downloading reverse dependencies ‘CERFIT’, ‘CIMTx’, ‘cmprskcoxmsm’, ‘IRexamples’, ‘OVtool’, ‘paths’, ‘riAFTBART’, ‘SBdecomp’, ‘semicmprskcoxmsm’, ‘twangMediation’, ‘cobalt’, ‘lmtp’ trying URL 'file:///data/Repositories/CRAN/src/contrib/CERFIT_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CIMTx_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cmprskcoxmsm_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/IRexamples_0.0.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OVtool_1.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/paths_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/riAFTBART_0.3.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SBdecomp_1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/semicmprskcoxmsm_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/twangMediation_1.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cobalt_4.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/lmtp_1.5.3.tar.gz' installing dependencies ‘CBPS’, ‘cem’, ‘designmatch’, ‘DisImpact’, ‘ebal’, ‘ife’, ‘MatchThem’, ‘optweight’, ‘RRF’, ‘RSelenium’, ‘sbw’, ‘tidygeocoder’, ‘tmle’, ‘twang’, ‘twangContinuous’, ‘varhandle’ Warning: package ‘designmatch’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘binman’, ‘wdman’ begin installing package ‘binman’ begin installing package ‘CBPS’ begin installing package ‘tmle’ begin installing package ‘DisImpact’ begin installing package ‘varhandle’ begin installing package ‘tidygeocoder’ begin installing package ‘RRF’ begin installing package ‘ebal’ begin installing package ‘twangContinuous’ begin installing package ‘optweight’ begin installing package ‘MatchThem’ begin installing package ‘cem’ begin installing package ‘sbw’ begin installing package ‘ife’ begin installing package ‘twang’ * installing *source* package ‘varhandle’ ... ** this is package ‘varhandle’ version ‘2.0.6’ ** package ‘varhandle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (varhandle) * installing *source* package ‘ebal’ ... ** this is package ‘ebal’ version ‘0.1-8’ ** package ‘ebal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ebal) * installing *source* package ‘ife’ ... ** this is package ‘ife’ version ‘0.2.1’ ** package ‘ife’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ife) * installing *source* package ‘binman’ ... ** this is package ‘binman’ version ‘0.1.3’ ** package ‘binman’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (binman) begin installing package ‘wdman’ * installing *source* package ‘tidygeocoder’ ... ** this is package ‘tidygeocoder’ version ‘1.0.6’ ** package ‘tidygeocoder’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidygeocoder) * installing *source* package ‘wdman’ ... ** this is package ‘wdman’ version ‘0.2.6’ ** package ‘wdman’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wdman) begin installing package ‘RSelenium’ * installing *source* package ‘RRF’ ... ** this is package ‘RRF’ version ‘1.9.4.1’ ** package ‘RRF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-11) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4PiEK4/R.INSTALL318559729c4bb4/RRF/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRF_init.c -o RRF_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o classTree.c: In function ‘predictClassTree’: classTree.c:454:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 454 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ classTree.c:425:22: note: ‘cbestsplit’ was declared here 425 | int m, i, j, k, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o regTree.c: In function ‘predictRegTree’: regTree.c:335:31: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 335 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ regTree.c:308:22: note: ‘cbestsplit’ was declared here 308 | int i, j, k, m, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:64:9: warning: variable ‘flagReg’ set but not used [-Wunused-but-set-variable] 64 | int flagReg;//new | ^~~~~~~ regrf.c:54:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable] 54 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand, | ^~~~~~ regrf.c:219:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:57:36: note: ‘ytree’ was declared here 57 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini; | ^~~~~ regrf.c:219:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:63:30: note: ‘nodexts’ was declared here 63 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o rf.c: In function ‘classRF’: rf.c:110:10: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable] 110 | *tp, *wr; | ^~ rf.c:92:15: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:92:9: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:437:13: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized] 437 | computeProximity(prox, oobprox, nodex, jin, oobpair, near); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:102:43: note: ‘oobpair’ was declared here 102 | *at, *a, *b, *mind, *nind, *jts, *oobpair; | ^~~~~~~ rf.c:385:25: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized] 385 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 | errts + jb*(nclass+1), *labelts, nclts, cut); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:96:29: note: ‘nclts’ was declared here 96 | *nrightimp, *nout, *nclts, Ntree; | ^~~~~ gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c rfsub.f -o rfsub.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RRF.so RRF_init.o classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4PiEK4/R.INSTALL318559729c4bb4/RRF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RRF/00new/RRF/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RRF) * installing *source* package ‘twangContinuous’ ... ** this is package ‘twangContinuous’ version ‘1.0.0’ ** package ‘twangContinuous’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twangContinuous) * installing *source* package ‘sbw’ ... ** this is package ‘sbw’ version ‘1.2’ ** package ‘sbw’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sbw) * installing *source* package ‘DisImpact’ ... ** this is package ‘DisImpact’ version ‘0.0.21’ ** package ‘DisImpact’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DisImpact) * installing *source* package ‘optweight’ ... ** this is package ‘optweight’ version ‘1.0.0’ ** package ‘optweight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (optweight) * installing *source* package ‘RSelenium’ ... ** this is package ‘RSelenium’ version ‘1.7.9’ ** package ‘RSelenium’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSelenium) * installing *source* package ‘tmle’ ... ** this is package ‘tmle’ version ‘2.1.1’ ** package ‘tmle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tmle) * installing *source* package ‘cem’ ... ** this is package ‘cem’ version ‘1.1.31’ ** package ‘cem’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cem) * installing *source* package ‘CBPS’ ... ** this is package ‘CBPS’ version ‘0.24’ ** package ‘CBPS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CBPS) * installing *source* package ‘MatchThem’ ... ** this is package ‘MatchThem’ version ‘1.2.1’ ** package ‘MatchThem’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatchThem) * installing *source* package ‘twang’ ... ** this is package ‘twang’ version ‘2.6.2’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8uCjmk/R.INSTALL31856d134e0067/twang/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ks.c -o ks.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o twang.so init.o ks.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8uCjmk/R.INSTALL31856d134e0067/twang/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-twang/00new/twang/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twang) checking twang_2.6.2.tar.gz ... checking CERFIT_0.1.1.tar.gz ... checking CIMTx_1.2.0.tar.gz ... checking cmprskcoxmsm_0.2.1.tar.gz ... checking IRexamples_0.0.4.tar.gz ... checking OVtool_1.0.3.tar.gz ... checking paths_0.1.2.tar.gz ... checking riAFTBART_0.3.3.tar.gz ... checking SBdecomp_1.2.tar.gz ... checking semicmprskcoxmsm_0.2.0.tar.gz ... checking twangMediation_1.2.1.tar.gz ... checking cobalt_4.6.1.tar.gz ... checking lmtp_1.5.3.tar.gz ... Depends: Package: twang Depends: R (>= 2.10) Imports: gbm (>= 1.5-3), survey, xtable, lattice, latticeExtra, MatrixModels, data.table, ggplot2, xgboost Timings: user system elapsed twang 85.625 7.743 93.476 Results: Check status summary: ERROR NOTE OK Source packages 0 0 1 Reverse depends 2 1 9 Check results summary: twang ... OK rdepends_CERFIT ... OK rdepends_CIMTx ... ERROR * checking examples ... [5s/5s] ERROR rdepends_cmprskcoxmsm ... OK rdepends_cobalt ... NOTE * checking Rd cross-references ... NOTE rdepends_IRexamples ... OK rdepends_lmtp ... OK rdepends_OVtool ... ERROR * checking re-building of vignette outputs ... [20s/20s] ERROR rdepends_paths ... OK rdepends_riAFTBART ... OK rdepends_SBdecomp ... OK rdepends_semicmprskcoxmsm ... OK rdepends_twangMediation ... OK Check results changes: Package: cmprskcoxmsm Check: CRAN incoming feasibility Old result: NOTE Package: paths [Old version: 0.1.1, New version: 0.1.2] Check: examples Old result: ERROR New result: OK Package: SBdecomp Check: CRAN incoming feasibility Old result: NOTE Package: semicmprskcoxmsm Check: CRAN incoming feasibility Old result: NOTE