl_AES_PDF.o libqpdf/Pl_ASCII85Decoder.o libqpdf/Pl_ASCIIHexDecoder.o libqpdf/Pl_Buffer.o libqpdf/Pl_Concatenate.o libqpdf/Pl_Count.o libqpdf/Pl_DCT.o libqpdf/Pl_Discard.o libqpdf/Pl_Flate.o libqpdf/Pl_LZWDecoder.o libqpdf/Pl_MD5.o libqpdf/Pl_PNGFilter.o libqpdf/Pl_QPDFTokenizer.o libqpdf/Pl_RC4.o libqpdf/Pl_RunLength.o libqpdf/Pl_SHA2.o libqpdf/Pl_StdioFile.o libqpdf/Pl_TIFFPredictor.o libqpdf/QPDF_Array.o libqpdf/QPDF_Bool.o libqpdf/QPDF_Dictionary.o libqpdf/QPDF_encryption.o libqpdf/QPDF_InlineImage.o libqpdf/QPDF_Integer.o libqpdf/QPDF_linearization.o libqpdf/QPDF_Name.o libqpdf/QPDF_Null.o libqpdf/QPDF_Operator.o libqpdf/QPDF_optimization.o libqpdf/QPDF_pages.o libqpdf/QPDF_Real.o libqpdf/QPDF_Reserved.o libqpdf/QPDF_Stream.o libqpdf/QPDF_String.o libqpdf/qpdf-c.o libqpdf/QPDF.o libqpdf/QPDFAcroFormDocumentHelper.o libqpdf/QPDFAnnotationObjectHelper.o libqpdf/QPDFExc.o libqpdf/QPDFFormFieldObjectHelper.o libqpdf/QPDFMatrix.o libqpdf/QPDFNameTreeObjectHelper.o libqpdf/QPDFNumberTreeObjectHelper.o libqpdf/QPDFObject.o libqpdf/QPDFObjectHandle.o libqpdf/QPDFObjGen.o libqpdf/QPDFOutlineDocumentHelper.o libqpdf/QPDFOutlineObjectHelper.o libqpdf/QPDFPageDocumentHelper.o libqpdf/QPDFPageLabelDocumentHelper.o libqpdf/QPDFPageObjectHelper.o libqpdf/QPDFSystemError.o libqpdf/QPDFTokenizer.o libqpdf/QPDFWriter.o libqpdf/QPDFXRefEntry.o libqpdf/QTC.o libqpdf/QUtil.o libqpdf/RC4.o libqpdf/rijndael.o libqpdf/SecureRandomDataProvider.o libqpdf/sha2.o libqpdf/sha2big.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o qpdf.so RcppExports.o bindings.o -Llibqpdf -lstatqpdf -ljpeg -lz -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnkxP5W/R.INSTALL2bfbd3d4b76ed/qpdf/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-qpdf/00new/qpdf/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qpdf) begin installing package ‘findR’ * installing *source* package ‘pak’ ... ** package ‘pak’ successfully unpacked and MD5 sums checked ** using staged installation ** Running ./configure ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src' Current platform: x86_64-pc-linux-gnu Build platform: Target platform: Compiling R6 Compiling cli using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/cli/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ansi.c -o ansi.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diff.c -o diff.o diff.c: In function ‘clic_diff_chr’: diff.c:104:3: warning: ‘sn’ may be used uninitialized [-Wmaybe-uninitialized] 104 | SET_VECTOR_ELT(result, 0, allocVector(INTSXP, sn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff.c:85:7: note: ‘sn’ was declared here 85 | int sn; | ^~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glue.c -o glue.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c inst.c -o inst.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keypress-unix.c -o keypress-unix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keypress-win.c -o keypress-win.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keypress.c -o keypress.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c md5.c -o md5.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c progress-altrep.c -o progress-altrep.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c progress.c -o progress.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha1.c -o sha1.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha256.c -o sha256.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c thread.c -o thread.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tty.c -o tty.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utf8.c -o utf8.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vt.c -o vt.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtparse.c -o vtparse.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtparse_table.c -o vtparse_table.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c win-utf8.c -o win-utf8.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winfiles.c -o winfiles.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/cli/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/cli/libs Compiling curl Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu Using PKG_LIBS=-lcurl using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/curl/src' rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c callbacks.c -o callbacks.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c curl.c -o curl.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c download.c -o download.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c escape.c -o escape.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fetch.c -o fetch.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c findport.c -o findport.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c form.c -o form.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getdate.c -o getdate.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c handle.c -o handle.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ieproxy.c -o ieproxy.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c interrupt.c -o interrupt.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c multi.c -o multi.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nslookup.c -o nslookup.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c options.c -o options.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reflist.c -o reflist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c split.c -o split.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ssl.c -o ssl.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c typechecking.c -o typechecking.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c version.c -o version.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winidn.c -o winidn.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c writer.c -o writer.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/curl/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/curl/libs Compiling filelock using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/filelock/src' rm -f filelock.so init.o filelock-unix.o locklist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c filelock-unix.c -o filelock-unix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c locklist.c -o locklist.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o filelock.so init.o filelock-unix.o locklist.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/filelock/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/filelock/libs Compiling jsonlite using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/jsonlite/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_array.c -o collapse_array.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_object.c -o collapse_object.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_pretty.c -o collapse_pretty.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c escape_chars.c -o escape_chars.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c integer64_to_na.c -o integer64_to_na.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_datelist.c -o is_datelist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_recordlist.c -o is_recordlist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_scalarlist.c -o is_scalarlist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modp_numtoa.c -o modp_numtoa.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c null_to_na.c -o null_to_na.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c num_to_char.c -o num_to_char.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parse.c -o parse.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prettify.c -o prettify.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c push_parser.c -o push_parser.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-base64.c -o r-base64.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c row_collapse.c -o row_collapse.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c transpose_list.c -o transpose_list.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c validate.c -o validate.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl.c -o yajl/yajl.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_buf.c -o yajl/yajl_buf.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_encode.c -o yajl/yajl_encode.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_gen.c -o yajl/yajl_gen.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_lex.c -o yajl/yajl_lex.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_parser.c -o yajl/yajl_parser.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/jsonlite/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/jsonlite/libs in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” Compiling lpSolve using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/lpSolve/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colamd.c -o colamd.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c commonlib.c -o commonlib.