* using log directory 'd:/RCompile/CRANincoming/R-devel/viralmodels.Rcheck' * using R version 4.4.0 alpha (2024-03-26 r86209 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'viralmodels/DESCRIPTION' ... OK * this is package 'viralmodels' version '1.3.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: 'Juan Pablo Acuña González <22253567@uagro.mx>' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'viralmodels' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running 'testthat.R' Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(viralmodels) > > test_check("viralmodels") -- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 -- v dplyr 1.1.4 v readr 2.1.5 v forcats 1.0.0 v stringr 1.5.1 v ggplot2 3.5.0 v tibble 3.2.1 v lubridate 1.9.3 v tidyr 1.3.1 v purrr 1.0.2 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x readr::edition_get() masks testthat::edition_get() x dplyr::filter() masks stats::filter() x purrr::is_null() masks testthat::is_null() x dplyr::lag() masks stats::lag() x readr::local_edition() masks testthat::local_edition() x dplyr::matches() masks tidyr::matches(), testthat::matches() i Use the conflicted package () to force all conflicts to become errors Loading required package: parsnip Attaching package: 'kernlab' The following object is masked from 'package:purrr': cross The following object is masked from 'package:ggplot2': alpha Loading required package: Matrix Attaching package: 'Matrix' The following objects are masked from 'package:tidyr': expand, pack, unpack Loaded glmnet 4.1-8 * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR