test_that("No error with default arguments", { sample_ERR2044662 <- "ERR2044662" expect_no_error(check_DB(nice_tidy, sample_id = sample_ERR2044662)) }) test_that("No error if pre-processing of data is added before function", { sample_ERR2044662 <- "ERR2044662" nice_no_absents <- nice_tidy %>% filter(Abundance > 0) expect_no_error(check_DB(nice_no_absents, sample_id = sample_ERR2044662)) }) test_that("Test if it is ok to change range of values", { sample_ERR2044662 <- "ERR2044662" expect_no_error(check_DB(nice_tidy, sample_id = sample_ERR2044662, range = 20:30)) }) test_that("Expect error for k = 1", { sample_ERR2044662 <- "ERR2044662" expect_error(check_DB(nice_tidy, sample_id = sample_ERR2044662, range = 1:10)) }) test_that("Should throw error if max k is reached", { sample_ERR2044662 <-"ERR2044662" max_k_of_ERR2044662 <- length( unique( pull( filter(nice_tidy, Sample == sample_ERR2044662), Abundance))) # expect_error(check_DB(nice_tidy, sample_id = sample_ERR2044662, range = 2:(max_k_of_ERR2044662+1))) }) test_that("no error for plot option", { sample_ERR2044662 <- "ERR2044662" expect_no_error(check_DB(nice_tidy, sample_id = sample_ERR2044662, with_plot = TRUE)) }) test_that("Throws an error if input is a vector", { sample_ERR2044662 <- nice_tidy %>% filter(Sample == "ERR2044662") %>% pull(Abundance) expect_error(check_DB(sample_ERR2044662, sample_id = sample_ERR2044662)) }) test_that("Throws an error is Abundance column is not numeric, example with character", { nice_tidy_wrong <- nice_tidy %>% mutate(Abundance = as.character(Abundance)) expect_error(check_DB(nice_tidy_wrong, sample_id = "ERR2044662")) }) test_that("Throws an error is Abundance column is not numeric, example with factor", { nice_tidy_wrong <- nice_tidy %>% mutate(Abundance = as.factor(Abundance)) expect_error(check_DB(nice_tidy_wrong, sample_id = "ERR2044662")) })