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hbio.c -o hbio.o In file included from /usr/include/stdio.h:906, from hbio.h:4, from hbio.c:215: In function ‘fprintf’, inlined from ‘writeHB_mat_double’ at hbio.c:832:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘out_file’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ hbio.c: In function ‘writeHB_mat_double’: hbio.c:762:11: note: ‘out_file’ was declared here 762 | FILE *out_file; | ^~~~~~~~ In function ‘fprintf’, inlined from ‘writeHB_mat_char’ at hbio.c:1422:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘out_file’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ hbio.c: In function ‘writeHB_mat_char’: hbio.c:1357:11: note: ‘out_file’ was declared here 1357 | FILE *out_file; | ^~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ini.c -o ini.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isfixedvar.c -o isfixedvar.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_Hash.c -o lp_Hash.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_LUSOL.c -o lp_LUSOL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_MDO.c -o lp_MDO.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_MPS.c -o lp_MPS.o lp_MPS.c: In function ‘MPS_getnameidx.constprop’: lp_MPS.c:1532:9: warning: ‘in’ may be used uninitialized [-Wmaybe-uninitialized] 1532 | return( in ); | ^ lp_MPS.c:1502:7: note: ‘in’ declared here 1502 | int in; | ^~ In file included from /usr/include/stdio.h:906, from commonlib.h:5, from lp_MPS.c:5: In function ‘fprintf’, inlined from ‘MPS_writeBAS’ at lp_MPS.c:1687:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ lp_MPS.c: In function ‘MPS_writeBAS’: lp_MPS.c:1664:11: note: ‘output’ was declared here 1664 | FILE *output; /* = stdout; */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_SOS.c -o lp_SOS.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_crash.c -o lp_crash.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_lib.c -o lp_lib.o lp_lib.c: In function ‘set_BFP’: lp_lib.c:5185:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5185 | lp->bfp_compatible = (BFPbool_lpintintint *) | ^ lp_lib.c:5191:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5191 | lp->bfp_name = (BFPchar *) | ^ lp_lib.c:5193:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5193 | lp->bfp_free = (BFP_lp *) | ^ lp_lib.c:5195:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5195 | lp->bfp_resize = (BFPbool_lpint *) | ^ lp_lib.c:5197:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5197 | lp->bfp_nonzeros = (BFPint_lpbool *) | ^ lp_lib.c:5199:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5199 | lp->bfp_memallocated = (BFPint_lp *) | ^ lp_lib.c:5201:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5201 | lp->bfp_restart = (BFPbool_lp *) | ^ lp_lib.c:5203:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5203 | lp->bfp_mustrefactorize = (BFPbool_lp *) | ^ lp_lib.c:5205:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5205 | lp->bfp_preparefactorization = (BFPint_lp *) | ^ lp_lib.c:5207:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5207 | lp->bfp_factorize = (BFPint_lpintintboolbool *) | ^ lp_lib.c:5209:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5209 | lp->bfp_finishupdate = (BFPbool_lpbool *) | ^ lp_lib.c:5211:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5211 | lp->bfp_ftran_normal = (BFP_lprealint *) | ^ lp_lib.c:5213:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5213 | lp->bfp_ftran_prepare = (BFP_lprealint *) | ^ lp_lib.c:5215:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5215 | lp->bfp_btran_normal = (BFP_lprealint *) | ^ lp_lib.c:5217:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5217 | lp->bfp_status = (BFPint_lp *) | ^ lp_lib.c:5219:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5219 | lp->bfp_implicitslack = (BFPbool_lp *) | ^ lp_lib.c:5221:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5221 | lp->bfp_indexbase = (BFPint_lp *) | ^ lp_lib.c:5223:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5223 | lp->bfp_rowoffset = (BFPint_lp *) | ^ lp_lib.c:5225:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5225 | lp->bfp_pivotmax = (BFPint_lp *) | ^ lp_lib.c:5227:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5227 | lp->bfp_init = (BFPbool_lpintintchar *) | ^ lp_lib.c:5229:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5229 | lp->bfp_pivotalloc = (BFPbool_lpint *) | ^ lp_lib.c:5231:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5231 | lp->bfp_colcount = (BFPint_lp *) | ^ lp_lib.c:5233:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5233 | lp->bfp_canresetbasis = (BFPbool_lp *) | ^ lp_lib.c:5235:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5235 | lp->bfp_finishfactorization = (BFP_lp *) | ^ lp_lib.c:5237:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5237 | lp->bfp_updaterefactstats = (BFP_lp *) | ^ lp_lib.c:5239:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5239 | lp->bfp_prepareupdate = (BFPlreal_lpintintreal *) | ^ lp_lib.c:5241:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5241 | lp->bfp_pivotRHS = (BFPreal_lplrealreal *) | ^ lp_lib.c:5243:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5243 | lp->bfp_btran_double = (BFP_lprealintrealint *) | ^ lp_lib.c:5245:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5245 | lp->bfp_efficiency = (BFPreal_lp *) | ^ lp_lib.c:5247:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5247 | lp->bfp_pivotvector = (BFPrealp_lp *) | ^ lp_lib.c:5249:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5249 | lp->bfp_pivotcount = (BFPint_lp *) | ^ lp_lib.c:5251:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5251 | lp->bfp_refactcount = (BFPint_lpint *) | ^ lp_lib.c:5253:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5253 | lp->bfp_isSetI = (BFPbool_lp *) | ^ lp_lib.c:5255:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5255 | lp->bfp_findredundant = (BFPint_lpintrealcbintint *) | ^ lp_lib.c: In function ‘set_XLI’: lp_lib.c:5447:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5447 | lp->xli_compatible = (XLIbool_lpintintint *) | ^ lp_lib.c:5453:40: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5453 | lp->xli_name = (XLIchar *) | ^ lp_lib.c:5455:40: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5455 | lp->xli_readmodel = (XLIbool_lpcharcharcharint *) | ^ lp_lib.c:5457:40: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5457 | lp->xli_writemodel = (XLIbool_lpcharcharbool *) | ^ lp_lib.c: In function ‘set_outputfile’: lp_lib.c:201:5: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 201 | set_outputstream(lp, output); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ lp_lib.c:197:11: note: ‘output’ was declared here 197 | FILE *output; /* = stdout; */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_matrix.c -o lp_matrix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_mipbb.c -o lp_mipbb.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_params.c -o lp_params.o lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] 266 | { | ^ lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_presolve.c -o lp_presolve.o lp_presolve.c: In function ‘presolve_debugmap’: lp_presolve.c:486:51: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 486 | int colnr, ix, ie, nx, jx, je, *cols, *rows, n; | ^ lp_presolve.c: In function ‘presolve_colfixdual’: lp_presolve.c:2016:18: warning: variable ‘isMI’ set but not used [-Wunused-but-set-variable] 2016 | MYBOOL hasOF, isMI, isDualFREE = TRUE; | ^~~~ lp_presolve.c: In function ‘presolve_coldominance01’: lp_presolve.c:3849:34: warning: variable ‘je’ set but not used [-Wunused-but-set-variable] 3849 | int i, ii, ib, ie, n, jb, je, jx, jj, item, item2, | ^~ lp_presolve.c: In function ‘presolve_columns’: lp_presolve.c:4622:46: warning: variable ‘item’ set but not used [-Wunused-but-set-variable] 4622 | status = RUNNING, ix, j, countNZ, item; | ^~~~ lp_presolve.c:4615:31: warning: variable ‘unbounded’ set but not used [-Wunused-but-set-variable] 4615 | MYBOOL candelete, isOFNZ, unbounded, | ^~~~~~~~~ lp_presolve.c: In function ‘presolve_rows’: lp_presolve.c:5060:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 5060 | if(!presolve_fixSOS1(psdata, j, Value1, &iConRemove, &iVarFixed)) | ^~ lp_presolve.c:5062:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 5062 | psdata->forceupdate = TRUE; | ^~~~~~ In file included from /usr/include/stdio.h:906, from commonlib.h:5, from lp_presolve.c:36: In function ‘fprintf’, inlined from ‘presolve_debugdump’ at lp_presolve.c:3585:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ lp_presolve.c: In function ‘presolve_debugdump’: lp_presolve.c:3558:11: note: ‘output’ was declared here 3558 | FILE *output; /* = stdout; */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_price.c -o lp_price.o lp_price.c: In function ‘compareImprovementVar’: lp_price.c:49:7: warning: variable ‘candidatecolno’ set but not used [-Wunused-but-set-variable] 49 | candidatecolno, candidatevarno = candidate->varno; | ^~~~~~~~~~~~~~ lp_price.c:48:7: warning: variable ‘currentcolno’ set but not used [-Wunused-but-set-variable] 48 | int currentcolno, currentvarno = current->varno, | ^~~~~~~~~~~~ lp_price.c: In function ‘compareSubstitutionVar’: lp_price.c:162:10: warning: variable ‘candidatecolno’ set but not used [-Wunused-but-set-variable] 162 | candidatecolno, candidatevarno = candidate->varno; | ^~~~~~~~~~~~~~ lp_price.c:161:10: warning: variable ‘currentcolno’ set but not used [-Wunused-but-set-variable] 161 | int currentcolno, currentvarno = current->varno, | ^~~~~~~~~~~~ lp_price.c: In function ‘partial_findBlocks’: lp_price.c:1560:15: warning: variable ‘blockdata’ set but not used [-Wunused-but-set-variable] 1560 | partialrec *blockdata; | ^~~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_pricePSE.c -o lp_pricePSE.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_report.c -o lp_report.o In file included from /usr/include/stdio.h:906, from lp_report.c:19: In function ‘fprintf’, inlined from ‘REPORT_debugdump’ at lp_report.c:308:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ lp_report.c: In function ‘REPORT_debugdump’: lp_report.c:299:11: note: ‘output’ was declared here 299 | FILE *output; | ^~~~~~ lp_report.c: In function ‘REPORT_mat_mmsave’: lp_report.c:758:3: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 758 | mm_write_mtx_crd_size(output, n+kk, m, nz+(colndx == lp->var_basic ? 1 : 0)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lp_report.c:709:16: note: ‘output’ was declared here 709 | FILE *output; /* = stdout; */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_rlp.c -o lp_rlp.o In file included from lp_rlp.c:97: lp_rlp.h:1871:14: warning: ‘lp_yy_flex_realloc’ defined but not used [-Wunused-function] 1871 | static void *lp_yy_flex_realloc( void *ptr, lp_yy_size_t size ) | ^~~~~~~~~~~~~~~~~~ lp_rlp.h:1845:12: warning: ‘lp_yy_flex_strlen’ defined but not used [-Wunused-function] 1845 | static int lp_yy_flex_strlen( lp_yyconst char *s ) | ^~~~~~~~~~~~~~~~~ lp_rlp.h:1797:13: warning: ‘lp_yy_fatal_error’ defined but not used [-Wunused-function] 1797 | static void lp_yy_fatal_error( lp_yyconst char msg[] ) | ^~~~~~~~~~~~~~~~~ lp_rlp.h:1353:13: warning: ‘lp_yyunput’ defined but not used [-Wunused-function] 1353 | static void lp_yyunput( int c, register char *lp_yy_bp ) | ^~~~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_scale.c -o lp_scale.o lp_scale.c: In function ‘CurtisReidScales’: lp_scale.c:150:24: warning: variable ‘ekm2’ set but not used [-Wunused-but-set-variable] 150 | qkm2, qkqkm1, ekm2, ekekm1, | ^~~~ lp_scale.c:150:10: warning: variable ‘qkm2’ set but not used [-Wunused-but-set-variable] 150 | qkm2, qkqkm1, ekm2, ekekm1, | ^~~~ lp_scale.c: In function ‘scale_columns’: lp_scale.c:632:16: warning: variable ‘colMax’ set but not used [-Wunused-but-set-variable] 632 | int i,j, colMax, nz; | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_simplex.c -o lp_simplex.o lp_simplex.c: In function ‘dualloop’: lp_simplex.c:983:10: warning: variable ‘epsvalue’ set but not used [-Wunused-but-set-variable] 983 | REAL epsvalue, xviolated, cviolated, | ^~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_utils.c -o lp_utils.o lp_utils.c: In function ‘searchFor’: lp_utils.c:547:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 547 | if(absolute) | ^~ lp_utils.c:549:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 549 | while((beginPos < endPos) && (match != target)) { | ^~~~~ lp_utils.c: In function ‘compareLink’: lp_utils.c:948:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 948 | if(test == 0) | ^~ lp_utils.c:950:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 950 | if(test == 0) | ^~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_wlp.c -o lp_wlp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lpslink56.c -o lpslink56.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lusol.c -o lusol.o In file included from lusol.c:748: lusol1.h: In function ‘LU1FAC’: lusol1.h:3359:34: warning: variable ‘TSP’ set but not used [-Wunused-but-set-variable] 3359 | MYBOOL KEEPLU, TCP, TPP, TRP, TSP; | ^~~ lusol1.h:3359:29: warning: variable ‘TRP’ set but not used [-Wunused-but-set-variable] 3359 | MYBOOL KEEPLU, TCP, TPP, TRP, TSP; | ^~~ lusol1.h:3359:19: warning: variable ‘TCP’ set but not used [-Wunused-but-set-variable] 3359 | MYBOOL KEEPLU, TCP, TPP, TRP, TSP; | ^~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lusolio.c -o lusolio.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mmio.c -o mmio.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c myblas.c -o myblas.o myblas.c: In function ‘load_BLAS’: myblas.c:100:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 100 | BLAS_dscal = (BLAS_dscal_func *) my_GetProcAddress(hBLAS, BLAS_prec "scal"); | ^ myblas.c:101:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 101 | BLAS_dcopy = (BLAS_dcopy_func *) my_GetProcAddress(hBLAS, BLAS_prec "copy"); | ^ myblas.c:102:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 102 | BLAS_daxpy = (BLAS_daxpy_func *) my_GetProcAddress(hBLAS, BLAS_prec "axpy"); | ^ myblas.c:103:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 103 | BLAS_dswap = (BLAS_dswap_func *) my_GetProcAddress(hBLAS, BLAS_prec "swap"); | ^ myblas.c:104:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 104 | BLAS_ddot = (BLAS_ddot_func *) my_GetProcAddress(hBLAS, BLAS_prec "dot"); | ^ myblas.c:105:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 105 | BLAS_idamax = (BLAS_idamax_func *) my_GetProcAddress(hBLAS, "i" BLAS_prec "amax"); | ^ myblas.c:106:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 106 | BLAS_idamin = (BLAS_idamin_func *) my_GetProcAddress(hBLAS, "i" BLAS_prec "amin"); | ^ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparselib.c -o sparselib.o sparselib.c: In function ‘dswapVector1’: sparselib.c:823:10: warning: variable ‘d’ set but not used [-Wunused-but-set-variable] 823 | int i, d, n; | ^ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yacc_read.c -o yacc_read.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o lpSolve.so colamd.o commonlib.o hbio.o ini.o init.o isfixedvar.o lp_Hash.o lp_LUSOL.o lp_MDO.o lp_MPS.o lp_SOS.o lp_crash.o lp_lib.o lp_matrix.o lp_mipbb.o lp_params.o lp_presolve.o lp_price.o lp_pricePSE.o lp_report.o lp_rlp.o lp_scale.o lp_simplex.o lp_utils.o lp_wlp.o lpslink56.o lusol.o lusolio.o mmio.o myblas.o sparselib.o yacc_read.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/lpSolve/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/lpSolve/libs Compiling ps using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/ps/src' gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 -Wall px.c -o px gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api-common.c -o api-common.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extra.c -o extra.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dummy.c -o dummy.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c error-codes.c -o error-codes.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c posix.c -o posix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api-posix.c -o api-posix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linux.c -o linux.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api-linux.c -o api-linux.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/ps/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/ps Compiling zip using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/zip/src' gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c miniz.c -o miniz.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rzip.c -o rzip.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zip.c -o zip.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unixutils.c -o unixutils.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/zip/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/zip Compiling processx using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/processx/src' gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 -Wall tools/px.c -o tools/px gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 -I../inst/include -Wall tools/sock.c -o tools/sock gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 supervisor/supervisor.c \ supervisor/utils.c -o supervisor/supervisor gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c client.c -o client.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-13 -shared -L"/home/hornik/tmp/R-d-gcc-13/lib" -Wl,-O1 -o client.so base64.o client.o errors.o \ -L"/home/hornik/tmp/R-d-gcc-13/lib" -lR if [ -n "" ]; then \ echo Removing libR.so dependency from client.so; \ patchelf --remove-needed libR.so client.so; \ fi gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c poll.c -o poll.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c processx-connection.c -o processx-connection.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c processx-vector.c -o processx-vector.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c create-time.c -o create-time.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/childlist.c -o unix/childlist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/connection.c -o unix/connection.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/processx.c -o unix/processx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/sigchld.c -o unix/sigchld.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/utils.c -o unix/utils.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/named_pipe.c -o unix/named_pipe.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/processx/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/processx Compiling callr Compiling desc Compiling pkgbuild Compiling pkgcache using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/pkgcache/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lib.c -o lib.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winfiles.c -o winfiles.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o pkgcache.so errors.o init.o lib.o winfiles.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src/library/pkgcache/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/pkgcache/libs Compiling pkgsearch Compiling pkgdepends make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjblRpU/R.INSTALL2b95576a91706/pak/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pak) * installing *source* package ‘findR’ ... ** package ‘findR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (findR) checking xfun_0.43.tar.gz ... checking annotator_0.0.3.1.tar.gz ... checking blogdown_1.19.tar.gz ... checking bookdown_0.38.tar.gz ... checking clinDataReview_1.5.0.tar.gz ... checking daiquiri_1.1.1.tar.gz ... checking databraryr_0.6.2.tar.gz ... checking distill_1.6.tar.gz ... checking emayili_0.7.18.tar.gz ... checking fabR_2.0.1.tar.gz ... checking ftExtra_0.6.2.tar.gz ... checking gitignore_0.1.6.tar.gz ... checking highr_0.10.tar.gz ... checking juicedown_0.1.1.tar.gz ... checking knitr_1.45.tar.gz ... checking knitrdata_0.6.1.tar.gz ... checking leaflet_2.2.1.tar.gz ... checking link2GI_0.5-3.tar.gz ... checking markdown_1.12.tar.gz ... checking MDMAPR_0.2.3.tar.gz ... checking minidown_0.4.0.tar.gz ... checking NMsim_0.1.0.tar.gz ... checking pagedown_0.20.tar.gz ... checking personalr_1.0.3.tar.gz ... checking pmxcode_0.1.2.tar.gz ... checking qwraps2_0.6.0.tar.gz ... checking rcompendium_1.3.tar.gz ... checking Rd2roxygen_1.15.tar.gz ... checking islasso_1.5.2.tar.gz ... checking tufte_0.13.tar.gz ... checking pathwayTMB_0.1.3.tar.gz ... checking hdcate_0.1.0.tar.gz ... checking tinytex_0.50.tar.gz ... checking rjtools_1.0.12.tar.gz ... checking curephEM_0.3.0.tar.gz ... checking rmarkdown_2.26.tar.gz ... checking vitae_0.5.4.tar.gz ... checking FGLMtrunc_0.1.0.tar.gz ... checking worcs_0.1.14.tar.gz ... checking glmnet_4.1-8.tar.gz ... checking sendigR_1.0.0.tar.gz ... checking rtemps_0.8.0.tar.gz ... checking servr_0.30.tar.gz ... checking multiview_0.8.tar.gz ... checking Statamarkdown_0.9.2.tar.gz ... checking xaringan_0.30.tar.gz ... checking rebib_0.3.2.tar.gz ... checking quarto_1.4.tar.gz ... checking texor_1.3.0.tar.gz ... checking ddtlcm_0.1.1.tar.gz ... checking mfp2_1.0.0.tar.gz ... checking polished_0.8.1.tar.gz ... checking campsismod_1.1.1.tar.gz ... checking scientific_2024.1.tar.gz ... checking voiceR_0.1.0.tar.gz ... checking webexercises_1.1.0.tar.gz ... checking public.ctn0094data_1.0.6.tar.gz ... checking plasso_0.1.2.tar.gz ... checking socialranking_1.1.0.tar.gz ... checking rticles_0.26.tar.gz ... checking mimsy_0.6.4.tar.gz ... checking RWsearch_5.1.4.tar.gz ... checking SASmarkdown_0.8.2.tar.gz ... checking shinymeta_0.2.0.3.tar.gz ... Depends: Package: xfun Imports: grDevices, stats, tools Timings: user system elapsed xfun 58.066 5.464 69.272 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 7 56 Check results summary: xfun ... OK rdepends_annotator ... OK rdepends_blogdown ... OK rdepends_bookdown ... OK rdepends_campsismod ... OK rdepends_clinDataReview ... OK rdepends_curephEM ... OK rdepends_daiquiri ... OK rdepends_databraryr ... OK rdepends_ddtlcm ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_distill ... OK rdepends_emayili ... OK rdepends_fabR ... OK rdepends_FGLMtrunc ... NOTE * checking C++ specification ... NOTE rdepends_ftExtra ... OK rdepends_gitignore ... OK rdepends_glmnet ... OK rdepends_hdcate ... OK rdepends_highr ... OK rdepends_islasso ... OK rdepends_juicedown ... OK rdepends_knitr ... OK rdepends_knitrdata ... NOTE * checking LazyData ... NOTE rdepends_leaflet ... OK rdepends_link2GI ... OK rdepends_markdown ... OK rdepends_MDMAPR ... OK rdepends_mfp2 ... OK rdepends_mimsy ... OK rdepends_minidown ... OK rdepends_multiview ... OK rdepends_NMsim ... OK rdepends_pagedown ... OK rdepends_pathwayTMB ... OK rdepends_personalr ... OK rdepends_plasso ... OK rdepends_pmxcode ... OK rdepends_polished ... OK rdepends_public.ctn0094data ... OK rdepends_quarto ... OK rdepends_qwraps2 ... NOTE * checking HTML version of manual ... [1s/2s] NOTE rdepends_rcompendium ... OK rdepends_Rd2roxygen ... OK rdepends_rebib ... OK rdepends_rjtools ... OK rdepends_rmarkdown ... OK rdepends_rtemps ... NOTE * checking LazyData ... NOTE rdepends_rticles ... NOTE * checking for GNU extensions in Makefiles ... NOTE rdepends_RWsearch ... OK rdepends_SASmarkdown ... OK rdepends_scientific ... OK rdepends_sendigR ... OK rdepends_servr ... OK rdepends_shinymeta ... OK rdepends_socialranking ... OK rdepends_Statamarkdown ... OK rdepends_texor ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_tinytex ... OK rdepends_tufte ... OK rdepends_vitae ... OK rdepends_voiceR ... OK rdepends_webexercises ... OK rdepends_worcs ... OK rdepends_xaringan ... OK