* using log directory ‘/srv/hornik/tmp/CRAN_pretest/vascr.Rcheck’
* using R Under development (unstable) (2026-01-07 r89288)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (1)
    Debian flang version 21.1.8 (1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘vascr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘vascr’ version ‘0.1.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/6s] NOTE
Maintainer: ‘James JW Hucklesby <james.hucklesby@auckland.ac.nz>’

New submission

Possibly misspelled words in DESCRIPTION:
  ECIS (15:87)
  Hucklesby (15:385)
  al (15:398)
  cellZscope (15:109)
  et (15:395)
  xCELLigence (15:93)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘vascr’ can be installed ... [9s/9s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking whether startup messages can be suppressed ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [24s/24s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [89s/89s] ERROR
  Running ‘testthat.R’ [89s/89s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(vascr)
  > 
  > test_check("vascr")
  Saving _problems/test-vascr_find-147.R
  Ignoring unknown labels:
  * weight : "Other note"
  Ignoring unknown labels:
  * weight : "Other note"
  [ FAIL 1 | WARN 1 | SKIP 83 | PASS 5 ]
  
  ══ Skipped tests (83) ══════════════════════════════════════════════════════════
  • On CRAN (81): 'test-import_instrument_data.R:3:1',
    'test-import_instrument_data.R:21:1', 'test-import_instrument_data.R:34:3',
    'test-transformation.R:4:1', 'test-transformation.R:36:1',
    'test-transformation.R:40:1', 'test-transformation.R:54:1',
    'test-transformation.R:63:1', 'test-transformation.R:68:1',
    'test-transformation.R:74:1', 'test-transformation.R:80:1',
    'test-transformation.R:86:1', 'test-transformation.R:94:1',
    'test-transformation.R:100:1', 'test-utilities.R:1:1',
    'test-vascr_anova.R:9:1', 'test-vascr_anova.R:17:1',
    'test-vascr_anova.R:22:1', 'test-vascr_anova.R:26:1',
    'test-vascr_anova.R:30:1', 'test-vascr_anova.R:34:1',
    'test-vascr_anova.R:39:1', 'test-vascr_anova.R:44:1',
    'test-vascr_anova.R:50:1', 'test-vascr_anova.R:56:1',
    'test-vascr_anova.R:62:1', 'test-vascr_anova.R:68:1',
    'test-vascr_anova.R:79:1', 'test-vascr_anova.R:88:1',
    'test-vascr_anova.R:96:1', 'test-vascr_anova.R:101:1',
    'test-vascr_anova.R:114:1', 'test-vascr_checks.R:1:1',
    'test-vascr_checks.R:23:1', 'test-vascr_checks.R:38:1',
    'test-vascr_combine.R:2:1', 'test-vascr_cross_correlation.R:1:1',
    'test-vascr_export.R:1:1', 'test-vascr_find.R:1:1', 'test-vascr_find.R:12:1',
    'test-vascr_find.R:21:1', 'test-vascr_find.R:31:1', 'test-vascr_find.R:42:1',
    'test-vascr_find.R:51:1', 'test-vascr_find.R:65:1', 'test-vascr_find.R:79:1',
    'test-vascr_find.R:85:1', 'test-vascr_find.R:91:1',
    'test-vascr_find.R:103:1', 'test-vascr_find.R:120:1',
    'test-vascr_find.R:178:1', 'test-vascr_find.R:199:1',
    'test-vascr_find.R:207:1', 'test-vascr_find.R:227:1',
    'test-vascr_find.R:237:1', 'test-vascr_find.R:241:1',
    'test-vascr_find.R:245:1', 'test-vascr_find.R:253:1',
    'test-vascr_find.R:258:1', 'test-vascr_find.R:265:1',
    'test-vascr_graphics.R:3:1', 'test-vascr_graphics.R:16:1',
    'test-vascr_graphics.R:33:1', 'test-vascr_graphics.R:45:3',
    'test-vascr_graphics.R:57:5', 'test-vascr_graphics.R:69:7',
    'test-vascr_graphics.R:88:7', 'test-vascr_graphics.R:103:7',
    'test-vascr_graphics.R:115:7', 'test-vascr_import_sciospec.R:1:1',
    'test-vascr_naming.R:22:14', 'test-vascr_naming.R:43:1',
    'test-vascr_naming.R:48:1', 'test-vascr_naming.R:56:1',
    'test-vascr_naming.R:61:1', 'test-vascr_naming.R:65:1',
    'test-vascr_naming.R:162:1', 'test-vascr_naming.R:168:1',
    'test-vascr_save.R:1:1', 'test-vascr_stretch_shift.R:6:1',
    'test-vascr_subset.R:3:1'
  • empty test (2): 'test-vascr_shiny.R:1:1', 'test-vascr_shiny2.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-vascr_find.R:147:5'): vascr_titles render ──────────────────────
  Error in `grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, as.numeric(NA))`: conversion failure on '(μF/cm' in 'mbcsToSbcs': for μ (U+03BC)
  Backtrace:
       ▆
    1. ├─vascr (local) test_render("Cm") at test-vascr_find.R:161:3
    2. │ ├─base::print(graph) at test-vascr_find.R:147:5
    3. │ └─ggplot2 (local) `print.ggplot2::ggplot`(graph)
    4. │   ├─ggplot2::ggplot_gtable(data)
    5. │   └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
    6. │     └─layout$render(geom_grobs, data, theme, plot@labels)
    7. │       └─ggplot2 (local) render(..., self = self)
    8. │         └─self$render_labels(labels, theme)
    9. │           └─ggplot2 (local) render_labels(..., self = self)
   10. │             └─base::lapply(...)
   11. │               └─ggplot2 (local) FUN(X[[i]], ...)
   12. │                 └─base::lapply(...)
   13. │                   └─ggplot2 (local) FUN(X[[i]], ...)
   14. │                     └─ggplot2::element_render(...)
   15. │                       ├─ggplot2::element_grob(el, ...)
   16. │                       └─ggtext:::element_grob.element_markdown(el, ...)
   17. │                         └─gridtext::richtext_grob(...)
   18. │                           └─base::mapply(...)
   19. │                             └─gridtext (local) `<fn>`(...)
   20. │                               └─gridtext:::bl_calc_layout(vbox_outer)
   21. ├─gridtext (local) `<fn>`("(μF/cm", `<gpar>`)
   22. │ └─gridtext:::text_info(...)
   23. │   └─grid::convertHeight(...)
   24. │     └─grid::convertUnit(...)
   25. │       └─grid:::grid.Call(...)
   26. └─grid (local) `<fn>`(`<text>`)
   27.   ├─grid::heightDetails(x)
   28.   └─grid:::heightDetails.text(x)
   29.     └─grid:::grid.Call(...)
  
  [ FAIL 1 | WARN 1 | SKIP 83 | PASS 5 ]
  Deleting unused snapshots: 'vascr_find/alpha.svg', 'vascr_find/ccl.svg',
  'vascr_find/ci.svg', 'vascr_find/cm.svg', 'vascr_find/cpe-a.svg',
  'vascr_find/cpe-n.svg', 'vascr_find/drift.svg', 'vascr_find/rmed.svg',
  'vascr_find/rmse.svg', and 'vascr_find/ter.svg'
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE