* using log directory ‘/srv/hornik/tmp/CRAN_pretest/wgsLR.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (3+b1)
    Debian flang version 21.1.8 (3+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-03-06 20:47:05 UTC
* checking for file ‘wgsLR/DESCRIPTION’ ... OK
* this is package ‘wgsLR’ version ‘0.0.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Mikkel Meyer Andersen <mikl@math.aau.dk>’

New submission

Found the following (possibly) invalid URLs:
  URL: https://doi.org/10.1016/j.fsigen.2026.103474
    From: inst/CITATION
          README.md
    Status: 404
    Message: Not Found
  URL: https://mikldk.github.io/wgsLR (moved to https://mikldk.github.io/wgsLR/)
    From: README.md
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

Found the following (possibly) invalid DOIs:
  DOI: 10.1016/j.fsigen.2026.103474
    From: inst/CITATION
    Status: 404
    Message: Not Found

The Title field should be in title case. Current version is:
  ‘Whole-genome sequencing genotype error estimation and forensic likelihood ratios accounting for errors’
In title case that is:
  ‘Whole-Genome Sequencing Genotype Error Estimation and Forensic Likelihood Ratios Accounting for Errors’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘wgsLR’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/7s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [8s/8s] OK
  Running ‘testthat.R’ [8s/8s]
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  ‘caracas’ ‘cmdstanr’
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [4s/4s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs