Package: wrGraph
Check: examples
New result: ERROR
  Running examples in ‘wrGraph-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: VolcanoPlotW
  > ### Title: Volcano-Plot (Statistical Test Outcome versus Relative Change)
  > ### Aliases: VolcanoPlotW
  > 
  > ### ** Examples
  > 
  > library(wrMisc)
  > set.seed(2005); mat <- matrix(round(runif(900),2), ncol=9)
  > rownames(mat) <- paste0(rep(letters[1:25], each=4), rep(letters[2:26],4))
  > mat[1:50,4:6] <- mat[1:50,4:6] + rep(c(-1,1)*0.1,25)
  > mat[3:7,4:9] <- mat[3:7,4:9] + 0.7
  > mat[11:15,1:6] <- mat[11:15,1:6] - 0.7
  > ## assume 2 groups with 3 samples each
  > gr3 <- gl(3, 3, labels=c("C","A","B"))
  > tRes2 <- moderTest2grp(mat[,1:6], gl(2,3), addResults = c("FDR","means"))
  > # Note: due to the small number of lines only FDR chosen to calculate
  > VolcanoPlotW(tRes2)
  VolcanoPlotW : Argument 'filtFin' seems invalid (should be logical vector of length of number of elements for plotting )
  > ## Add names of points passing custom filters
  > VolcanoPlotW(tRes2, FCth=1.3, FdrThrs=0.2, namesNBest="passThr")
  VolcanoPlotW : Argument 'filtFin' seems invalid (should be logical vector of length of number of elements for plotting )
  > 
  > ## assume 3 groups with 3 samples each
  > tRes <- moderTestXgrp(mat, gr3, addResults = c("FDR","means"))
  > # Note: due to the small number of lines only FDR chosen to calculate
  > VolcanoPlotW(tRes)
  Warning in matrix(grp[pwGrInd], ncol = length(grp)) :
    data length [2] is not a sub-multiple or multiple of the number of columns [3]
  Error in grpMeans[, useCompNa2[2]] : subscript out of bounds
  Calls: VolcanoPlotW
  Execution halted

Package: wrGraph
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘wrGraphVignette1.Rmd’ using rmarkdown
  
  Quitting from wrGraphVignette1.Rmd:499-506 [Volc2]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error in `grpMeans[, useCompNa2[2]]`:
  ! subscript out of bounds
  ---
  Backtrace:
      ▆
   1. └─wrGraph::VolcanoPlotW(tRes, FCth = 1.3, FdrThrs = 0.2, useComp = 2)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Error: processing vignette 'wrGraphVignette1.Rmd' failed with diagnostics:
  subscript out of bounds
  --- failed re-building ‘wrGraphVignette1.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘wrGraphVignette1.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted