downloading reverse dependencies ‘AzureCosmosR’, ‘AzureRMR’, ‘AzureTableStor’, ‘biblioverlap’, ‘bidsr’, ‘bigmemory’, ‘bigReg’, ‘biocompute’, ‘blastula’, ‘boxly’, ‘bpmnR’, ‘camtrapdp’, ‘conditionz’, ‘connectapi’, ‘connections’, ‘corella’, ‘csdb’, ‘CytobankAPI’, ‘dataone’, ‘datapack’, ‘delayed’, ‘deliberr’, ‘dgpsi’, ‘duckspatial’, ‘ecce’, ‘ecocomDP’, ‘editbl’, ‘EML’, ‘emuR’, ‘EQUALencrypt’, ‘FaaSr’, ‘fanyi’, ‘filearray’, ‘flextable’, ‘forestly’, ‘geoflow’, ‘ggfigdone’, ‘gittargets’, ‘googledrive’, ‘harmonydata’, ‘hmsr’, ‘ids’, ‘IRkernel’, ‘leafpop’, ‘memofunc’, ‘metalite.sl’, ‘mini007’, ‘mlr3’, ‘mlr3batchmark’, ‘mlr3hyperband’, ‘mlr3oml’, ‘myownrobs’, ‘neotoma2’, ‘noctua’, ‘nodbi’, ‘officedown’, ‘officer’, ‘oppr’, ‘pii’, ‘PKbioanalysis’, ‘plnr’, ‘plotscaper’, ‘polished’, ‘qrlabelr’, ‘RAthena’, ‘ravepipeline’, ‘rCoinbase’, ‘reactRouter’, ‘RestRserve’, ‘RMixpanel’, ‘RNeXML’, ‘RobinHood’, ‘rPublic’, ‘RTD’, ‘rush’, ‘SeaSondeR’, ‘sentryR’, ‘shiny.reglog’, ‘shinyalert’, ‘shinyscreenshot’, ‘sixtyfour’, ‘smdocker’, ‘sparklyr’, ‘synchronicity’, ‘tigris’, ‘TKCat’, ‘villager’, ‘xaringanExtra’, ‘AzureContainers’, ‘AzureStor’, ‘envvar’, ‘gofigR’, ‘here’, ‘PhilipsHue’, ‘putior’, ‘RcppUUID’, ‘renv’, ‘rotor’, ‘vegdata’ trying URL 'file:///data/Repositories/CRAN/src/contrib/AzureCosmosR_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/AzureRMR_2.4.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/AzureTableStor_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/biblioverlap_1.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bidsr_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bigmemory_4.6.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bigReg_0.1.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/biocompute_1.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/blastula_0.3.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/boxly_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bpmnR_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/camtrapdp_0.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/conditionz_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/connectapi_0.10.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/connections_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/corella_0.1.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/csdb_2025.7.30.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CytobankAPI_2.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/dataone_2.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/datapack_1.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/delayed_0.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/deliberr_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/dgpsi_2.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/duckspatial_0.9.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ecce_3.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ecocomDP_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/editbl_1.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EML_2.0.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/emuR_2.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EQUALencrypt_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/FaaSr_1.4.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fanyi_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/filearray_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/flextable_0.9.10.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/forestly_0.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/geoflow_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ggfigdone_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gittargets_0.0.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/googledrive_2.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/harmonydata_0.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/hmsr_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ids_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/IRkernel_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/leafpop_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/memofunc_1.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/metalite.sl_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mini007_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3_1.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3batchmark_0.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3hyperband_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3oml_0.11.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/myownrobs_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/neotoma2_1.0.11.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/noctua_2.6.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/nodbi_0.14.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/officedown_0.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/officer_0.7.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/oppr_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pii_1.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PKbioanalysis_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/plnr_2025.11.22.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/plotscaper_0.2.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/polished_0.8.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/qrlabelr_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RAthena_2.6.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ravepipeline_0.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rCoinbase_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/reactRouter_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RestRserve_1.2.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RMixpanel_0.7-1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RNeXML_2.4.11.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RobinHood_1.7.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rPublic_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RTD_0.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rush_0.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SeaSondeR_0.2.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sentryR_1.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shiny.reglog_0.5.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shinyalert_3.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shinyscreenshot_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sixtyfour_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/smdocker_0.1.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sparklyr_1.9.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/synchronicity_1.3.10.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tigris_2.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TKCat_1.1.14.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/villager_2.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/xaringanExtra_0.8.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/AzureContainers_1.3.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/AzureStor_3.7.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/envvar_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gofigR_1.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/here_1.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PhilipsHue_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/putior_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RcppUUID_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/renv_1.1.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rotor_0.3.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/vegdata_1.9.15.tar.gz' installing dependencies ‘areal’, ‘argonDash’, ‘argonR’, ‘atom4R’, ‘automagic’, ‘AzureKeyVault’, ‘AzureTableStor’, ‘Bchron’, ‘bcrypt’, ‘BED’, ‘blastula’, ‘clhs’, ‘ClickHouseHTTP’, ‘compare’, ‘constants’, ‘csutil’, ‘d4storagehub4R’, ‘dataone’, ‘datapack’, ‘dataverse’, ‘desplot’, ‘dint’, ‘dipsaus’, ‘distill’, ‘doconv’, ‘dotenv’, ‘ecr’, ‘elastic’, ‘emayili’, ‘EML’, ‘emld’, ‘equatags’, ‘filearray’, ‘frictionless’, ‘geoarrow’, ‘geometa’, ‘geonapi’, ‘geonode4R’, ‘geosapi’, ‘gmailr’, ‘gsheet’, ‘gt’, ‘gurobi’, ‘ieegio’, ‘indicspecies’, ‘ipaddress’, ‘knitcitations’, ‘lpsymphony’, ‘matlabr’, ‘metalite’, ‘metalite.ae’, ‘mlr3data’, ‘mlr3db’, ‘mockthat’, ‘modules’, ‘neonOS’, ‘neonUtilities’, ‘ocs4R’, ‘officedown’, ‘otp’, ‘ows4R’, ‘ozmaps’, ‘pandoc’, ‘paws’, ‘paws.application.integration’, ‘paws.compute’, ‘paws.developer.tools’, ‘paws.machine.learning’, ‘paws.management’, ‘paws.security.identity’, ‘pmxTools’, ‘QBMS’, ‘qrcode’, ‘qrencoder’, ‘quadkeyr’, ‘RaMS’, ‘rapiclient’, ‘RClickhouse’, ‘rcorpora’, ‘RcppMsgPack’, ‘reader’, ‘ReDaMoR’, ‘redux’, ‘RestRserve’, ‘rfigshare’, ‘rpymat’, ‘rscontract’, ‘Rserve’, ‘rstackdeque’, ‘rstudio.prefs’, ‘RTMB’, ‘rush’, ‘s3fs’, ‘scriptName’, ‘scrypt’, ‘sfarrow’, ‘shidashi’, ‘shiny.react’, ‘shinychat’, ‘sofa’, ‘SSEparser’, ‘taxadb’, ‘taxalight’, ‘thredds’, ‘threeBrain’, ‘timevis’, ‘torchvision’, ‘ulid’, ‘usmap’, ‘uuid’, ‘wrassp’, ‘xaringan’, ‘xslt’, ‘zen4R’ Warning: packages ‘elastic’, ‘gurobi’, ‘rfigshare’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘pkgfilecache’, ‘oz’, ‘NCmisc’, ‘usmapdata’, ‘contentid’, ‘locatexec’, ‘katex’, ‘plot3Drgl’, ‘paws.analytics’, ‘paws.cost.management’, ‘paws.customer.engagement’, ‘paws.database’, ‘paws.end.user.computing’, ‘paws.networking’, ‘PKNCA’, ‘freesurferformats’, ‘readNSx’, ‘rpyANTs’, ‘IRkernel’, ‘thor’, ‘neo2R’ begin installing package ‘pkgfilecache’ begin installing package ‘oz’ begin installing package ‘NCmisc’ begin installing package ‘usmapdata’ begin installing package ‘contentid’ begin installing package ‘locatexec’ begin installing package ‘katex’ begin installing package ‘plot3Drgl’ begin installing package ‘paws.analytics’ begin installing package ‘paws.cost.management’ begin installing package ‘paws.customer.engagement’ begin installing package ‘paws.database’ begin installing package ‘paws.end.user.computing’ begin installing package ‘paws.networking’ begin installing package ‘PKNCA’ begin installing package ‘readNSx’ begin installing package ‘thor’ begin installing package ‘neo2R’ begin installing package ‘frictionless’ begin installing package ‘metalite’ begin installing package ‘rscontract’ begin installing package ‘csutil’ begin installing package ‘rstackdeque’ begin installing package ‘clhs’ begin installing package ‘geoarrow’ begin installing package ‘areal’ begin installing package ‘quadkeyr’ begin installing package ‘emld’ * installing *source* package ‘oz’ ... ** this is package ‘oz’ version ‘1.0-22’ ** package ‘oz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oz) begin installing package ‘neonUtilities’ * installing *source* package ‘rscontract’ ... ** this is package ‘rscontract’ version ‘0.1.2’ ** package ‘rscontract’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rscontract) begin installing package ‘neonOS’ * installing *source* package ‘neo2R’ ... ** this is package ‘neo2R’ version ‘2.4.2’ ** package ‘neo2R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neo2R) begin installing package ‘wrassp’ * installing *source* package ‘locatexec’ ... ** this is package ‘locatexec’ version ‘0.1.1’ ** package ‘locatexec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (locatexec) begin installing package ‘compare’ * installing *source* package ‘pkgfilecache’ ... ** this is package ‘pkgfilecache’ version ‘0.1.5’ ** package ‘pkgfilecache’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgfilecache) begin installing package ‘matlabr’ * installing *source* package ‘rstackdeque’ ... ** this is package ‘rstackdeque’ version ‘1.1.1’ ** package ‘rstackdeque’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstackdeque) begin installing package ‘paws.application.integration’ * installing *source* package ‘usmapdata’ ... ** this is package ‘usmapdata’ version ‘1.0.0’ ** package ‘usmapdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usmapdata) begin installing package ‘paws.compute’ * installing *source* package ‘katex’ ... ** this is package ‘katex’ version ‘1.5.0’ ** package ‘katex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (katex) begin installing package ‘paws.security.identity’ * installing *source* package ‘metalite’ ... ** this is package ‘metalite’ version ‘0.1.4’ ** package ‘metalite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metalite) begin installing package ‘SSEparser’ * installing *source* package ‘contentid’ ... ** this is package ‘contentid’ version ‘0.0.19’ ** package ‘contentid’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (contentid) begin installing package ‘dotenv’ * installing *source* package ‘NCmisc’ ... ** this is package ‘NCmisc’ version ‘1.2.0’ ** package ‘NCmisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NCmisc) begin installing package ‘sfarrow’ * installing *source* package ‘neonOS’ ... ** this is package ‘neonOS’ version ‘1.1.0’ ** package ‘neonOS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neonOS) begin installing package ‘geometa’ * installing *source* package ‘emld’ ... ** this is package ‘emld’ version ‘0.5.3’ ** package ‘emld’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emld) begin installing package ‘geosapi’ * installing *source* package ‘frictionless’ ... ** this is package ‘frictionless’ version ‘1.2.1’ ** package ‘frictionless’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frictionless) begin installing package ‘geonode4R’ * installing *source* package ‘matlabr’ ... ** this is package ‘matlabr’ version ‘1.5.2’ ** package ‘matlabr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matlabr) begin installing package ‘gsheet’ * installing *source* package ‘compare’ ... ** this is package ‘compare’ version ‘0.2-6’ ** package ‘compare’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (compare) begin installing package ‘rapiclient’ * installing *source* package ‘dotenv’ ... ** this is package ‘dotenv’ version ‘1.0.3’ ** package ‘dotenv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dotenv) begin installing package ‘thredds’ * installing *source* package ‘csutil’ ... ** this is package ‘csutil’ version ‘2023.4.25’ ** package ‘csutil’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (csutil) begin installing package ‘ocs4R’ * installing *source* package ‘plot3Drgl’ ... ** this is package ‘plot3Drgl’ version ‘1.0.5’ ** package ‘plot3Drgl’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plot3Drgl) begin installing package ‘zen4R’ * installing *source* package ‘sfarrow’ ... ** this is package ‘sfarrow’ version ‘0.4.1’ ** package ‘sfarrow’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sfarrow) begin installing package ‘atom4R’ * installing *source* package ‘gsheet’ ... ** this is package ‘gsheet’ version ‘0.4.6’ ** package ‘gsheet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gsheet) begin installing package ‘d4storagehub4R’ * installing *source* package ‘areal’ ... ** this is package ‘areal’ version ‘0.1.8’ ** package ‘areal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (areal) begin installing package ‘dataverse’ * installing *source* package ‘SSEparser’ ... ** this is package ‘SSEparser’ version ‘0.1.0’ ** package ‘SSEparser’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SSEparser) begin installing package ‘rcorpora’ * installing *source* package ‘quadkeyr’ ... ** this is package ‘quadkeyr’ version ‘0.1.0’ ** package ‘quadkeyr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quadkeyr) begin installing package ‘mlr3data’ * installing *source* package ‘rapiclient’ ... ** this is package ‘rapiclient’ version ‘0.1.8’ ** package ‘rapiclient’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rapiclient) begin installing package ‘redux’ * installing *source* package ‘rcorpora’ ... ** this is package ‘rcorpora’ version ‘2.0.1’ ** package ‘rcorpora’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcorpora) begin installing package ‘uuid’ * installing *source* package ‘thor’ ... ** this is package ‘thor’ version ‘1.2.0’ ** package ‘thor’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplTlQb3/R.INSTALL683db25d510c8/thor/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lmdb/mdb.c -o lmdb/mdb.o lmdb/mdb.c: In function ‘mdb_page_dirty’: lmdb/mdb.c:2384:13: warning: variable ‘rc’ set but not used [-Wunused-but-set-variable] 2384 | int rc, (*insert)(MDB_ID2L, MDB_ID2 *); | ^~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lmdb/midl.c -o lmdb/midl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registration.c -o registration.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c thor.c -o thor.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o thor.so lmdb/mdb.o lmdb/midl.o registration.o thor.o util.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplTlQb3/R.INSTALL683db25d510c8/thor/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-thor/00new/thor/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (thor) begin installing package ‘rstudio.prefs’ * installing *source* package ‘geonode4R’ ... ** this is package ‘geonode4R’ version ‘0.1-2’ ** package ‘geonode4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geonode4R) begin installing package ‘Bchron’ * installing *source* package ‘thredds’ ... ** this is package ‘thredds’ version ‘0.1-4’ ** package ‘thredds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (thredds) begin installing package ‘sofa’ * installing *source* package ‘dataverse’ ... ** this is package ‘dataverse’ version ‘0.3.16’ ** package ‘dataverse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dataverse) begin installing package ‘lpsymphony’ * installing *source* package ‘neonUtilities’ ... ** this is package ‘neonUtilities’ version ‘3.0.2’ ** package ‘neonUtilities’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neonUtilities) begin installing package ‘RTMB’ * installing *source* package ‘ocs4R’ ... ** this is package ‘ocs4R’ version ‘0.3’ ** package ‘ocs4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ocs4R) begin installing package ‘RaMS’ * installing *source* package ‘d4storagehub4R’ ... ** this is package ‘d4storagehub4R’ version ‘0.4-5’ ** package ‘d4storagehub4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (d4storagehub4R) begin installing package ‘shinychat’ * installing *source* package ‘geoarrow’ ... ** this is package ‘geoarrow’ version ‘0.4.1’ ** package ‘geoarrow’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxCvhTp/R.INSTALL683ef4d2b38fd/geoarrow/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c d2s.c -o d2s.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c double_parse_fast_float.cc -o double_parse_fast_float.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c geoarrow.c -o geoarrow.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nanoarrow.c -o nanoarrow.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-init.c -o r-init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-kernel.c -o r-kernel.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-sf-compat.c -o r-sf-compat.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-type.c -o r-type.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c r-wk-handle-stream.cc -o r-wk-handle-stream.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-wk-impl.c -o r-wk-impl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-wk-writer.c -o r-wk-writer.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o geoarrow.so d2s.o double_parse_fast_float.o geoarrow.o nanoarrow.o r-init.o r-kernel.o r-sf-compat.o r-type.o r-wk-handle-stream.o r-wk-impl.o r-wk-writer.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxCvhTp/R.INSTALL683ef4d2b38fd/geoarrow/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-geoarrow/00new/geoarrow/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geoarrow) begin installing package ‘automagic’ * installing *source* package ‘redux’ ... ** this is package ‘redux’ version ‘1.1.5’ ** package ‘redux’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis Using PKG_LIBS=-lhiredis ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpX8OsOa/R.INSTALL68c1324b53db2/redux/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connection.c -o connection.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c conversions.c -o conversions.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registration.c -o registration.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c subscribe.c -o subscribe.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o redux.so connection.o conversions.o registration.o subscribe.o -lhiredis -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpX8OsOa/R.INSTALL68c1324b53db2/redux/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redux/00new/redux/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redux) begin installing package ‘otp’ * installing *source* package ‘rstudio.prefs’ ... ** this is package ‘rstudio.prefs’ version ‘0.1.9’ ** package ‘rstudio.prefs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstudio.prefs) begin installing package ‘argonR’ * installing *source* package ‘automagic’ ... ** this is package ‘automagic’ version ‘0.5.1’ ** package ‘automagic’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (automagic) begin installing package ‘desplot’ * installing *source* package ‘sofa’ ... ** this is package ‘sofa’ version ‘0.4.0’ ** package ‘sofa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sofa) begin installing package ‘QBMS’ * installing *source* package ‘readNSx’ ... ** this is package ‘readNSx’ version ‘0.0.6’ ** package ‘readNSx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOFadv8/R.INSTALL683e73c81a4b5/readNSx/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rawToSEXP.cpp -o rawToSEXP.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c readBCI2R.cpp -o readBCI2R.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c readNSxDataPacket.cpp -o readNSxDataPacket.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o readNSx.so cpp11.o rawToSEXP.o readBCI2R.o readNSxDataPacket.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOFadv8/R.INSTALL683e73c81a4b5/readNSx/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-readNSx/00new/readNSx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readNSx) begin installing package ‘qrencoder’ * installing *source* package ‘lpsymphony’ ... ** this is package ‘lpsymphony’ version ‘1.38.0’ ** package ‘lpsymphony’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAVaoLU/R.INSTALL690a77d01e983/lpsymphony/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lp_symphony.cc -o lp_symphony.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o lpsymphony.so lp_symphony.o -lSym -lCgl -lOsiClp -lClp -lOsi -lCoinUtils -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAVaoLU/R.INSTALL690a77d01e983/lpsymphony/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lpsymphony/00new/lpsymphony/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lpsymphony) begin installing package ‘dipsaus’ * installing *source* package ‘PKNCA’ ... ** this is package ‘PKNCA’ version ‘0.12.1’ ** package ‘PKNCA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PKNCA) begin installing package ‘shidashi’ * installing *source* package ‘zen4R’ ... ** this is package ‘zen4R’ version ‘0.10.4’ ** package ‘zen4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zen4R) begin installing package ‘distill’ * installing *source* package ‘RaMS’ ... ** this is package ‘RaMS’ version ‘1.4.3’ ** package ‘RaMS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RaMS) begin installing package ‘shiny.react’ * installing *source* package ‘uuid’ ... ** this is package ‘uuid’ version ‘1.2-2’ ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grp.h... yes checking for langinfo.h... yes checking for locale.h... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for sys/file.h... yes checking for sys/ioctl.h... yes checking for sys/socket.h... yes checking for sys/sockio.h... no checking for sys/syscall.h... yes checking for sys/sendfile.h... yes checking for sys/time.h... yes checking for sys/un.h... yes checking for unistd.h... (cached) yes checking for net/if.h... yes checking for net/if_dl.h... no checking for dirfd... yes checking for err... yes checking for errx... yes checking for getexecname... no checking for getrandom... yes checking for jrand48... yes checking for llseek... no checking for lchown... yes checking for mempcpy... yes checking for mkostemp... yes checking for nanosleep... yes checking for sendfile... yes checking for srandom... yes checking for strnchr... no checking for strndup... yes checking for strnlen... yes checking for usleep... yes checking for warn... yes checking for warnx... yes checking for flock... yes checking for struct sockaddr.sa_len... no checking for dlfcn.h... yes checking for library containing dlsym... none required checking for thread local storage (TLS) support... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRgAhPk/R.INSTALL68dad1d2e52e9/uuid/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R.c -o R.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Ruuid.c -o Ruuid.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clear.c -o clear.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c compare.c -o compare.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c copy.c -o copy.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gen_uuid.c -o gen_uuid.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isnull.c -o isnull.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c md5.c -o md5.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pack.c -o pack.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parse.c -o parse.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rand.c -o rand.o rand.c: In function ‘load_rand’: rand.c:104:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 104 | if (!(fn_rand = (rand_t) dlsym(RTLD_DEFAULT, "rand")) || | ^ rand.c:109:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 109 | !(fn_random = (random_t) dlsym(RTLD_DEFAULT, "random")) || | ^ rand.c:110:24: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 110 | !(fn_srandom = (srandom_t) dlsym(RTLD_DEFAULT, "srandom")) || | ^ rand.c:112:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 112 | !(fn_srand = (srand_t) dlsym(RTLD_DEFAULT, "srand"))) | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c randutils.c -o randutils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha1.c -o sha1.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unpack.c -o unpack.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unparse.c -o unparse.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o uuid.so R.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o md5.o pack.o parse.o rand.o randutils.o sha1.o unpack.o unparse.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRgAhPk/R.INSTALL68dad1d2e52e9/uuid/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-uuid/00new/uuid/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (uuid) begin installing package ‘Rserve’ * installing *source* package ‘shinychat’ ... ** this is package ‘shinychat’ version ‘0.3.0’ ** package ‘shinychat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinychat) begin installing package ‘knitcitations’ * installing *source* package ‘otp’ ... ** this is package ‘otp’ version ‘0.1.1’ ** package ‘otp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (otp) begin installing package ‘xslt’ * installing *source* package ‘argonR’ ... ** this is package ‘argonR’ version ‘0.2.0’ ** package ‘argonR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (argonR) begin installing package ‘RcppMsgPack’ * installing *source* package ‘shiny.react’ ... ** this is package ‘shiny.react’ version ‘0.4.0’ ** package ‘shiny.react’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.react) begin installing package ‘constants’ * installing *source* package ‘mlr3data’ ... ** this is package ‘mlr3data’ version ‘0.9.0’ ** package ‘mlr3data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3data) begin installing package ‘mockthat’ * installing *source* package ‘paws.cost.management’ ... ** this is package ‘paws.cost.management’ version ‘0.9.0’ ** package ‘paws.cost.management’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.cost.management) begin installing package ‘scrypt’ * installing *source* package ‘shidashi’ ... ** this is package ‘shidashi’ version ‘0.1.6’ ** package ‘shidashi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shidashi) begin installing package ‘emayili’ * installing *source* package ‘constants’ ... ** this is package ‘constants’ version ‘2022.0’ ** package ‘constants’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (constants) begin installing package ‘gmailr’ * installing *source* package ‘mockthat’ ... ** this is package ‘mockthat’ version ‘0.2.8’ ** package ‘mockthat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mockthat) begin installing package ‘timevis’ * installing *source* package ‘Bchron’ ... ** this is package ‘Bchron’ version ‘4.7.8’ ** package ‘Bchron’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpp01EuC/R.INSTALL6902371e5c067/Bchron/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Bchron.c -o Bchron.o In file included from Bchron.c:4: Bchron.c: In function ‘dtweedielogwsmallp’: /home/hornik/tmp/R/include/Rmath.h:252:25: warning: ‘*A[0]’ may be used uninitialized [-Wmaybe-uninitialized] 252 | #define fmax2 Rf_fmax2 Bchron.c:100:12: note: in expansion of macro ‘fmax2’ 100 | double m=fmax2(A[0],hij-lowj+1); | ^~~~~ gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Bchron.so Bchron.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp01EuC/R.INSTALL6902371e5c067/Bchron/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Bchron/00new/Bchron/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Bchron) begin installing package ‘s3fs’ * installing *source* package ‘desplot’ ... ** this is package ‘desplot’ version ‘1.10’ ** package ‘desplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (desplot) begin installing package ‘ipaddress’ * installing *source* package ‘knitcitations’ ... ** this is package ‘knitcitations’ version ‘1.0.12’ ** package ‘knitcitations’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitcitations) begin installing package ‘paws.developer.tools’ * installing *source* package ‘wrassp’ ... ** this is package ‘wrassp’ version ‘1.0.6’ ** package ‘wrassp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl6F78C/R.INSTALL686c3683815dd/wrassp/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/acf.c -o assp/acf.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/dataobj.c -o assp/dataobj.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/freqconv.c -o assp/freqconv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/mhs.c -o assp/mhs.o assp/mhs.c: In function ‘computeMHS’: assp/mhs.c:448:12: warning: variable ‘FILE_IN’ set but not used [-Wunused-but-set-variable] 448 | int FILE_IN, FILE_OUT, CREATED, VOICED; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/smp2dur.c -o assp/smp2dur.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/asspana.c -o assp/asspana.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/diff.c -o assp/diff.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/headers.c -o assp/headers.o assp/headers.c: In function ‘getAIFhdr’: assp/headers.c:881:12: warning: variable ‘blockSize’ set but not used [-Wunused-but-set-variable] 881 | uint32_t blockSize; | ^~~~~~~~~ assp/headers.c: In function ‘getCSLhdr’: assp/headers.c:1230:12: warning: variable ‘peakMag’ set but not used [-Wunused-but-set-variable] 1230 | int16_t peakMag; | ^~~~~~~ assp/headers.c: In function ‘getWAVhdr’: assp/headers.c:1827:22: warning: variable ‘lspPosMask’ set but not used [-Wunused-but-set-variable] 1827 | uint32_t byteRate, lspPosMask; | ^~~~~~~~~~ assp/headers.c:1827:12: warning: variable ‘byteRate’ set but not used [-Wunused-but-set-variable] 1827 | uint32_t byteRate, lspPosMask; | ^~~~~~~~ assp/headers.c: In function ‘putSSFFhdr’: assp/headers.c:2823:7: warning: unused variable ‘prev_header_length’ [-Wunused-variable] 2823 | int prev_header_length = strlen(header); | ^~~~~~~~~~~~~~~~~~ assp/headers.c: At top level: assp/headers.c:874:11: warning: ‘getAIFhdr’ defined but not used [-Wunused-function] 874 | LOCAL int getAIFhdr(DOBJ *dop) | ^~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/miscstring.c -o assp/miscstring.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/spectra.c -o assp/spectra.o assp/spectra.c: In function ‘freeSPECT_GD’: assp/spectra.c:734:13: warning: unused variable ‘gd’ [-Wunused-variable] 734 | SPECT_GD *gd; | ^~ assp/spectra.c: In function ‘getCepstrum’: assp/spectra.c:932:23: warning: unused variable ‘M’ [-Wunused-variable] 932 | register long n, N, M, L; | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/asspfio.c -o assp/asspfio.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/dsputils.c -o assp/dsputils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/isgerman.c -o assp/isgerman.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/myrand.c -o assp/myrand.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/statistics.c -o assp/statistics.o assp/statistics.c: In function ‘statPrintHist’: assp/statistics.c:478:10: warning: unused variable ‘centre’ [-Wunused-variable] 478 | double centre; | ^~~~~~ assp/statistics.c:477:10: warning: unused variable ‘i’ [-Wunused-variable] 477 | size_t i; | ^ assp/statistics.c:476:14: warning: unused variable ‘nd1’ [-Wunused-variable] 476 | int nd, nd1; | ^~~ assp/statistics.c:476:10: warning: unused variable ‘nd’ [-Wunused-variable] 476 | int nd, nd1; | ^~ assp/statistics.c:475:10: warning: unused variable ‘format’ [-Wunused-variable] 475 | char format[32]; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/asspmess.c -o assp/asspmess.o assp/asspmess.c: In function ‘prtAsspMsg’: assp/asspmess.c:169:9: warning: unused variable ‘funcVal’ [-Wunused-variable] 169 | int funcVal; | ^~~~~~~ assp/asspmess.c:168:20: warning: unused variable ‘indent’ [-Wunused-variable] 168 | char *msg, *bug, indent[16]; | ^~~~~~ assp/asspmess.c:168:15: warning: unused variable ‘bug’ [-Wunused-variable] 168 | char *msg, *bug, indent[16]; | ^~~ assp/asspmess.c:168:9: warning: unused variable ‘msg’ [-Wunused-variable] 168 | char *msg, *bug, indent[16]; | ^~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/fft.c -o assp/fft.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/ksv.c -o assp/ksv.o assp/ksv.c: In function ‘computeKSV’: assp/ksv.c:503:20: warning: unused variable ‘n’ [-Wunused-variable] 503 | int err, nd, n, type; | ^ assp/ksv.c:503:16: warning: unused variable ‘nd’ [-Wunused-variable] 503 | int err, nd, n, type; | ^~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/myrint.c -o assp/myrint.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/trace.c -o assp/trace.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/aucheck.c -o assp/aucheck.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/fgetl.c -o assp/fgetl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/labelobj.c -o assp/labelobj.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/numdecim.c -o assp/numdecim.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/winfuncs.c -o assp/winfuncs.o assp/winfuncs.c: In function ‘listWFs’: assp/winfuncs.c:1139:11: warning: unused variable ‘specs’ [-Wunused-variable] 1139 | WFDATA *specs; | ^~~~~ assp/winfuncs.c:1138:11: warning: unused variable ‘wPtr’ [-Wunused-variable] 1138 | WFLIST *wPtr; | ^~~~ assp/winfuncs.c:1137:14: warning: unused variable ‘m’ [-Wunused-variable] 1137 | int l, m; | ^ assp/winfuncs.c:1137:11: warning: unused variable ‘l’ [-Wunused-variable] 1137 | int l, m; | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/auconv.c -o assp/auconv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/filter.c -o assp/filter.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/lpc.c -o assp/lpc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/parsepath.c -o assp/parsepath.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/zcr.c -o assp/zcr.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/bitarray.c -o assp/bitarray.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/filters.c -o assp/filters.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/math.c -o assp/math.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/rfc.c -o assp/rfc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/chain.c -o assp/chain.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/fmt.c -o assp/fmt.o assp/fmt.c:1795:11: warning: ‘printRaw’ defined but not used [-Wunused-function] 1795 | LOCAL int printRaw(FMTDATA *fPtr, long frameNr, int numFMT, DOBJ *dop) | ^~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/memswab.c -o assp/memswab.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/rms.c -o assp/rms.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dataobj.c -o dataobj.o dataobj.c: In function ‘dobj2AsspDataObj’: dataobj.c:168:21: warning: unused variable ‘genVar’ [-Wunused-variable] 168 | TSSFF_Generic *genVar = NULL; | ^~~~~~ dataobj.c: In function ‘getDObjTrackData’: dataobj.c:403:21: warning: variable ‘i8Ptr’ set but not used [-Wunused-but-set-variable] 403 | int8_t *i8Ptr; | ^~~~~ dataobj.c:395:21: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 395 | int i, | ^ dataobj.c: In function ‘sexp2dobj’: dataobj.c:606:21: warning: unused variable ‘varNames’ [-Wunused-variable] 606 | varNames; | ^~~~~~~~ dataobj.c:600:21: warning: unused variable ‘numFields’ [-Wunused-variable] 600 | size_t numFields = -1; | ^~~~~~~~~ dataobj.c: In function ‘addTrackData’: dataobj.c:892:21: warning: variable ‘i8Ptr’ set but not used [-Wunused-but-set-variable] 892 | int8_t *i8Ptr; | ^~~~~ dataobj.c:884:21: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 884 | int i, | ^ dataobj.c: At top level: dataobj.c:140:1: warning: ‘DObjFinalizer’ defined but not used [-Wunused-function] 140 | DObjFinalizer(SEXP dPtr) | ^~~~~~~~~~~~~ dataobj.c: In function ‘getDObjTrackData’: dataobj.c:411:21: warning: ‘Rans’ may be used uninitialized [-Wmaybe-uninitialized] 411 | double *Rans; | ^~~~ dataobj.c:412:21: warning: ‘Ians’ may be used uninitialized [-Wmaybe-uninitialized] 412 | int *Ians; | ^~~~ dataobj.c:402:21: warning: ‘u8Ptr’ may be used uninitialized [-Wmaybe-uninitialized] 402 | uint8_t *u8Ptr; | ^~~~~ dataobj.c: In function ‘addTrackData’: dataobj.c:931:30: warning: ‘u8Ptr’ may be used uninitialized [-Wmaybe-uninitialized] 931 | u8Ptr[n] = (int8_t) numPtr[m + n * dop->numRecords]; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dataobj.c:891:21: note: ‘u8Ptr’ was declared here 891 | uint8_t *u8Ptr; | ^~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c performAssp.c -o performAssp.o performAssp.c: In function ‘computeFilter’: performAssp.c:1230:21: warning: variable ‘FILE_IN’ set but not used [-Wunused-but-set-variable] 1230 | int FILE_IN, | ^~~~~~~ In file included from wrassp.h:5, from performAssp.c:1: performAssp.c: In function ‘performAssp’: /home/hornik/tmp/R/include/Rinternals.h:924:33: warning: ‘utilsPackage’ may be used uninitialized [-Wmaybe-uninitialized] 924 | #define eval Rf_eval performAssp.c:1187:13: note: in expansion of macro ‘eval’ 1187 | eval(R_fcall3, utilsPackage); | ^~~~ performAssp.c:489:9: note: ‘utilsPackage’ was declared here 489 | utilsPackage, /* to update the prograssbar */ | ^~~~~~~~~~~~ performAssp.c:1186:28: warning: ‘newVal’ may be used uninitialized [-Wmaybe-uninitialized] 1186 | INTEGER(newVal)[0] = i + 1; | ^ performAssp.c:490:9: note: ‘newVal’ was declared here 490 | newVal, | ^~~~~~ performAssp.c:1216:12: warning: ‘res’ may be used uninitialized [-Wmaybe-uninitialized] 1216 | return res; | ^~~ performAssp.c:487:21: note: ‘res’ was declared here 487 | res, | ^~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c types.c -o types.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrassp_init.c -o wrassp_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o wrassp.so assp/acf.o assp/dataobj.o assp/freqconv.o assp/mhs.o assp/smp2dur.o assp/asspana.o assp/diff.o assp/headers.o assp/miscstring.o assp/spectra.o assp/asspfio.o assp/dsputils.o assp/isgerman.o assp/myrand.o assp/statistics.o assp/asspmess.o assp/fft.o assp/ksv.o assp/myrint.o assp/trace.o assp/aucheck.o assp/fgetl.o assp/labelobj.o assp/numdecim.o assp/winfuncs.o assp/auconv.o assp/filter.o assp/lpc.o assp/parsepath.o assp/zcr.o assp/bitarray.o assp/filters.o assp/math.o assp/rfc.o assp/chain.o assp/fmt.o assp/memswab.o assp/rms.o dataobj.o performAssp.o types.o wrassp_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl6F78C/R.INSTALL686c3683815dd/wrassp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-wrassp/00new/wrassp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wrassp) begin installing package ‘paws.machine.learning’ * installing *source* package ‘distill’ ... ** this is package ‘distill’ version ‘1.6’ ** package ‘distill’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distill) begin installing package ‘paws.management’ * installing *source* package ‘timevis’ ... ** this is package ‘timevis’ version ‘2.1.0’ ** package ‘timevis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (timevis) begin installing package ‘ReDaMoR’ * installing *source* package ‘QBMS’ ... ** this is package ‘QBMS’ version ‘2.0.0’ ** package ‘QBMS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QBMS) begin installing package ‘ClickHouseHTTP’ * installing *source* package ‘gmailr’ ... ** this is package ‘gmailr’ version ‘2.0.0’ ** package ‘gmailr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gmailr) begin installing package ‘RClickhouse’ * installing *source* package ‘emayili’ ... ** this is package ‘emayili’ version ‘0.9.3’ ** package ‘emayili’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emayili) begin installing package ‘pandoc’ * installing *source* package ‘s3fs’ ... ** this is package ‘s3fs’ version ‘0.1.7’ ** package ‘s3fs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (s3fs) begin installing package ‘xaringan’ * installing *source* package ‘xslt’ ... ** this is package ‘xslt’ version ‘1.5.1’ ** package ‘xslt’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/libxml2 Using PKG_LIBS=-lexslt -lxslt -lxml2 ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNn4mpg/R.INSTALL69c3e111f5053/xslt/src' rm -f RcppExports.o xslt.o xslt_init.o xslt.so g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from RcppExports.cpp:5: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: ‘#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xslt.cpp -o xslt.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xslt_init.cpp -o xslt_init.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o xslt.so RcppExports.o xslt.o xslt_init.o -lexslt -lxslt -lxml2 -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNn4mpg/R.INSTALL69c3e111f5053/xslt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-xslt/00new/xslt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xslt) begin installing package ‘bcrypt’ * installing *source* package ‘paws.end.user.computing’ ... ** this is package ‘paws.end.user.computing’ version ‘0.9.0’ ** package ‘paws.end.user.computing’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.end.user.computing) begin installing package ‘AzureKeyVault’ * installing *source* package ‘paws.application.integration’ ... ** this is package ‘paws.application.integration’ version ‘0.9.0’ ** package ‘paws.application.integration’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.application.integration) begin installing package ‘qrcode’ * installing *source* package ‘pandoc’ ... ** this is package ‘pandoc’ version ‘0.2.0’ ** package ‘pandoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pandoc) begin installing package ‘scriptName’ * installing *source* package ‘ClickHouseHTTP’ ... ** this is package ‘ClickHouseHTTP’ version ‘0.3.4’ ** package ‘ClickHouseHTTP’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ClickHouseHTTP) begin installing package ‘torchvision’ * installing *source* package ‘xaringan’ ... ** this is package ‘xaringan’ version ‘0.31’ ** package ‘xaringan’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xaringan) begin installing package ‘modules’ * installing *source* package ‘bcrypt’ ... ** this is package ‘bcrypt’ version ‘1.2.0’ ** package ‘bcrypt’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWdky1X/R.INSTALL6ac8175e38f64/bcrypt/src' rm -f bcrypt.so bcrypt_r.o register.o bcrypt/libstatbcrypt.a bcrypt/bcrypt.o bcrypt/blowfish.o bcrypt/bcrypt_pbkdf.o bcrypt/sha2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt_r.c -o bcrypt_r.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/bcrypt.c -o bcrypt/bcrypt.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/blowfish.c -o bcrypt/blowfish.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/sha2.c -o bcrypt/sha2.o ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt.o bcrypt/blowfish.o bcrypt/bcrypt_pbkdf.o bcrypt/sha2.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bcrypt.so bcrypt_r.o register.o -Lbcrypt -lstatbcrypt -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWdky1X/R.INSTALL6ac8175e38f64/bcrypt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bcrypt/00new/bcrypt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bcrypt) begin installing package ‘dint’ * installing *source* package ‘scriptName’ ... ** this is package ‘scriptName’ version ‘1.0.1’ ** package ‘scriptName’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scriptName) begin installing package ‘ulid’ * installing *source* package ‘qrcode’ ... ** this is package ‘qrcode’ version ‘0.3.0’ ** package ‘qrcode’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qrcode) begin installing package ‘indicspecies’ * installing *source* package ‘modules’ ... ** this is package ‘modules’ version ‘0.13.0’ ** package ‘modules’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (modules) begin installing package ‘gt’ * installing *source* package ‘dint’ ... ** this is package ‘dint’ version ‘2.1.5’ ** package ‘dint’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dint) begin installing package ‘freesurferformats’ * installing *source* package ‘scrypt’ ... ** this is package ‘scrypt’ version ‘0.1.6’ ** package ‘scrypt’ successfully unpacked and MD5 sums checked ** using staged installation + : /home/hornik/tmp/R + test -z /home/hornik/tmp/R + /home/hornik/tmp/R/bin/R CMD config CC + CC=gcc-15 + /home/hornik/tmp/R/bin/R CMD config CFLAGS + CFLAGS=-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native + /home/hornik/tmp/R/bin/R CMD config CPPFLAGS + CPPFLAGS=-I/usr/local/include + export CC + export CFLAGS + export CPPFLAGS + cd src/scrypt-1.1.6/ + chmod +x ./configure + cd src/scrypt-1.1.6/ + ./configure checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking whether gcc-15 understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc-15... gcc3 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for err.h... yes checking for sys/endian.h... no checking for sys/sysinfo.h... yes checking for clock_gettime in -lrt... yes checking for clock_gettime... yes checking for sysinfo... yes checking for posix_memalign... yes checking for struct sysinfo... yes checking for struct sysinfo.mem_unit... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphqcBYw/R.INSTALL6a18269421c4d/scrypt/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scrypt-1.1.6/lib/crypto/sha256.c -o scrypt-1.1.6/lib/crypto/sha256.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scrypt-1.1.6/lib/crypto/crypto_scrypt-ref.c -o scrypt-1.1.6/lib/crypto/crypto_scrypt-ref.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -pedantic -mtune=native -c scrypt.cpp -o scrypt.o scrypt.cpp: In function ‘bool verifyPassword(const std::string&, const std::string&)’: scrypt.cpp:197:9: warning: unused variable ‘logN’ [-Wunused-variable] 197 | int logN=0; | ^~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -pedantic -mtune=native -c base64.cpp -o base64.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o scrypt.so scrypt-1.1.6/lib/crypto/sha256.o scrypt-1.1.6/lib/crypto/crypto_scrypt-ref.o RcppExports.o scrypt.o base64.o util.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphqcBYw/R.INSTALL6a18269421c4d/scrypt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-scrypt/00new/scrypt/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scrypt) begin installing package ‘IRkernel’ * installing *source* package ‘indicspecies’ ... ** this is package ‘indicspecies’ version ‘1.8.0’ ** package ‘indicspecies’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (indicspecies) begin installing package ‘AzureTableStor’ * installing *source* package ‘AzureKeyVault’ ... ** this is package ‘AzureKeyVault’ version ‘1.0.6’ ** package ‘AzureKeyVault’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AzureKeyVault) begin installing package ‘EML’ * installing *source* package ‘geosapi’ ... ** this is package ‘geosapi’ version ‘0.8’ ** package ‘geosapi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geosapi) begin installing package ‘ozmaps’ * installing *source* package ‘AzureTableStor’ ... ** this is package ‘AzureTableStor’ version ‘1.0.0’ ** package ‘AzureTableStor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AzureTableStor) begin installing package ‘datapack’ * installing *source* package ‘ReDaMoR’ ... ** this is package ‘ReDaMoR’ version ‘0.8.2’ ** package ‘ReDaMoR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ReDaMoR) begin installing package ‘reader’ * installing *source* package ‘torchvision’ ... ** this is package ‘torchvision’ version ‘0.8.0’ ** package ‘torchvision’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (torchvision) begin installing package ‘usmap’ * installing *source* package ‘IRkernel’ ... ** this is package ‘IRkernel’ version ‘1.3.2’ ** package ‘IRkernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRkernel) begin installing package ‘taxadb’ * installing *source* package ‘ulid’ ... ** this is package ‘ulid’ version ‘0.4.0’ ** package ‘ulid’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmZFoF0/R.INSTALL6ae164b94a7f5/ulid/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper.cpp -o wrapper.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ulid.so RcppExports.o wrapper.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmZFoF0/R.INSTALL6ae164b94a7f5/ulid/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ulid/00new/ulid/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ulid) begin installing package ‘doconv’ * installing *source* package ‘reader’ ... ** this is package ‘reader’ version ‘1.0.6’ ** package ‘reader’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reader) begin installing package ‘equatags’ * installing *source* package ‘RcppMsgPack’ ... ** this is package ‘RcppMsgPack’ version ‘0.2.4’ ** package ‘RcppMsgPack’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1SUrzB/R.INSTALL69ef47b7365a4/RcppMsgPack/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c example1.cpp -o example1.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c example2.cpp -o example2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcppmsgpack_c_functions.cpp -o rcppmsgpack_c_functions.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/variant/variant_fwd.hpp:19, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/variant/variant.hpp:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/variant.hpp:17, from anyvector.h:3, from rcppmsgpack_c_functions.cpp:3: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RcppMsgPack.so RcppExports.o example1.o example2.o rcppmsgpack_c_functions.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1SUrzB/R.INSTALL69ef47b7365a4/RcppMsgPack/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RcppMsgPack/00new/RcppMsgPack/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppMsgPack) begin installing package ‘officedown’ * installing *source* package ‘usmap’ ... ** this is package ‘usmap’ version ‘1.0.0’ ** package ‘usmap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usmap) begin installing package ‘metalite.ae’ * installing *source* package ‘EML’ ... ** this is package ‘EML’ version ‘2.0.7’ ** package ‘EML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EML) begin installing package ‘blastula’ * installing *source* package ‘freesurferformats’ ... ** this is package ‘freesurferformats’ version ‘1.0.0’ ** package ‘freesurferformats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freesurferformats) begin installing package ‘ecr’ * installing *source* package ‘doconv’ ... ** this is package ‘doconv’ version ‘0.3.3’ ** package ‘doconv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doconv) begin installing package ‘rush’ * installing *source* package ‘equatags’ ... ** this is package ‘equatags’ version ‘0.2.2’ ** package ‘equatags’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (equatags) begin installing package ‘pmxTools’ * installing *source* package ‘blastula’ ... ** this is package ‘blastula’ version ‘0.3.6’ ** package ‘blastula’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (blastula) begin installing package ‘argonDash’ * installing *source* package ‘ozmaps’ ... ** this is package ‘ozmaps’ version ‘0.4.5’ ** package ‘ozmaps’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ozmaps) begin installing package ‘filearray’ * installing *source* package ‘metalite.ae’ ... ** this is package ‘metalite.ae’ version ‘0.1.3’ ** package ‘metalite.ae’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metalite.ae) begin installing package ‘taxalight’ * installing *source* package ‘Rserve’ ... ** this is package ‘Rserve’ version ‘1.8-16’ ** package ‘Rserve’ successfully unpacked and MD5 sums checked ** using staged installation checking whether to compile the server... yes checking whether to compile the client... no checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for sys/wait.h that is POSIX.1 compatible... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for limits.h... yes checking for string.h... (cached) yes checking for memory.h... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/socket.h... yes checking for sys/un.h... yes checking for netinet/in.h... yes checking for netinet/tcp.h... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking size of size_t... 8 checking for pid_t... yes checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking return type of signal handlers... void checking for memset... yes checking for mkdir... yes checking for rmdir... yes checking for select... yes checking for socket... yes checking for srandomdev... no checking for library containing crypt... -lcrypt checking for crypt.h... yes checking for socklen_t... yes checking for connect... yes checking whether to enable IPv6... no checking for dlopen in -ldl... yes checking for openssl/rsa.h... yes checking for library containing RSA_generate_key... -lcrypto checking for openssl/ssl.h... yes checking for library containing SSL_CTX_load_verify_locations... -lssl checking whether threads are desired... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking if compiler needs -Werror to reject unknown flags... no checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for working threads support... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/client/cxx/Makefile config.status: creating src/config.h ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcO4UbF/R.INSTALL69b9aa7d82ae/Rserve/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RSserver.c -o RSserver.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rserv.c -o Rserv.o Rserv.c: In function ‘auth_user’: Rserv.c:2447:21: warning: variable ‘ctrl_flag’ set but not used [-Wunused-but-set-variable] 2447 | int ctrl_flag = 0, u_uid = 0, u_gid = 0; | ^~~~~~~~~ Rserv.c: In function ‘Rserve_fork_compute’: Rserv.c:3312:25: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3312 | int rn, cmd; | ^~~ Rserv.c: In function ‘OCAP_iteration’: Rserv.c:3468:29: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3468 | int cmd; | ^~~ Rserv.c: In function ‘Rserve_QAP1_connected’: Rserv.c:3915:9: warning: variable ‘unaligned’ set but not used [-Wunused-but-set-variable] 3915 | int unaligned=0; | ^~~~~~~~~ Rserv.c: In function ‘handle_server_event’: Rserv.c:5030:13: warning: unused variable ‘succ’ [-Wunused-variable] 5030 | int succ = 0; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c date.c -o date.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c http.c -o http.o In file included from http.c:10: bsdcmpt.h:17:20: warning: ‘strnstr’ defined but not used [-Wunused-function] 17 | static const char *strnstr(const char *haystack, const char *needle, size_t len) { | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ioc.c -o ioc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c md5.c -o md5.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c oc.c -o oc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qap_decode.c -o qap_decode.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qap_encode.c -o qap_encode.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c session.c -o session.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha1.c -o sha1.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standalone.c -o standalone.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tls.c -o tls.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ulog.c -o ulog.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c websockets.c -o websockets.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winembed.c -o winembed.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rserve.so RSserver.o Rserv.o base64.o date.o http.o ioc.o md5.o oc.o qap_decode.o qap_encode.o session.o sha1.o standalone.o tls.o ulog.o utils.o websockets.o winembed.o -lssl -lcrypto -ldl -lcrypt -L/home/hornik/tmp/R/lib -lR gcc-15 -DSTANDALONE_RSERVE -DDAEMON -I. -Iinclude -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/home/hornik/tmp/R/include -o Rserve standalone.c md5.c session.c qap_decode.c qap_encode.c sha1.c base64.c websockets.c RSserver.c tls.c http.c oc.c ulog.c ioc.c utils.c date.c -Wl,-O1 -lssl -lcrypto -ldl -lcrypt -L"/home/hornik/tmp/R/lib" -lR -lssl -lcrypto -ldl -lcrypt In file included from standalone.c:6: Rserv.c: In function ‘auth_user’: Rserv.c:2447:21: warning: variable ‘ctrl_flag’ set but not used [-Wunused-but-set-variable] 2447 | int ctrl_flag = 0, u_uid = 0, u_gid = 0; | ^~~~~~~~~ Rserv.c: In function ‘Rserve_fork_compute’: Rserv.c:3312:25: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3312 | int rn, cmd; | ^~~ Rserv.c: In function ‘OCAP_iteration’: Rserv.c:3468:29: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3468 | int cmd; | ^~~ Rserv.c: In function ‘Rserve_QAP1_connected’: Rserv.c:3915:9: warning: variable ‘unaligned’ set but not used [-Wunused-but-set-variable] 3915 | int unaligned=0; | ^~~~~~~~~ Rserv.c: In function ‘handle_server_event’: Rserv.c:5030:13: warning: unused variable ‘succ’ [-Wunused-variable] 5030 | int succ = 0; | ^~~~ In file included from http.c:10: bsdcmpt.h:17:20: warning: ‘strnstr’ defined but not used [-Wunused-function] 17 | static const char *strnstr(const char *haystack, const char *needle, size_t len) { | ^~~~~~~ gcc-15 -DSTANDALONE_RSERVE -DRSERV_DEBUG -DNODAEMON -I. -Iinclude -I"/home/hornik/tmp/R/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/home/hornik/tmp/R/include -o Rserve.dbg standalone.c md5.c session.c qap_decode.c qap_encode.c sha1.c base64.c websockets.c RSserver.c tls.c http.c oc.c ulog.c ioc.c utils.c date.c -Wl,-O1 -lssl -lcrypto -ldl -lcrypt -L"/home/hornik/tmp/R/lib" -lR -lssl -lcrypto -ldl -lcrypt In file included from standalone.c:6: Rserv.c: In function ‘auth_user’: Rserv.c:2447:21: warning: variable ‘ctrl_flag’ set but not used [-Wunused-but-set-variable] 2447 | int ctrl_flag = 0, u_uid = 0, u_gid = 0; | ^~~~~~~~~ Rserv.c: In function ‘Rserve_fork_compute’: Rserv.c:3312:25: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3312 | int rn, cmd; | ^~~ Rserv.c: In function ‘OCAP_iteration’: Rserv.c:3468:29: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3468 | int cmd; | ^~~ Rserv.c: In function ‘Rserve_QAP1_connected’: Rserv.c:3915:9: warning: variable ‘unaligned’ set but not used [-Wunused-but-set-variable] 3915 | int unaligned=0; | ^~~~~~~~~ Rserv.c: In function ‘handle_server_event’: Rserv.c:5030:13: warning: unused variable ‘succ’ [-Wunused-variable] 5030 | int succ = 0; | ^~~~ standalone.c: In function ‘main’: standalone.c:38:16: warning: variable ‘rs_silent’ set but not used [-Wunused-but-set-variable] 38 | int rs_silent = 0; | ^~~~~~~~~ In file included from http.c:10: bsdcmpt.h:17:20: warning: ‘strnstr’ defined but not used [-Wunused-function] 17 | static const char *strnstr(const char *haystack, const char *needle, size_t len) { | ^~~~~~~ ./mergefat Rserve "/home/hornik/tmp/R/bin/Rserve" ./mergefat Rserve.dbg "/home/hornik/tmp/R/bin/Rserve.dbg" make -C proxy 'CC=gcc-15' 'CPPFLAGS=-I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include ' CFLAGS='-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native ' 'LDFLAGS=-Wl,-O1' 'LIBS=-lssl -lcrypto -ldl -lcrypt ' && cp -p proxy/forward . make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpcO4UbF/R.INSTALL69b9aa7d82ae/Rserve/src/proxy' ln -sfn ../ulog.h ulog.h gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o forward.o forward.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o http.o http.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o http_tools.o http_tools.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o server.o server.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o tls.o tls.c ln -sfn ../md5.h md5.h ln -sfn ../sha1.h sha1.h ln -sfn ../base64.c base64.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o websockets.o websockets.c websockets.c: In function ‘WS_connected’: websockets.c:343:47: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 343 | ws_connected_fn_t connected = (ws_connected_fn_t) arg->srv->aux; | ^ websockets.c: In function ‘WS13_upgrade’: websockets.c:378:34: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 378 | srv->aux = (void*) connected; | ^ websockets.c:411:47: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 411 | ws_connected_fn_t connected = (ws_connected_fn_t) srv->aux; | ^ websockets.c: In function ‘create_WS_server’: websockets.c:868:34: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 868 | srv->aux = (void*) connected; | ^ ln -sfn ../md5.c md5.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o md5.o md5.c ln -sfn ../sha1.c sha1.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o sha1.o sha1.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o base64.o base64.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o date.o date.c ln -sfn ../ulog.c ulog.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o ulog.o ulog.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o chandler.o chandler.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o rscript.o rscript.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 -o forward forward.o http.o http_tools.o server.o tls.o websockets.o md5.o sha1.o base64.o date.o ulog.o chandler.o rscript.o -lssl -lcrypto -ldl -lcrypt make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpcO4UbF/R.INSTALL69b9aa7d82ae/Rserve/src/proxy' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcO4UbF/R.INSTALL69b9aa7d82ae/Rserve/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rserve/00new/Rserve ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rserve) begin installing package ‘BED’ * installing *source* package ‘datapack’ ... ** this is package ‘datapack’ version ‘1.4.2’ ** package ‘datapack’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (datapack) begin installing package ‘RestRserve’ * installing *source* package ‘officedown’ ... ** this is package ‘officedown’ version ‘0.4.1’ ** package ‘officedown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (officedown) * installing *source* package ‘taxadb’ ... ** this is package ‘taxadb’ version ‘0.2.1’ ** package ‘taxadb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (taxadb) begin installing package ‘dataone’ begin installing package ‘rpymat’ * installing *source* package ‘argonDash’ ... ** this is package ‘argonDash’ version ‘0.2.5’ ** package ‘argonDash’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (argonDash) begin installing package ‘mlr3db’ * installing *source* package ‘qrencoder’ ... ** this is package ‘qrencoder’ version ‘0.1.0’ ** package ‘qrencoder’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBdPzqy/R.INSTALL696577c14dec9/qrencoder/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bitstream.c -o bitstream.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mask.c -o mask.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mmask.c -o mmask.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mqrspec.c -o mqrspec.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qrenc.c -o qrenc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qrencode.c -o qrencode.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c qrencoder.cpp -o qrencoder.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qrinput.c -o qrinput.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qrspec.c -o qrspec.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rsecc.c -o rsecc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c split.c -o split.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o qrencoder.so RcppExports.o bitstream.o mask.o mmask.o mqrspec.o qrenc.o qrencode.o qrencoder.o qrinput.o qrspec.o rsecc.o split.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBdPzqy/R.INSTALL696577c14dec9/qrencoder/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-qrencoder/00new/qrencoder/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qrencoder) * installing *source* package ‘taxalight’ ... ** this is package ‘taxalight’ version ‘0.1.5’ ** package ‘taxalight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (taxalight) * installing *source* package ‘rush’ ... ** this is package ‘rush’ version ‘0.4.1’ ** package ‘rush’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rush) * installing *source* package ‘rpymat’ ... ** this is package ‘rpymat’ version ‘0.1.8’ ** package ‘rpymat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpymat) begin installing package ‘rpyANTs’ * installing *source* package ‘clhs’ ... ** this is package ‘clhs’ version ‘0.9.2’ ** package ‘clhs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWdHZ5b/R.INSTALL683f3200b0f47/clhs/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c CppLHS.cpp -o CppLHS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o clhs.so CppLHS.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWdHZ5b/R.INSTALL683f3200b0f47/clhs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-clhs/00new/clhs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clhs) * installing *source* package ‘mlr3db’ ... ** this is package ‘mlr3db’ version ‘0.7.0’ ** package ‘mlr3db’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3db) * installing *source* package ‘dipsaus’ ... ** this is package ‘dipsaus’ version ‘0.3.3’ ** package ‘dipsaus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpITGLjy/R.INSTALL6967a72b2be19/dipsaus/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c forelse.cpp -o forelse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_arrayShift.cpp -o rcpp_arrayShift.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_baselineArray.cpp -o rcpp_baselineArray.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_collapse.cpp -o rcpp_collapse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_fastCov.cpp -o rcpp_fastCov.o rcpp_fastCov.cpp: In member function ‘virtual void FastCov::operator()(std::size_t, std::size_t)’: rcpp_fastCov.cpp:47:24: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 47 | for(jj = begin; jj < end; jj++, pt_cm2++){ | ~~~^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_median.cpp -o rcpp_median.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dipsaus.so RcppExports.o forelse.o rcpp_arrayShift.o rcpp_baselineArray.o rcpp_collapse.o rcpp_fastCov.o rcpp_median.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpITGLjy/R.INSTALL6967a72b2be19/dipsaus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dipsaus/00new/dipsaus/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dipsaus) begin installing package ‘threeBrain’ * installing *source* package ‘atom4R’ ... ** this is package ‘atom4R’ version ‘0.3-4’ ** package ‘atom4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (atom4R) * installing *source* package ‘dataone’ ... ** this is package ‘dataone’ version ‘2.3.0’ ** package ‘dataone’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dataone) * installing *source* package ‘pmxTools’ ... ** this is package ‘pmxTools’ version ‘1.5’ ** package ‘pmxTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pmxTools) * installing *source* package ‘BED’ ... ** this is package ‘BED’ version ‘1.6.2’ ** package ‘BED’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRoY6IP/R.INSTALL6b4ae2613e625/BED/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extract_u_de.c -o extract_u_de.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extract_u_gn.c -o extract_u_gn.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BED.so extract_u_de.o extract_u_gn.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRoY6IP/R.INSTALL6b4ae2613e625/BED/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BED/00new/BED/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BED) * installing *source* package ‘gt’ ... ** this is package ‘gt’ version ‘1.3.0’ ** package ‘gt’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gt) * installing *source* package ‘rpyANTs’ ... ** this is package ‘rpyANTs’ version ‘0.0.6’ ** package ‘rpyANTs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpyANTs) * installing *source* package ‘ecr’ ... ** this is package ‘ecr’ version ‘2.1.1’ ** package ‘ecr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphUvHBn/R.INSTALL6b2e455bdbb34/ecr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DVARIANT=4 -c -o avl.o avl.c gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c computeHypervolume.c -o computeHypervolume.o In file included from computeHypervolume.c:4: computeHypervolume.c: In function ‘computeHVC’: computeHypervolume.c:18:52: warning: unused variable ‘len_ref’ [-Wunused-variable] 18 | EXTRACT_NUMERIC_VECTOR(r_ref_point, c_ref_point, len_ref); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ computeHypervolume.c: In function ‘computeHVContributionC’: computeHypervolume.c:44:52: warning: unused variable ‘n_ref_point’ [-Wunused-variable] 44 | EXTRACT_NUMERIC_VECTOR(r_ref_point, c_ref_point, n_ref_point); | ^~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crowdingDistance.c -o crowdingDistance.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dominance.c -o dominance.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c emoa.indicators.cpp -o emoa.indicators.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eps_ind.c -o eps_ind.o In file included from eps_ind.c:38: eps_ind.c: In function ‘emoaIndEpsC’: eps_ind.c:112:52: warning: unused variable ‘n_ref_objectives’ [-Wunused-variable] 112 | EXTRACT_NUMERIC_MATRIX(ref_points, c_ref_points, n_ref_objectives, n_ref_points); | ^~~~~~~~~~~~~~~~ macros.h:11:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 11 | const R_len_t N_ROW = nrows(S_EXP); \ | ^~~~~ eps_ind.c:64:16: warning: ‘eps_j’ may be used uninitialized [-Wmaybe-uninitialized] 64 | double eps, eps_j, eps_k, eps_temp; | ^~~~~ eps_ind.c:64:23: warning: ‘eps_k’ may be used uninitialized [-Wmaybe-uninitialized] 64 | double eps, eps_j, eps_k, eps_temp; | ^~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c helpers.c -o helpers.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DVARIANT=4 -c -o hv.o hv.c gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c polynomialMutation.c -o polynomialMutation.o In file included from polynomialMutation.c:4: polynomialMutation.c: In function ‘polynomialMutationC’: polynomialMutation.c:29:42: warning: unused variable ‘c_upper_length’ [-Wunused-variable] 29 | EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ polynomialMutation.c:28:42: warning: unused variable ‘c_lower_length’ [-Wunused-variable] 28 | EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_ind.c -o r_ind.o In file included from r_ind.c:35: r_ind.c: In function ‘do_unary_r2_ind’: r_ind.c:197:44: warning: unused variable ‘n_ideal’ [-Wunused-variable] 197 | EXTRACT_NUMERIC_VECTOR(s_ideal, ideal, n_ideal); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ r_ind.c:196:48: warning: unused variable ‘k_weights’ [-Wunused-variable] 196 | EXTRACT_NUMERIC_MATRIX(s_weights, weights, k_weights, n_weights); | ^~~~~~~~~ macros.h:11:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 11 | const R_len_t N_ROW = nrows(S_EXP); \ | ^~~~~ r_ind.c: In function ‘computeRIndicatorC’: r_ind.c:242:44: warning: unused variable ‘n_nadir’ [-Wunused-variable] 242 | EXTRACT_NUMERIC_VECTOR(s_nadir, nadir, n_nadir); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ r_ind.c:241:44: warning: unused variable ‘n_ideal’ [-Wunused-variable] 241 | EXTRACT_NUMERIC_VECTOR(s_ideal, ideal, n_ideal); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simulatedBinaryCrossover.c -o simulatedBinaryCrossover.o In file included from simulatedBinaryCrossover.c:4: simulatedBinaryCrossover.c: In function ‘simulatedBinaryCrossoverC’: simulatedBinaryCrossover.c:50:42: warning: unused variable ‘c_upper_length’ [-Wunused-variable] 50 | EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ simulatedBinaryCrossover.c:49:42: warning: unused variable ‘c_lower_length’ [-Wunused-variable] 49 | EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ simulatedBinaryCrossover.c:46:49: warning: unused variable ‘n’ [-Wunused-variable] 46 | EXTRACT_NUMERIC_MATRIX(parents, c_parents, d, n); | ^ macros.h:12:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 12 | const R_len_t N_COL = ncols(S_EXP); | ^~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ecr.so RcppExports.o avl.o computeHypervolume.o crowdingDistance.o dominance.o emoa.indicators.o eps_ind.o helpers.o hv.o polynomialMutation.o r_ind.o simulatedBinaryCrossover.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphUvHBn/R.INSTALL6b2e455bdbb34/ecr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ecr/00new/ecr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ecr) * installing *source* package ‘paws.customer.engagement’ ... ** this is package ‘paws.customer.engagement’ version ‘0.9.0’ ** package ‘paws.customer.engagement’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.customer.engagement) * installing *source* package ‘paws.developer.tools’ ... ** this is package ‘paws.developer.tools’ version ‘0.9.0’ ** package ‘paws.developer.tools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.developer.tools) * installing *source* package ‘paws.networking’ ... ** this is package ‘paws.networking’ version ‘0.9.0’ ** package ‘paws.networking’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.networking) * installing *source* package ‘threeBrain’ ... ** this is package ‘threeBrain’ version ‘1.2.0’ ** package ‘threeBrain’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (threeBrain) * installing *source* package ‘paws.database’ ... ** this is package ‘paws.database’ version ‘0.9.0’ ** package ‘paws.database’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.database) * installing *source* package ‘RestRserve’ ... ** this is package ‘RestRserve’ version ‘1.2.4’ ** package ‘RestRserve’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE9KRL1/R.INSTALL6b4c753780493/RestRserve/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c format_cookies.cpp -o format_cookies.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c format_headers.cpp -o format_headers.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c parse_cookies.cpp -o parse_cookies.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c parse_headers.cpp -o parse_headers.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c parse_multipart.cpp -o parse_multipart.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c url_decode.cpp -o url_decode.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c url_encode.cpp -o url_encode.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RestRserve.so RcppExports.o format_cookies.o format_headers.o parse_cookies.o parse_headers.o parse_multipart.o url_decode.o url_encode.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE9KRL1/R.INSTALL6b4c753780493/RestRserve/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RestRserve/00new/RestRserve/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RestRserve) * installing *source* package ‘filearray’ ... ** this is package ‘filearray’ version ‘0.2.0’ ** package ‘filearray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDfMKk1/R.INSTALL6b4486a930173/filearray/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c collapse.cpp -o collapse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c conversion.cpp -o conversion.o conversion.cpp: In function ‘SEXPREC* convert_as2(SEXP, SEXP, SEXPTYPE)’: conversion.cpp:293:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare] 293 | if( TYPEOF(y) != type ){ | ~~~~~~~~~~^~~~~~~ conversion.cpp: In function ‘void realToFloat(double*, float*, size_t)’: conversion.cpp:405:29: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 405 | for(R_xlen_t ii = 0; ii < nelem; ii++, x++, y++){ | ~~~^~~~~~~ conversion.cpp: In function ‘void floatToReal(float*, double*, size_t)’: conversion.cpp:415:29: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 415 | for(R_xlen_t ii = 0; ii < nelem; ii++, y++, x++){ | ~~~^~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core.cpp -o core.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interfaces.cpp -o interfaces.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c load.cpp -o load.o load.cpp: In function ‘SEXPREC* FARR_subset_sequential(const std::string&, const int64_t&, SEXP, SEXPTYPE, SEXP, int64_t, int64_t)’: load.cpp:66:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare] 66 | if( TYPEOF(ret) != array_memory_sxptype(array_type) ){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c map.cpp -o map.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mapreduce.cpp -o mapreduce.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c save.cpp -o save.o save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = unsigned char; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = float; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = double; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = int; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c serialize.cpp -o serialize.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c threadSettings.cpp -o threadSettings.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o utils.cpp: In function ‘void set_buffer(SEXP, int, size_t, int)’: utils.cpp:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 42 | if( buf_bytes > buffer_bytes ){ | ~~~~~~~~~~^~~~~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o filearray.so RcppExports.o collapse.o conversion.o core.o interfaces.o load.o map.o mapreduce.o save.o serialize.o threadSettings.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDfMKk1/R.INSTALL6b4486a930173/filearray/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-filearray/00new/filearray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filearray) begin installing package ‘ieegio’ * installing *source* package ‘ipaddress’ ... ** this is package ‘ipaddress’ version ‘1.0.3’ ** package ‘ipaddress’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwtlkYu/R.INSTALL6a7b325a9fd7e/ipaddress/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c address_ranges.cpp -o address_ranges.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c ip_address.cpp -o ip_address.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c ip_network.cpp -o ip_network.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c ip_to_binary.cpp -o ip_to_binary.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c ip_to_bytes.cpp -o ip_to_bytes.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c ip_to_hex.cpp -o ip_to_hex.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c ip_to_hostname.cpp -o ip_to_hostname.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c masking.cpp -o masking.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c networks.cpp -o networks.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c operators.cpp -o operators.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c reserved.cpp -o reserved.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c reverse_pointer.cpp -o reverse_pointer.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c sample.cpp -o sample.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -DASIO_STANDALONE -DASIO_NO_DEPRECATED -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/AsioHeaders/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D_LIBCPP_DISABLE_DEPRECATION_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c sequence.cpp -o sequence.o sequence.cpp: In function ‘Rcpp::List wrap_subnets(Rcpp::List, Rcpp::IntegerVector)’: sequence.cpp:108:25: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | if (new_prefix.size() != vsize) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ipaddress.so RcppExports.o address_ranges.o ip_address.o ip_network.o ip_to_binary.o ip_to_bytes.o ip_to_hex.o ip_to_hostname.o masking.o networks.o operators.o reserved.o reverse_pointer.o sample.o sequence.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwtlkYu/R.INSTALL6a7b325a9fd7e/ipaddress/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ipaddress/00new/ipaddress/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ipaddress) * installing *source* package ‘RClickhouse’ ... ** this is package ‘RClickhouse’ version ‘0.6.10’ ** package ‘RClickhouse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE8RzYL/R.INSTALL6ab2860c69c0/RClickhouse/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RClickhouse_init.c -o RClickhouse_init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c connection.cpp -o connection.o connection.cpp: In instantiation of ‘std::shared_ptr<_Tp> vecToEnum(SEXP, clickhouse::TypeRef, std::shared_ptr >) [with CT = clickhouse::ColumnEnum; VT = signed char; SEXP = SEXPREC*; clickhouse::TypeRef = std::shared_ptr]’: connection.cpp:399:44: required from here 399 | return vecToEnum(v, t, nullCol); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ connection.cpp:311:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 311 | for (size_t i = 0; i < levels.size(); i++) { | ~~^~~~~~~~~~~~~~~ connection.cpp: In instantiation of ‘std::shared_ptr<_Tp> vecToEnum(SEXP, clickhouse::TypeRef, std::shared_ptr >) [with CT = clickhouse::ColumnEnum; VT = short int; SEXP = SEXPREC*; clickhouse::TypeRef = std::shared_ptr]’: connection.cpp:401:46: required from here 401 | return vecToEnum(v, t, nullCol); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ connection.cpp:311:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 311 | for (size_t i = 0; i < levels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c result.cpp -o result.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/string.cpp -o vendor/clickhouse-cpp/clickhouse/columns/string.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/date.cpp -o vendor/clickhouse-cpp/clickhouse/columns/date.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/numeric.cpp -o vendor/clickhouse-cpp/clickhouse/columns/numeric.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/decimal.cpp -o vendor/clickhouse-cpp/clickhouse/columns/decimal.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/tuple.cpp -o vendor/clickhouse-cpp/clickhouse/columns/tuple.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/array.cpp -o vendor/clickhouse-cpp/clickhouse/columns/array.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/factory.cpp -o vendor/clickhouse-cpp/clickhouse/columns/factory.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/nullable.cpp -o vendor/clickhouse-cpp/clickhouse/columns/nullable.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/enum.cpp -o vendor/clickhouse-cpp/clickhouse/columns/enum.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/uuid.cpp -o vendor/clickhouse-cpp/clickhouse/columns/uuid.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/ip4.cpp -o vendor/clickhouse-cpp/clickhouse/columns/ip4.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/ip6.cpp -o vendor/clickhouse-cpp/clickhouse/columns/ip6.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/query.cpp -o vendor/clickhouse-cpp/clickhouse/query.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/platform.cpp -o vendor/clickhouse-cpp/clickhouse/base/platform.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/socket.cpp -o vendor/clickhouse-cpp/clickhouse/base/socket.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/input.cpp -o vendor/clickhouse-cpp/clickhouse/base/input.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/output.cpp -o vendor/clickhouse-cpp/clickhouse/base/output.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/coded.cpp -o vendor/clickhouse-cpp/clickhouse/base/coded.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/compressed.cpp -o vendor/clickhouse-cpp/clickhouse/base/compressed.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/client.cpp -o vendor/clickhouse-cpp/clickhouse/client.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/types/types.cpp -o vendor/clickhouse-cpp/clickhouse/types/types.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/types/type_parser.cpp -o vendor/clickhouse-cpp/clickhouse/types/type_parser.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/block.cpp -o vendor/clickhouse-cpp/clickhouse/block.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/contrib/cityhash/city.cc -o vendor/clickhouse-cpp/contrib/cityhash/city.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vendor/clickhouse-cpp/contrib/lz4/lz4.c -o vendor/clickhouse-cpp/contrib/lz4/lz4.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vendor/clickhouse-cpp/contrib/lz4/lz4hc.c -o vendor/clickhouse-cpp/contrib/lz4/lz4hc.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RClickhouse.so RClickhouse_init.o RcppExports.o connection.o result.o vendor/clickhouse-cpp/clickhouse/columns/string.o vendor/clickhouse-cpp/clickhouse/columns/date.o vendor/clickhouse-cpp/clickhouse/columns/numeric.o vendor/clickhouse-cpp/clickhouse/columns/decimal.o vendor/clickhouse-cpp/clickhouse/columns/tuple.o vendor/clickhouse-cpp/clickhouse/columns/array.o vendor/clickhouse-cpp/clickhouse/columns/factory.o vendor/clickhouse-cpp/clickhouse/columns/nullable.o vendor/clickhouse-cpp/clickhouse/columns/enum.o vendor/clickhouse-cpp/clickhouse/columns/uuid.o vendor/clickhouse-cpp/clickhouse/columns/ip4.o vendor/clickhouse-cpp/clickhouse/columns/ip6.o vendor/clickhouse-cpp/clickhouse/query.o vendor/clickhouse-cpp/clickhouse/base/platform.o vendor/clickhouse-cpp/clickhouse/base/socket.o vendor/clickhouse-cpp/clickhouse/base/input.o vendor/clickhouse-cpp/clickhouse/base/output.o vendor/clickhouse-cpp/clickhouse/base/coded.o vendor/clickhouse-cpp/clickhouse/base/compressed.o vendor/clickhouse-cpp/clickhouse/client.o vendor/clickhouse-cpp/clickhouse/types/types.o vendor/clickhouse-cpp/clickhouse/types/type_parser.o vendor/clickhouse-cpp/clickhouse/block.o vendor/clickhouse-cpp/contrib/cityhash/city.o vendor/clickhouse-cpp/contrib/lz4/lz4.o vendor/clickhouse-cpp/contrib/lz4/lz4hc.o -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE8RzYL/R.INSTALL6ab2860c69c0/RClickhouse/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RClickhouse/00new/RClickhouse/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RClickhouse) * installing *source* package ‘ieegio’ ... ** this is package ‘ieegio’ version ‘0.0.8’ ** package ‘ieegio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ieegio) * installing *source* package ‘paws.security.identity’ ... ** this is package ‘paws.security.identity’ version ‘0.9.0’ ** package ‘paws.security.identity’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.security.identity) * installing *source* package ‘paws.management’ ... ** this is package ‘paws.management’ version ‘0.9.0’ ** package ‘paws.management’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.management) * installing *source* package ‘paws.compute’ ... ** this is package ‘paws.compute’ version ‘0.9.0’ ** package ‘paws.compute’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.compute) * installing *source* package ‘paws.machine.learning’ ... ** this is package ‘paws.machine.learning’ version ‘0.9.0’ ** package ‘paws.machine.learning’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.machine.learning) * installing *source* package ‘geometa’ ... ** this is package ‘geometa’ version ‘0.9.3’ ** package ‘geometa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘coerce’ with signature ‘"emld","ISOMetadata"’: no definition for class “ISOMetadata” in method for ‘coerce’ with signature ‘"ncdf4","ISOMetadata"’: no definition for class “ISOMetadata” in method for ‘coerce’ with signature ‘"ncdf4","ISOImageryMetadata"’: no definition for class “ISOImageryMetadata” in method for ‘coerce’ with signature ‘"ISOMetadata","emld"’: no definition for class “ISOMetadata” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geometa) begin installing package ‘geonapi’ begin installing package ‘ows4R’ * installing *source* package ‘geonapi’ ... ** this is package ‘geonapi’ version ‘0.8-1’ ** package ‘geonapi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geonapi) * installing *source* package ‘ows4R’ ... ** this is package ‘ows4R’ version ‘0.5’ ** package ‘ows4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ows4R) * installing *source* package ‘RTMB’ ... ** this is package ‘RTMB’ version ‘1.8’ ** package ‘RTMB’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZVqIAO/R.INSTALL691133e0d93f6/RTMB/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RTMB.cpp -o RTMB.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RTMB_tape.cpp -o RTMB_tape.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TMB.cpp -o TMB.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:137, from TMB.h:38, from TMB.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMBad/TMBad.cpp: In function ‘TMBad::ad_adapt TMBad::F(const ad_adapt&, const ad_adapt&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMBad/TMBad.cpp:3110:10: warning: infinite recursion detected [-Winfinite-recursion] 3110 | ad_adapt F(const ad_adapt &x1, const ad_adapt &x2) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMBad/TMBad.cpp:3111:20: note: recursive call 3111 | return ad_adapt(F(ad_aug(x1), ad_aug(x2))); | ~^~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bessel.cpp -o bessel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distributions.cpp -o distributions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c expAv.cpp -o expAv.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interpol.cpp -o interpol.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lapack.cpp -o lapack.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c math.cpp -o math.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c math_complex.cpp -o math_complex.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c misc.cpp -o misc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c poshess.cpp -o poshess.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c subset.cpp -o subset.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RTMB.so RTMB.o RTMB_tape.o RcppExports.o TMB.o bessel.o distributions.o expAv.o interpol.o lapack.o math.o math_complex.o misc.o poshess.o subset.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZVqIAO/R.INSTALL691133e0d93f6/RTMB/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RTMB/00new/RTMB/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘fft’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselK’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselI’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselJ’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselY’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘dexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘df’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dt’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dnbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘lbeta’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘eigen’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘svd’ from ‘base’ in package ‘RTMB’ (from the saved implicit definition) Creating a generic function for ‘svd’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dlnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘matrix’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘apply’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘sapply’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dmultinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dcauchy’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pnbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘findInterval’ from package ‘base’ in package ‘RTMB’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTMB) * installing *source* package ‘paws.analytics’ ... ** this is package ‘paws.analytics’ version ‘0.9.0’ ** package ‘paws.analytics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.analytics) begin installing package ‘paws’ * installing *source* package ‘paws’ ... ** this is package ‘paws’ version ‘0.9.0’ ** package ‘paws’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws) checking uuid_1.2-2.tar.gz ... checking AzureCosmosR_1.0.0.tar.gz ... checking AzureRMR_2.4.5.tar.gz ... checking AzureTableStor_1.0.0.tar.gz ... checking biblioverlap_1.0.2.tar.gz ... checking bidsr_0.1.1.tar.gz ... checking bigmemory_4.6.4.tar.gz ... checking bigReg_0.1.5.tar.gz ... checking biocompute_1.1.1.tar.gz ... checking blastula_0.3.6.tar.gz ... checking boxly_0.1.1.tar.gz ... checking bpmnR_0.1.1.tar.gz ... checking camtrapdp_0.5.0.tar.gz ... checking conditionz_0.1.0.tar.gz ... checking connectapi_0.10.0.tar.gz ... checking connections_0.2.1.tar.gz ... checking corella_0.1.4.tar.gz ... checking csdb_2025.7.30.tar.gz ... checking CytobankAPI_2.2.1.tar.gz ... checking dataone_2.3.0.tar.gz ... checking datapack_1.4.2.tar.gz ... checking delayed_0.5.0.tar.gz ... checking deliberr_0.1.0.tar.gz ... checking dgpsi_2.6.0.tar.gz ... checking duckspatial_0.9.0.tar.gz ... checking ecce_3.0.3.tar.gz ... checking ecocomDP_1.3.2.tar.gz ... checking editbl_1.3.0.tar.gz ... checking hmsr_1.0.1.tar.gz ... checking neotoma2_1.0.11.tar.gz ... checking FaaSr_1.4.4.tar.gz ... checking emuR_2.6.0.tar.gz ... checking EML_2.0.7.tar.gz ... checking fanyi_0.1.0.tar.gz ... checking EQUALencrypt_0.1.0.tar.gz ... checking IRkernel_1.3.2.tar.gz ... checking ggfigdone_0.1.2.tar.gz ... checking geoflow_1.1.0.tar.gz ... checking metalite.sl_0.1.1.tar.gz ... checking googledrive_2.1.2.tar.gz ... checking filearray_0.2.0.tar.gz ... checking forestly_0.1.3.tar.gz ... checking harmonydata_0.3.1.tar.gz ... checking myownrobs_1.0.0.tar.gz ... checking gittargets_0.0.7.tar.gz ... checking mlr3_1.3.0.tar.gz ... checking pii_1.3.0.tar.gz ... checking memofunc_1.0.2.tar.gz ... checking oppr_1.0.5.tar.gz ... checking mlr3hyperband_1.0.0.tar.gz ... checking RestRserve_1.2.4.tar.gz ... checking RNeXML_2.4.11.tar.gz ... checking nodbi_0.14.0.tar.gz ... checking mlr3batchmark_0.2.2.tar.gz ... checking reactRouter_0.1.1.tar.gz ... checking RAthena_2.6.3.tar.gz ... checking mini007_0.3.0.tar.gz ... checking ids_1.0.1.tar.gz ... checking PKbioanalysis_0.4.0.tar.gz ... checking mlr3oml_0.11.0.tar.gz ... checking flextable_0.9.10.tar.gz ... checking rPublic_1.0.0.tar.gz ... checking officedown_0.4.1.tar.gz ... checking villager_2.0.0.tar.gz ... checking sixtyfour_0.2.0.tar.gz ... checking RcppUUID_1.2.0.tar.gz ... checking shinyscreenshot_0.2.1.tar.gz ... checking RMixpanel_0.7-1.tar.gz ... checking rCoinbase_1.0.0.tar.gz ... checking ravepipeline_0.0.3.tar.gz ... checking rush_0.4.1.tar.gz ... checking sparklyr_1.9.3.tar.gz ... checking rotor_0.3.7.tar.gz ... checking sentryR_1.1.2.tar.gz ... checking shinyalert_3.1.0.tar.gz ... checking synchronicity_1.3.10.tar.gz ... checking putior_0.1.0.tar.gz ... checking renv_1.1.6.tar.gz ... checking noctua_2.6.3.tar.gz ... checking leafpop_0.1.0.tar.gz ... checking plnr_2025.11.22.tar.gz ... checking here_1.0.2.tar.gz ... checking vegdata_1.9.15.tar.gz ... checking PhilipsHue_1.0.0.tar.gz ... checking RobinHood_1.7.0.tar.gz ... checking AzureContainers_1.3.3.tar.gz ... checking RTD_0.4.2.tar.gz ... checking officer_0.7.3.tar.gz ... checking smdocker_0.1.4.tar.gz ... checking shiny.reglog_0.5.2.tar.gz ... checking plotscaper_0.2.8.tar.gz ... checking TKCat_1.1.14.tar.gz ... checking AzureStor_3.7.1.tar.gz ... checking xaringanExtra_0.8.0.tar.gz ... checking polished_0.8.1.tar.gz ... checking tigris_2.2.1.tar.gz ... checking envvar_0.1.2.tar.gz ... checking SeaSondeR_0.2.8.tar.gz ... checking qrlabelr_0.2.0.tar.gz ... checking gofigR_1.1.3.tar.gz ... Depends: Package: uuid Depends: R (>= 2.9.0) Timings: user system elapsed uuid 27.36 5.658 37.674 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 7 92 Check results summary: uuid ... OK rdepends_AzureContainers ... OK rdepends_AzureCosmosR ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_AzureRMR ... OK rdepends_AzureStor ... OK rdepends_AzureTableStor ... OK rdepends_biblioverlap ... OK rdepends_bidsr ... OK rdepends_bigmemory ... OK rdepends_bigReg ... OK rdepends_biocompute ... OK rdepends_blastula ... OK rdepends_boxly ... OK rdepends_bpmnR ... OK rdepends_camtrapdp ... OK rdepends_conditionz ... OK rdepends_connectapi ... OK rdepends_connections ... OK rdepends_corella ... OK rdepends_csdb ... OK rdepends_CytobankAPI ... OK rdepends_dataone ... OK rdepends_datapack ... OK rdepends_delayed ... OK rdepends_deliberr ... OK rdepends_dgpsi ... OK rdepends_duckspatial ... OK rdepends_ecce ... OK rdepends_ecocomDP ... OK rdepends_editbl ... OK rdepends_EML ... OK rdepends_emuR ... OK rdepends_envvar ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_EQUALencrypt ... OK rdepends_FaaSr ... OK rdepends_fanyi ... OK rdepends_filearray ... OK rdepends_flextable ... OK rdepends_forestly ... OK rdepends_geoflow ... OK rdepends_ggfigdone ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_gittargets ... OK rdepends_gofigR ... OK rdepends_googledrive ... OK rdepends_harmonydata ... OK rdepends_here ... OK rdepends_hmsr ... OK rdepends_ids ... OK rdepends_IRkernel ... OK rdepends_leafpop ... OK rdepends_memofunc ... OK rdepends_metalite.sl ... OK rdepends_mini007 ... OK rdepends_mlr3 ... OK rdepends_mlr3batchmark ... OK rdepends_mlr3hyperband ... OK rdepends_mlr3oml ... OK rdepends_myownrobs ... OK rdepends_neotoma2 ... OK rdepends_noctua ... OK rdepends_nodbi ... NOTE * checking Rd cross-references ... NOTE rdepends_officedown ... OK rdepends_officer ... OK rdepends_oppr ... OK rdepends_PhilipsHue ... OK rdepends_pii ... OK rdepends_PKbioanalysis ... OK rdepends_plnr ... OK rdepends_plotscaper ... OK rdepends_polished ... OK rdepends_putior ... OK rdepends_qrlabelr ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_RAthena ... OK rdepends_ravepipeline ... OK rdepends_rCoinbase ... OK rdepends_RcppUUID ... OK rdepends_reactRouter ... OK rdepends_renv ... OK rdepends_RestRserve ... OK rdepends_RMixpanel ... OK rdepends_RNeXML ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_RobinHood ... OK rdepends_rotor ... OK rdepends_rPublic ... OK rdepends_RTD ... OK rdepends_rush ... OK rdepends_SeaSondeR ... OK rdepends_sentryR ... OK rdepends_shiny.reglog ... OK rdepends_shinyalert ... OK rdepends_shinyscreenshot ... OK rdepends_sixtyfour ... OK rdepends_smdocker ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_sparklyr ... OK rdepends_synchronicity ... OK rdepends_tigris ... OK rdepends_TKCat ... OK rdepends_vegdata ... OK rdepends_villager ... OK rdepends_xaringanExtra ... OK Check results changes: Package: bigReg Check: CRAN incoming feasibility Old result: NOTE Package: conditionz Check: CRAN incoming feasibility Old result: NOTE Package: ids Check: CRAN incoming feasibility Old result: NOTE Package: memofunc Check: CRAN incoming feasibility Old result: NOTE Package: RestRserve Check: CRAN incoming feasibility Old result: NOTE Package: RobinHood Check: CRAN incoming feasibility Old result: NOTE Package: sixtyfour Check: DESCRIPTION meta-information Old result: NOTE New result: OK