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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(wingen) > > test_check("wingen") Loading required package: sp Loading required namespace: vcfR Loading required namespace: adegenet [using ordinary kriging] [using ordinary kriging] [using ordinary kriging] [using ordinary kriging] Scanning file to determine attributes. File attributes: meta lines: 3 header_line: 4 variant count: 10 column count: 19 Meta line 3 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 10 Character matrix gt cols: 19 skip: 0 nrows: 10 row_num: 0 Processed variant: 10 All variants processed Scanning file to determine attributes. File attributes: meta lines: 3 header_line: 4 variant count: 10 column count: 19 Meta line 3 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 10 Character matrix gt cols: 19 skip: 0 nrows: 10 row_num: 0 Processed variant: 10 All variants processed Input raster has multiple layers. Using only the first layer. [using ordinary kriging] Input raster has multiple layers. Using only the first layer. [using ordinary kriging] Progress: ───────────────────────────────── 100% Progress: ──────────────────────────────────────── 100% Progress: ─────────────────────────────────────────────────── 100% Progress: ─────────────────────────────────────────────────── 100% Progress: ────────────────────────────────────────────────────────── 100% Progress: ───────────────────────────────────────────────────── 100% Progress: ──────────────────────────────────────────────── 100% Progress: ────────────────────────────────────────────────────────────── 100% Progress: ───────────────────────────────────────────── 100% Progress: ───────────────────────────────────────────────────────── 100% Progress: ────────────────────────────────────────── 100% Progress: ─────────────────────────────────────────────────── 100% Progress: ────────────── 100% Progress: ──────────────── 100% Progress: ────────────────────────── 100% Progress: ──────────────────────────── 100% Progress: ───────────────────────────────── 100% Progress: ─────────────────────────────────────── 100% Progress: ───────────────────────────────────────────────────── 100% Progress: ────────────────────────────────────────────────────── 100% Progress: ──────────────────────────────────────────────────────── 100% Progress: ──────────────────────────────────────────────────────── 100% Progress: ───────────────────────────────── 100% Progress: ──────────────────────────────────────── 100% Progress: ───────────────────────────────────────────────── 100% Progress: ─────────────────────────────────────────────────── 100% Progress: ─────────────────────────────────────────────────── 100% Progress: ─────────────────────────────────────────────────── 100% Progress: ────────────────────────────────────────────────────────── 100% Progress: ──────────────────────────────────────────── 100% Progress: ──────────────────────────────────────────────────────── 100% -------------------- mini middle earth example -------------------- Objects loaded: mini_vcf: vcfR object (10 variants x 10 samples) and no missing data mini_vcf_NA: vcfR object (10 variants x 10 samples) and missing data mini_coords: dataframe with x and y coordinates mini_lyr: middle earth RasterLayer (10 x 10) ------------------------------------------------------------------- -------------------- mini middle earth example -------------------- Objects loaded: mini_vcf: vcfR object (10 variants x 10 samples) and no missing data mini_vcf_NA: vcfR object (10 variants x 10 samples) and missing data mini_coords: dataframe with x and y coordinates mini_lyr: middle earth RasterLayer (10 x 10) ------------------------------------------------------------------- -------------------- mini middle earth example -------------------- Objects loaded: mini_vcf: vcfR object (10 variants x 10 samples) and no missing data mini_vcf_NA: vcfR object (10 variants x 10 samples) and missing data mini_coords: dataframe with x and y coordinates mini_lyr: middle earth RasterLayer (10 x 10) ------------------------------------------------------------------- -------------------- mini middle earth example -------------------- Objects loaded: mini_vcf: vcfR object (10 variants x 10 samples) and no missing data mini_vcf_NA: vcfR object (10 variants x 10 samples) and missing data mini_coords: dataframe with x and y coordinates mini_lyr: middle earth RasterLayer (10 x 10) ------------------------------------------------------------------- Scanning file to determine attributes. File attributes: meta lines: 3 header_line: 4 variant count: 10 column count: 19 Meta line 3 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 10 Character matrix gt cols: 19 skip: 0 nrows: 10 row_num: 0 Processed variant: 10 All variants processed [using ordinary kriging] [using ordinary kriging] [using ordinary kriging] [using ordinary kriging] [using ordinary kriging] [using ordinary kriging] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 209 ] > > proc.time() user system elapsed 155.45 6.37 195.34