* using log directory ‘/home/hornik/tmp/CRAN_recheck/wrProteo.Rcheck’
* using R Under development (unstable) (2024-11-15 r87338)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-1) 14.2.0
    GNU Fortran (Debian 14.2.0-1) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘wrProteo/DESCRIPTION’ ... OK
* this is package ‘wrProteo’ version ‘1.13.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [8s/14s] NOTE
Maintainer: ‘Wolfgang Raffelsberger <w.raffelsberger@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://www.igbmc.fr
    From: inst/doc/wrProteoVignette1.html
          inst/doc/wrProteoVignetteUPS1.html
    Status: Error
    Message: server verification failed: certificate has expired. (CAfile: /etc/ssl/certs/ca-certificates.crt CRLfile: none)
  URL: https://www.igbmc.fr/en/plateformes-technologiques/translate-to-english-proteomique
    From: inst/doc/wrProteoVignette1.html
          inst/doc/wrProteoVignetteUPS1.html
    Status: Error
    Message: server verification failed: certificate has expired. (CAfile: /etc/ssl/certs/ca-certificates.crt CRLfile: none)
  URL: https://www.sigmaaldrich.com
    From: man/getUPS1acc.Rd
    Status: Error
    Message: HTTP/2 stream 3 was not closed cleanly: INTERNAL_ERROR (err 2)
  URL: https://www.sigmaaldrich.com/GB/en
    From: inst/doc/wrProteoVignetteUPS1.html
    Status: Error
    Message: HTTP/2 stream 5 was not closed cleanly: INTERNAL_ERROR (err 2)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘wrProteo’ can be installed ... [11s/11s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s/26s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [112s/115s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE