* using log directory 'd:/RCompile/CRANincoming/R-devel/vsmi.Rcheck'
* using R Under development (unstable) (2024-04-24 r86484 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'vsmi/DESCRIPTION' ... OK
* this is package 'vsmi' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Haoyu Yang <haoyuyang@alu.ruc.edu.cn>'

New submission

Non-FOSS package license (`use_mit_license()`)

The Title field should be in title case. Current version is:
'Variable selection for multiple imputed data'
In title case that is:
'Variable Selection for Multiple Imputed Data'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'vsmi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... WARNING
Non-standard license specification:
  `use_mit_license()`
Standardizable: FALSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  'MASS' 'Matrix'
'library' or 'require' calls in package code:
  'MASS' 'Matrix'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
PEE : logit_QL_gl.alasso.estimate: no visible global function
  definition for 'cor'
PEE : logit_QL_gl.alasso.estimate: no visible binding for global
  variable 'rr'
PEE : Poisson_QL_gl.alasso.estimate: no visible global function
  definition for 'cor'
PEE : Poisson_QL_gl.alasso.estimate: no visible binding for global
  variable 'rr'
PEE: no visible global function definition for 'head'
PEE: no visible binding for global variable 'mi_data'
PEE: no visible binding for global variable 'g1'
PEE: no visible global function definition for 'qif'
PEE: no visible binding for global variable 'binomial'
PEE: no visible binding for global variable 'poisson'
PWLS : GEEsym.estimate: no visible global function definition for 'cor'
PWLS : GEEsym.estimate: no visible binding for global variable 'rr'
PWLS : GEEsym_gl.lasso.estimate: no visible global function definition
  for 'cor'
PWLS : GEEsym_gl.lasso.estimate: no visible binding for global variable
  'rr'
PWLS : GEEsym_gl.alasso.estimate: no visible global function definition
  for 'cor'
PWLS : GEEsym_gl.alasso.estimate: no visible binding for global
  variable 'rr'
PWLS: no visible binding for global variable 'mi_entire'
generate_pee_missing_data: no visible global function definition for
  'mvrnorm'
generate_pee_missing_data: no visible global function definition for
  'rbinom'
generate_pee_missing_data: no visible global function definition for
  'rpois'
generate_pwls_missing_data: no visible global function definition for
  'mvrnorm'
generate_pwls_missing_data: no visible global function definition for
  'rbinom'
generate_pwls_missing_data: no visible global function definition for
  'uniroot'
generate_pwls_missing_data: no visible binding for global variable 'f1'
Undefined global functions or variables:
  binomial cor f1 g1 head mi_data mi_entire mvrnorm poisson qif rbinom
  rpois rr uniroot
Consider adding
  importFrom("stats", "binomial", "cor", "poisson", "rbinom", "rpois",
             "uniroot")
  importFrom("utils", "head")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'PEE.Rd'
  'lamda.vec' 'Gamma'
Documented arguments not in \usage in Rd file 'PEE.Rd':
  'lamba.vec' 'gamma'

Undocumented arguments in Rd file 'PWLS.Rd'
  'lamda.vec' 'Gamma'
Documented arguments not in \usage in Rd file 'PWLS.Rd':
  'lamba.vec' 'gamma'

Documented arguments not in \usage in Rd file 'generate_pee_missing_data.Rd':
  'pt2'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [588s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
       user system elapsed
PWLS 406.56  21.57  428.32
PEE  151.73   7.19  159.20
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 3 WARNINGs, 3 NOTEs