* using log directory ‘/srv/hornik/tmp/CRAN/wallace.Rcheck’ * using R Under development (unstable) (2023-10-17 r85341) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (15) GNU Fortran (Debian 13.2.0-4) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘wallace/DESCRIPTION’ ... OK * this is package ‘wallace’ version ‘2.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/6s] WARNING Maintainer: ‘Gonzalo E. Pinilla-Buitrago ’ New submission Package was archived on CRAN Insufficient package version (submitted: 2.1.0, existing: 2.1.0) CRAN repository db overrides: X-CRAN-Comment: Archived on 2023-10-16 as requires archived package 'rangeModelMetadata'. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘wallace’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [4s/4s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [73s/155s] ERROR Running ‘testthat.R’ [73s/154s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > Sys.setenv("R_TEST" = "") > library(testthat) > library(wallace) Loading required package: shiny Loading required package: leaflet > > test_check("wallace") trying URL 'https://www.dropbox.com/sh/kijh17ehg8v3uv8/AADWJOs0_8zQmhc0XJxJE9a2a/bio%20%23baseline_Modern%281950-1999%29%23%20CCSM_LGM%2821ka%29.txt?dl=1' Content type 'application/binary' length 86163749 bytes (82.2 MB) ==== downloaded 7.0 MB trying URL 'https://biogeo.ucdavis.edu/data/climate/worldclim/1_4/grid/cur/bio_10m_bil.zip' Content type 'application/zip' length 10735619 bytes (10.2 MB) ================================================== downloaded 10.2 MB | | | 0% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Reading layer `Bassaricyon_neblina' from data source `/srv/hornik/tmp/CRAN/wallace.Rcheck/wallace/extdata/shp/Bassaricyon_neblina.shp' using driver `ESRI Shapefile' Simple feature collection with 1 feature and 1 field Geometry type: POLYGON Dimension: XY Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333 CRS: NA Reading layer `Bassaricyon_neblina' from data source `/srv/hornik/tmp/CRAN/wallace.Rcheck/wallace/extdata/shp/Bassaricyon_neblina.shp' using driver `ESRI Shapefile' Simple feature collection with 1 feature and 1 field Geometry type: POLYGON Dimension: XY Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333 CRS: NA Reading layer `Bassaricyon_neblina' from data source `/srv/hornik/tmp/CRAN/wallace.Rcheck/wallace/extdata/shp/Bassaricyon_neblina.shp' using driver `ESRI Shapefile' Simple feature collection with 1 feature and 1 field Geometry type: POLYGON Dimension: XY Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333 CRS: NA | | | 0% Reading layer `Bassaricyon_neblina' from data source `/srv/hornik/tmp/CRAN/wallace.Rcheck/wallace/extdata/shp/Bassaricyon_neblina.shp' using driver `ESRI Shapefile' Simple feature collection with 1 feature and 1 field Geometry type: POLYGON Dimension: XY Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333 CRS: NA Reading layer `Bassaricyon_neblina' from data source `/srv/hornik/tmp/CRAN/wallace.Rcheck/wallace/extdata/shp/Bassaricyon_neblina.shp' using driver `ESRI Shapefile' Simple feature collection with 1 feature and 1 field Geometry type: POLYGON Dimension: XY Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333 CRS: NA Reading layer `Bassaricyon_neblina' from data source `/srv/hornik/tmp/CRAN/wallace.Rcheck/wallace/extdata/shp/Bassaricyon_neblina.shp' using driver `ESRI Shapefile' Simple feature collection with 1 feature and 1 field Geometry type: POLYGON Dimension: XY Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333 CRS: NA [ FAIL 10 | WARN 22 | SKIP 11 | PASS 264 ] ══ Skipped tests (11) ══════════════════════════════════════════════════════════ • On CRAN (5): 'test_envs_ecoClimate.R:23:3', 'test_envs_ecoClimate.R:46:3', 'test_envs_worldclim.R:27:3', 'test_occs_queryDb.R:85:3', 'test_occs_queryDb.R:85:3' • class(out.vert) == "try-error" is TRUE (6): 'test_occs_queryDb.R:146:5', 'test_occs_queryDb.R:166:5', 'test_occs_queryDb.R:185:5', 'test_occs_queryDb.R:146:5', 'test_occs_queryDb.R:166:5', 'test_occs_queryDb.R:185:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_espace_occDens.R:55:3'): output checks ─────────────────────── TestOccDens[[sp.name1]]$z inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:56:3'): output checks ─────────────────────── TestOccDens[[sp.name1]]$Z inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:57:3'): output checks ─────────────────────── TestOccDens[[sp.name1]]$z.uncor inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:58:3'): output checks ─────────────────────── TestOccDens[[sp.name1]]$z.cor inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:59:3'): output checks ─────────────────────── TestOccDens[[sp.name1]]$w inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:61:3'): output checks ─────────────────────── TestOccDens[[sp.name2]]$z inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:62:3'): output checks ─────────────────────── TestOccDens[[sp.name2]]$Z inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:63:3'): output checks ─────────────────────── TestOccDens[[sp.name2]]$z.uncor inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:64:3'): output checks ─────────────────────── TestOccDens[[sp.name2]]$z.cor inherits from `'SpatRaster'` not `'character'`. ── Failure ('test_espace_occDens.R:65:3'): output checks ─────────────────────── TestOccDens[[sp.name2]]$w inherits from `'SpatRaster'` not `'character'`. [ FAIL 10 | WARN 22 | SKIP 11 | PASS 264 ] Error: Test failures Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING