* using log directory 'd:/RCompile/CRANincoming/R-devel/windex.Rcheck'
* using R Under development (unstable) (2025-02-04 r87685 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'windex/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'windex' version '2.1.0'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Kevin Arbuckle <kevin.arbuckle@swansea.ac.uk>'

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Arbuckle",
                      role = c("aut", "cre"),
                      email = "kevin.arbuckle@swansea.ac.uk"),
               person(given = "Amanda",
                      family = "Minter",
                      role = "aut"))
as necessary.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'windex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
barplot.logreg: no visible global function definition for 'barplot'
Undefined global functions or variables:
  barplot
Consider adding
  importFrom("graphics", "barplot")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  richYuleInputs.Rd: richness.yule.test
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Bad \usage lines found in Rd file 'barplot.logreg.Rd':
  barplot.logreg<-function(mod,parIndex=2,yName="response",
  xLevels=paste(c(1:length(c(1,parIndex)))),main="",...)

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in 'windex-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: barplot.logreg
> ### Title: Plots a barplot from logistic regression parameter estimates
> ### Aliases: barplot.logreg
> 
> ### ** Examples
> 
> bitten<-sample(c(0,1),100,replace=T,prob=c(0.4,0.6))
Error in sample.int(length(x), size, replace, prob) : 
  T used instead of TRUE
Calls: sample -> sample.int
Execution halted
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 3 NOTEs