Package: PhenotypeR
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown
  --- finished re-building ‘a01_DatabaseDiagnostics.Rmd’
  
  --- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown
  trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
  Content type 'application/zip' length 6754786 bytes (6.4 MB)
  ==================================================
  downloaded 6.4 MB
  
  
  Quitting from lines 61-63 [unnamed-chunk-3] (a02_CodelistDiagnostics.Rmd)
  Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics:
  unused argument (settingsColumns = settingsColumns)
  --- failed re-building ‘a02_CodelistDiagnostics.Rmd’
  
  --- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown
  trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
  Content type 'application/zip' length 6754786 bytes (6.4 MB)
  ==================================================
  downloaded 6.4 MB
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/PhenotypeR.Rcheck/vign_test/PhenotypeR/vignettes/a03_CohortDiagnostics_files/figure-html/unnamed-chunk-5-1.png
  672x288 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 25275 bytes
  Input file size = 25389 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19669
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19669
  
  Output IDAT size = 19669 bytes (5606 bytes decrease)
  Output file size = 19747 bytes (5642 bytes = 22.22% decrease)
  
  --- finished re-building ‘a03_CohortDiagnostics.Rmd’
  
  --- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown
  --- finished re-building ‘a04_MatchedDiagnostics.Rmd’
  
  --- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown
  [WARNING] This document format requires a nonempty <title> element.
    Defaulting to 'a05_PopulationDiagnostics.knit' as the title.
    To specify a title, use 'title' in metadata or --metadata title="...".
  --- finished re-building ‘a05_PopulationDiagnostics.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘a02_CodelistDiagnostics.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted