Package: wrProteo
Check: examples
New result: ERROR
  Running examples in ‘wrProteo-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: fuseProteomicsProjects
  > ### Title: Combine Multiple Proteomics Data-Sets
  > ### Aliases: fuseProteomicsProjects
  > 
  > ### ** Examples
  > 
  > path1 <- system.file("extdata", package="wrProteo")
  > dataMQ <- readMaxQuantFile(path1, specPref=NULL, normalizeMeth="median")
  Warning in file(file, "rt") :
    cannot open file 'NA': No such file or directory
  Warning in readMaxQuantFile(path1, specPref = NULL, normalizeMeth = "median") :
    Unable to read input file ('NA')!  (check format or if rights to read)
  > MCproFi1 <- "tinyMC.RData"
  > dataMC <- readMassChroQFile(path1, file=MCproFi1, plotGraph=FALSE)
  readMassChroQFile : Loading R-object 'tinyMC' as quantification data out of /home/hornik/tmp/CRAN_recheck/wrProteo.Rcheck/wrProteo/extdata/tinyMC.RData
  > dataFused <- fuseProteomicsProjects(dataMQ, dataMC)
  Error in fuseProteomicsProjects(dataMQ, dataMC) : 
    Argument 'x' seems empty !
  Execution halted

Package: wrProteo
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘wrProteoVignette1.Rmd’ using rmarkdown
  ** Processing: /home/hornik/tmp/CRAN_recheck/wrProteo.Rcheck/vign_test/wrProteo/vignettes/wrProteoVignette1_files/figure-html/readMaxQuantPeptides-1.png
  1344x960 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 192875 bytes
  Input file size = 193229 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 164445
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 164445
  
  Output IDAT size = 164445 bytes (28430 bytes decrease)
  Output file size = 164523 bytes (28706 bytes = 14.86% decrease)
  
  
  Quitting from lines 485-489 [readIonbot1] (wrProteoVignette1.Rmd)
  Error: processing vignette 'wrProteoVignette1.Rmd' failed with diagnostics:
  Unable to read input file ('NA')!
  --- failed re-building ‘wrProteoVignette1.Rmd’
  
  --- re-building ‘wrProteoVignetteUPS1.Rmd’ using rmarkdown
  
  Quitting from lines 378-391 [rearrange1] (wrProteoVignetteUPS1.Rmd)
  Error: processing vignette 'wrProteoVignetteUPS1.Rmd' failed with diagnostics:
  argument 1 is not a vector
  --- failed re-building ‘wrProteoVignetteUPS1.Rmd’
  
  SUMMARY: processing the following files failed:
    ‘wrProteoVignette1.Rmd’ ‘wrProteoVignetteUPS1.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted