* using log directory 'd:/RCompile/CRANincoming/R-devel/ultrapolaRplot.Rcheck'
* using R version 4.4.0 alpha (2024-03-26 r86209 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ultrapolaRplot/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ultrapolaRplot' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... WARNING
Maintainer: '<youtkin1@swarthmore.edu>'

The maintainer field lacks a name

New submission

Non-FOSS package license (Available under GPLv3.)

Possibly misspelled words in DESCRIPTION:
  SSANOVA (11:5)
  TextGrids (16:45)
  UltraTrace (14:42)
  textgrid (16:10)
  ultrapolaRplot (8:18, 13:15)

The Description field contains
  [UltraTrace](https:// github.com/SwatPhonLab/UltraTrace).  UltraTrace
Please enclose URLs in angle brackets (<...>).
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'ultrapolaRplot' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... WARNING
Non-standard license specification:
  Available under GPLv3.
Standardizable: FALSE
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
Non-standard file/directory found at top level:
  'ultrapolaRplot.Rproj'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' imports not declared from:
  'plyr' 'purrr' 'readr' 'stringr'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotTraces: warning in plotStyleTraces(matrixIntersection =
  matrixIntersection, compiledList = compiledList, dataOfEachCurve =
  dataOfEachCurveNNj, uniqueSegments = uniqueSegments, rayIncrement =
  rayIncrement, mean.lines = mean.lines, points.display =
  points.display, palette = palette, bands.lines = bands.lines,
  legend.position = legend.position, bands.fill = bands.fill,
  means.styles = means.styles, standard.deviation.styles =
  standard.deviation.styles, plot.ticks = plot.ticks, legend.size =
  legend.size, transparency = transparency, : partial argument match of
  'dataOfEachCurve' to 'dataOfEachCurveNNj'
plotTraces: warning in pdf.filename = pdf.filename, bands.linewidth =
  bands.linewidth, plot.labels = plot.labels, png.filename =
  png.filename, legend.linewidth = legend.linewidth, means.linewidth =
  means.linewidth, tick.size = tick.size): partial argument match of
  'dataOfEachCurve' to 'dataOfEachCurveNNj'
loadTraces: no visible binding for global variable 'xmin'
loadTraces: no visible binding for global variable 'xmax'
plotStyleTraces: no visible global function definition for 'sd'
plotStyleTraces: no visible global function definition for 'cairo_pdf'
plotStyleTraces: no visible global function definition for 'png'
plotStyleTraces: no visible global function definition for 'par'
plotStyleTraces: no visible global function definition for 'axis'
plotStyleTraces : <anonymous>: no visible global function definition
  for 'na.omit'
plotStyleTraces: no visible global function definition for 'lines'
plotStyleTraces: no visible global function definition for 'polygon'
plotStyleTraces: no visible global function definition for
  'adjustcolor'
plotStyleTraces: no visible global function definition for 'points'
plotStyleTraces: no visible global function definition for 'legend'
plotStyleTraces: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  adjustcolor axis cairo_pdf dev.off legend lines na.omit par png
  points polygon sd xmax xmin
Consider adding
  importFrom("grDevices", "adjustcolor", "cairo_pdf", "dev.off", "png")
  importFrom("graphics", "axis", "legend", "lines", "par", "points",
             "polygon")
  importFrom("stats", "na.omit", "sd")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'Summary_ultrapolaRplot.Rd':
  \usage lines wider than 90 characters:
     rawTraces <- loadTraces('/path/to/project/', 'vowels')  # project directory containing UltraTrace metadata file; tier to identify non-e ... [TRUNCATED]
  \examples lines wider than 100 characters:
     legend.position = "bottomright", points.display = FALSE, bands.lines = TRUE, bands.fill = TRUE, transparency = 0.2, mean.lines = TRUE,  ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'add_annotation_num' 'calculateIntersection2' 'example_textgrid'
  'find_intersection_with_ray' 'formating_data' 'get_field'
  'get_field_dbl' 'get_field_list' 'get_unique_segments'
  'identifyPlotBounds' 'identifyXAverage' 'loadTraces'
  'makeTracesPolar' 'parse_interval_tier' 'parse_item_lines'
  'parse_point_tier' 'parse_textgrid_lines' 'plotStyleTraces'
  'plotTraces' 'read_in_data' 'read_textgrid' 'read_textgrid_lines'
  'remove_na' 'slice_sections' 'sortedOrder' 'str_detect_any'
  'str_unquote'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'Summary_ultrapolaRplot.Rd':
plotTraces
  Code: function(myXY_data, compiledList, interval = 1, mean.lines =
                 TRUE, points.display = FALSE, palette = c(),
                 bands.lines = FALSE, bands.fill = TRUE,
                 legend.position = "topleft", means.styles = c(),
                 standard.deviation.styles = "l", plot.ticks = FALSE,
                 plot.labels = FALSE, legend.size = 3, transparency =
                 0.37, pdf.filename = c(), bands.linewidth = 0.3,
                 png.filename = c(), legend.linewidth = 5,
                 means.linewidth = 3, tick.size = 2)
  Docs: function(rawTraces, polarTraces)
  Argument names in code not in docs:
    myXY_data compiledList interval mean.lines points.display palette
    bands.lines bands.fill legend.position means.styles
    standard.deviation.styles plot.ticks plot.labels legend.size
    transparency pdf.filename bands.linewidth png.filename
    legend.linewidth means.linewidth tick.size
  Argument names in docs not in code:
    rawTraces polarTraces
  Mismatches in argument names:
    Position: 1 Code: myXY_data Docs: rawTraces
    Position: 2 Code: compiledList Docs: polarTraces

* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'Summary_ultrapolaRplot.Rd'
  'rawTraces' 'polarTraces'
Objects in \usage without \alias in Rd file 'Summary_ultrapolaRplot.Rd':
  'plotTraces'
Assignments in \usage in Rd file 'Summary_ultrapolaRplot.Rd':
  rawTraces <- loadTraces("/path/to/project/", "vowels")
  polarTraces <- makeTracesPolar(rawTraces)

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in 'ultrapolaRplot-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ultrapolaRplot
> ### Title: ultrapolaRplot
> ### Aliases: ultrapolaRplot
> 
> ### ** Examples
> 
> library(ultrapolaRplot)
> rawTraces <- loadTraces('../palatals/', 'cons')
Error in loadTraces("../palatals/", "cons") : 
  metadata file does not exist in given directory
Execution halted
* checking PDF version of manual ... [11s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! LaTeX Error: Unicode character ʲ (U+02B2)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ɯ (U+026F)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ɑ (U+0251)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 7 WARNINGs, 3 NOTEs