* using log directory 'd:/RCompile/CRANincoming/R-devel/warbleR.Rcheck' * using R Under development (unstable) (2023-08-30 r85030 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'warbleR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'warbleR' version '1.1.29' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [12s] NOTE Maintainer: 'Marcelo Araya-Salas ' Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following (possibly) invalid URLs: URL: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12624 From: README.md Status: 403 Message: Forbidden URL: https://marce10.github.io/2016/09/12/Similarity_of_acoustic_signals_with_dynamic_time_warping_(DTW).html From: man/freq_DTW.Rd man/multi_DTW.Rd inst/doc/warbleR_workflow_03.html Status: 404 Message: Not Found URL: https://marce10.github.io/2016/12/22/Download_a_single_recording_for_each_species_in_a_site_from_Xeno-Canto.html From: man/query_xc.Rd Status: 404 Message: Not Found URL: https://marce10.github.io/2017/01/07/Create_pdf_files_with_spectrograms_of_full_recordings.html From: man/full_spectrogram2pdf.Rd man/full_spectrograms.Rd Status: 404 Message: Not Found URL: https://marce10.github.io/2017/02/17/Choosing_the_right_method_for_measuring_acoustic_signal_structure.html From: man/compare_methods.Rd inst/doc/warbleR_workflow_03.html Status: 404 Message: Not Found URL: https://marce10.github.io/2017/03/17/Creating_song_catalogs.html From: man/catalog.Rd man/catalog2pdf.Rd man/tweak_spectro.Rd inst/doc/warbleR_workflow_02.html Status: 404 Message: Not Found URL: https://marce10.github.io/2017/06/06/Individual_sound_files_for_each_selection.html From: man/cut_sels.Rd Status: 404 Message: Not Found URL: https://marce10.github.io/2017/07/31/Updates_on_catalog_function.html From: man/catalog.Rd man/tweak_spectro.Rd inst/doc/warbleR_workflow_02.html Status: 404 Message: Not Found URL: https://marce10.github.io/2018/05/15/Extended_selection_tables.html From: man/selection_table.Rd Status: 404 Message: Not Found URL: https://marce10.github.io/warbleR/reference/harmonic_track.html From: inst/doc/Intro_to_warbleR.html Status: 404 Message: Not Found URL: https://marce10.github.io/warbleR/reference/optimize_auto_detec.html From: inst/doc/Intro_to_warbleR.html Status: 404 Message: Not Found URL: https://marce10.github.io/warbleR/reference/track_freqs.html From: inst/doc/Intro_to_warbleR.html Status: 404 Message: Not Found Found the following (possibly) invalid file URIs: URI: commits/develop From: README.md URI: /commits/master From: README.md GNU make is a SystemRequirements. Size of tarball: 5213062 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: ..pdf These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. CRAN-pack does not know about ..pdf * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'warbleR' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 12.2.0' * checking C++ specification ... NOTE Specified C++11: please drop specification unless essential * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [37s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [33s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [78s] OK Running 'testthat.R' [78s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [13s] OK * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... [20s] OK * DONE Status: 3 NOTEs