Package: nlmixr2plot
Check: tests
New result: ERROR
    Running ‘testthat.R’ [61s/59s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(nlmixr2plot)
    > 
    > test_check("nlmixr2plot")
    Saving _problems/test-plots-51.R
    Saving _problems/test-plots-52.R
    Saving _problems/test-plots-53.R
    Saving _problems/test-plots-54.R
    Saving _problems/test-plots-57.R
    Saving _problems/test-plots-58.R
    [ FAIL 6 | WARN 19 | SKIP 2 | PASS 31 ]
    
    ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
    • On CRAN (2): 'test-plots-cens.R:2:3', 'test-plots-multiple-endpoints.R:2:3'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test-plots.R:51:3'): test plots with vdiffr ───────────────────────
    Expected `vpcPlot(fit, pred_corr = TRUE)` not to throw any errors.
    Actually got a <rlang_error> with message:
      i In argument: `q5 = quantile(dv, pi[1])`.
      i In group 1: `strat = 1`, `sim = 1`, `bin = 1`.
      Caused by error in `quantile.default()`:
      ! missing values and NaN's not allowed if 'na.rm' is FALSE
    Backtrace:
         ▆
      1. ├─testthat::expect_error(vpcPlot(fit, pred_corr = TRUE), NA) at test-plots.R:51:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. ├─nlmixr2plot::vpcPlot(fit, pred_corr = TRUE)
      8. │ └─vpc::vpc_vpc(...)
      9. │   └─vpc:::calc_vpc_continuous(...)
     10. │     └─sim %>% dplyr::group_by(strat, sim, bin) %>% ...
     11. ├─dplyr::summarise(...)
     12. ├─dplyr:::summarise.grouped_df(...)
     13. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
     14. │   ├─base::withCallingHandlers(...)
     15. │   └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
     16. │     └─base::lapply(.x, .f, ...)
     17. │       └─dplyr (local) FUN(X[[i]], ...)
     18. │         └─mask$eval_all_summarise(quo)
     19. │           └─dplyr (local) eval()
     20. ├─stats::quantile(dv, pi[1])
     21. ├─stats:::quantile.default(dv, pi[1])
     22. │ └─base::stop("missing values and NaN's not allowed if 'na.rm' is FALSE")
     23. └─base::.handleSimpleError(...)
     24.   └─dplyr (local) h(simpleError(msg, call))
     25.     └─dplyr (local) handler(cnd)
     26.       └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    ── Failure ('test-plots.R:52:3'): test plots with vdiffr ───────────────────────
    Expected `vpcPlot(fitSim, pred_corr = TRUE)` not to throw any errors.
    Actually got a <rlang_error> with message:
      i In argument: `q5 = quantile(dv, pi[1])`.
      i In group 1: `strat = 1`, `sim = 1`, `bin = 1`.
      Caused by error in `quantile.default()`:
      ! missing values and NaN's not allowed if 'na.rm' is FALSE
    Backtrace:
         ▆
      1. ├─testthat::expect_error(vpcPlot(fitSim, pred_corr = TRUE), NA) at test-plots.R:52:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. ├─nlmixr2plot::vpcPlot(fitSim, pred_corr = TRUE)
      8. │ └─vpc::vpc_vpc(...)
      9. │   └─vpc:::calc_vpc_continuous(...)
     10. │     └─sim %>% dplyr::group_by(strat, sim, bin) %>% ...
     11. ├─dplyr::summarise(...)
     12. ├─dplyr:::summarise.grouped_df(...)
     13. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
     14. │   ├─base::withCallingHandlers(...)
     15. │   └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
     16. │     └─base::lapply(.x, .f, ...)
     17. │       └─dplyr (local) FUN(X[[i]], ...)
     18. │         └─mask$eval_all_summarise(quo)
     19. │           └─dplyr (local) eval()
     20. ├─stats::quantile(dv, pi[1])
     21. ├─stats:::quantile.default(dv, pi[1])
     22. │ └─base::stop("missing values and NaN's not allowed if 'na.rm' is FALSE")
     23. └─base::.handleSimpleError(...)
     24.   └─dplyr (local) h(simpleError(msg, call))
     25.     └─dplyr (local) handler(cnd)
     26.       └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    ── Failure ('test-plots.R:53:3'): test plots with vdiffr ───────────────────────
    Expected `vpcPlotTad(fit, pred_corr = TRUE)` not to throw any errors.
    Actually got a <rlang_error> with message:
      i In argument: `q5 = quantile(dv, pi[1])`.
      i In group 1: `strat = 1`, `sim = 1`, `bin = 1`.
      Caused by error in `quantile.default()`:
      ! missing values and NaN's not allowed if 'na.rm' is FALSE
    Backtrace:
         ▆
      1. ├─testthat::expect_error(vpcPlotTad(fit, pred_corr = TRUE), NA) at test-plots.R:53:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. ├─nlmixr2plot::vpcPlotTad(fit, pred_corr = TRUE)
      8. │ └─nlmixr2plot::vpcPlot(..., idv = idv)
      9. │   └─vpc::vpc_vpc(...)
     10. │     └─vpc:::calc_vpc_continuous(...)
     11. │       └─sim %>% dplyr::group_by(strat, sim, bin) %>% ...
     12. ├─dplyr::summarise(...)
     13. ├─dplyr:::summarise.grouped_df(...)
     14. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
     15. │   ├─base::withCallingHandlers(...)
     16. │   └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
     17. │     └─base::lapply(.x, .f, ...)
     18. │       └─dplyr (local) FUN(X[[i]], ...)
     19. │         └─mask$eval_all_summarise(quo)
     20. │           └─dplyr (local) eval()
     21. ├─stats::quantile(dv, pi[1])
     22. ├─stats:::quantile.default(dv, pi[1])
     23. │ └─base::stop("missing values and NaN's not allowed if 'na.rm' is FALSE")
     24. └─base::.handleSimpleError(...)
     25.   └─dplyr (local) h(simpleError(msg, call))
     26.     └─dplyr (local) handler(cnd)
     27.       └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    ── Failure ('test-plots.R:54:3'): test plots with vdiffr ───────────────────────
    Expected `vpcPlotTad(fitSim, pred_corr = TRUE)` not to throw any errors.
    Actually got a <rlang_error> with message:
      i In argument: `q5 = quantile(dv, pi[1])`.
      i In group 1: `strat = 1`, `sim = 1`, `bin = 1`.
      Caused by error in `quantile.default()`:
      ! missing values and NaN's not allowed if 'na.rm' is FALSE
    Backtrace:
         ▆
      1. ├─testthat::expect_error(...) at test-plots.R:54:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. ├─nlmixr2plot::vpcPlotTad(fitSim, pred_corr = TRUE)
      8. │ └─nlmixr2plot::vpcPlot(..., idv = idv)
      9. │   └─vpc::vpc_vpc(...)
     10. │     └─vpc:::calc_vpc_continuous(...)
     11. │       └─sim %>% dplyr::group_by(strat, sim, bin) %>% ...
     12. ├─dplyr::summarise(...)
     13. ├─dplyr:::summarise.grouped_df(...)
     14. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
     15. │   ├─base::withCallingHandlers(...)
     16. │   └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
     17. │     └─base::lapply(.x, .f, ...)
     18. │       └─dplyr (local) FUN(X[[i]], ...)
     19. │         └─mask$eval_all_summarise(quo)
     20. │           └─dplyr (local) eval()
     21. ├─stats::quantile(dv, pi[1])
     22. ├─stats:::quantile.default(dv, pi[1])
     23. │ └─base::stop("missing values and NaN's not allowed if 'na.rm' is FALSE")
     24. └─base::.handleSimpleError(...)
     25.   └─dplyr (local) h(simpleError(msg, call))
     26.     └─dplyr (local) handler(cnd)
     27.       └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
    ── Failure ('test-plots.R:57:3'): test plots with vdiffr ───────────────────────
    Expected `vpcCensTad(fit)` not to throw any errors.
    Actually got a <notSubsettableError> with message:
      object of type 'closure' is not subsettable
    Backtrace:
         ▆
      1. ├─testthat::expect_error(vpcCensTad(fit), NA) at test-plots.R:57:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─nlmixr2plot::vpcCensTad(fit)
      8.   └─nlmixr2plot::vpcPlot(..., cens = cens, idv = idv)
      9.     └─vpc::vpc_cens(...)
     10.       └─vpc:::format_vpc_input_data(...)
     11.         └─vpc:::standardize_column(...)
    ── Failure ('test-plots.R:58:3'): test plots with vdiffr ───────────────────────
    Expected `vpcCensTad(fitSim, pred_corr = TRUE)` not to throw any errors.
    Actually got a <notSubsettableError> with message:
      object of type 'closure' is not subsettable
    Backtrace:
         ▆
      1. ├─testthat::expect_error(...) at test-plots.R:58:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─nlmixr2plot::vpcCensTad(fitSim, pred_corr = TRUE)
      8.   └─nlmixr2plot::vpcPlot(..., cens = cens, idv = idv)
      9.     └─vpc::vpc_cens(...)
     10.       └─vpc:::format_vpc_input_data(...)
     11.         └─vpc:::standardize_column(...)
    
    [ FAIL 6 | WARN 19 | SKIP 2 | PASS 31 ]
    Error:
    ! Test failures.
    Execution halted

Package: xpose
Check: tests
New result: ERROR
    Running ‘testthat.R’ [37s/37s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(xpose)
    Loading required package: ggplot2
    
    Attaching package: 'xpose'
    
    The following object is masked from 'package:stats':
    
        filter
    
    > 
    > test_check("xpose")
    Saving _problems/test-vpc-45.R
    [ FAIL 1 | WARN 0 | SKIP 7 | PASS 491 ]
    
    ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
    • On CRAN (7): 'test-read_nm_files.R:54:3', 'test-read_nm_tables.R:61:3',
      'test-read_nm_tables.R:71:3', 'test-vpc.R:50:3', 'test-xpose_data.R:31:3',
      'test-xpose_data.R:47:3', 'test-xpose_save.R:14:1'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test-vpc.R:45:3'): vpc_data works properly with xpdb tables ───────
    Expected `xpdb_vpc_test$special` to be equivalent to `ctrl_special$special`.
    Component "data": Component 1: Length mismatch: comparison on first 20 components
    Component "data": Component 1: Component 7: target is numeric, current is character
    Component "data": Component 1: Component 8: target is NULL, current is numeric
    Component "data": Component 1: Component 11: target is character, current is list
    Component "data": Component 1: Component 12: Length mismatch: comparison on first 1 components
    Component "data": Component 1: Component 12: Component 1: target is character, current is logical
    Component "data": Component 1: Component 14: target is logical, current is character
    Component "data": Component 1: Component 15: target is character, current is NULL
    Component "data": Component 1: Component 16: target is NULL, current is numeric
    ...
    
    [ FAIL 1 | WARN 0 | SKIP 7 | PASS 491 ]
    Error:
    ! Test failures.
    Execution halted