R Under development (unstable) (2023-10-02 r85253 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(vcfppR)
> 
> test_check("vcfppR")
List of 10
 $ samples: chr [1:3202] "HG00096" "HG00097" "HG00099" "HG00100" ...
 $ chr    : chr [1:63] "chr21" "chr21" "chr21" "chr21" ...
 $ pos    : int [1:63] 5030082 5030088 5030105 5030253 5030278 5030347 5030356 5030357 5030391 5030446 ...
 $ id     : chr [1:63] "." "." "." "." ...
 $ ref    : chr [1:63] "G" "C" "C" "G" ...
 $ alt    : chr [1:63] "A" "T" "A" "T" ...
 $ qual   : num [1:63] 70.1 2773.1 3897.8 102.6 868.9 ...
 $ filter : chr [1:63] "VQSRTrancheSNP99.80to100.00" "VQSRTrancheSNP99.80to100.00" "VQSRTrancheSNP99.80to100.00" "VQSRTrancheSNP99.80to100.00" ...
 $ info   : chr [1:63] "AC=2;AF=0.000616523;AN=3244;DP=2498;FS=0;MLEAC=1;MLEAF=0.0003083;MQ=17.07;MQ0=0;QD=17.52;SOR=3.258;VQSLOD=-32.6"| __truncated__ "AC=127;AF=0.0400126;AN=3174;BaseQRankSum=0.736;ClippingRankSum=0.736;DP=2750;FS=0;InbreedingCoeff=0.0015;MLEAC="| __truncated__ "AC=128;AF=0.0352811;AN=3628;BaseQRankSum=0.736;ClippingRankSum=0.727;DP=3476;FS=0;InbreedingCoeff=-0.0015;MLEAC"| __truncated__ "AC=1;AF=0.000165837;AN=6030;BaseQRankSum=-0.583;ClippingRankSum=-0.259;DP=19530;FS=0;InbreedingCoeff=-0.0274;ML"| __truncated__ ...
 $ gt     : int [1:63, 1:3202] NA 2 2 0 0 0 0 0 0 0 ...
> proc.time()
   user  system elapsed 
   0.56    0.10    0.65