* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/viruslearner.Rcheck’
* using R Under development (unstable) (2024-11-05 r87288)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-1) 14.2.0
    GNU Fortran (Debian 14.2.0-1) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘viruslearner/DESCRIPTION’ ... OK
* this is package ‘viruslearner’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Juan Pablo Acuña González <acua6307@gmail.com>’

New submission

Package was archived on CRAN

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-04-21 as issues were not corrected
    in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘viruslearner’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0s/0s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [3s/3s] ERROR
  Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(viruslearner)
  > 
  > test_check("viruslearner")
  Loading required namespace: baguette
  Failed with error:  'there is no package called 'baguette''
  Loading required namespace: baguette
  Failed with error:  'there is no package called 'baguette''
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-cd_ens.R:9:3'): `cd_ens()` works as expected ───────────────────
  <packageNotFoundError/error/condition>
  Error in `library(Cubist)`: there is no package called 'Cubist'
  Backtrace:
      ▆
   1. └─base::library(Cubist) at test-cd_ens.R:9:3
  ── Error ('test-cd_fit.R:11:3'): `cd_fit()` works as expected ──────────────────
  Error in `stacks::fit_members(obj_mod1)`: The packages ranger, kernlab, and kknn need to be installed before fitting members.
  Backtrace:
      ▆
   1. ├─base::print(...)
   2. └─viruslearner::cd_fit(...)
   3.   └─stacks::fit_members(obj_mod1)
   4.     └─stacks:::check_for_required_packages(model_stack)
   5.       └─stacks:::error_needs_install(pkgs, installed, call = caller_env())
   6.         └─cli::cli_abort(...)
   7.           └─rlang::abort(...)
  ── Error ('test-cd_stack.R:2:3'): `cd_stack()` plots as expected ───────────────
  <packageNotFoundError/error/condition>
  Error in `library(baguette)`: there is no package called 'baguette'
  Backtrace:
      ▆
   1. └─base::library(baguette) at test-cd_stack.R:2:3
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/0s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE