rcv_results <- readRDS(test_path("data", "rcv_results.rds")) opt <- getOption("dplyr.summarise.inform", default = "FALSE") options(dplyr.summarise.inform = FALSE) compl <- unnest(rcv_results, .metrics) %>% group_by(deg_free, degree, `wt df`, `wt degree`, .config, .metric, .estimator) %>% summarize( mean = mean(.estimate, na.rm = TRUE), n = sum(!is.na(.estimator)), std_err = sd(.estimate, na.rm = TRUE) / sqrt(n) ) %>% ungroup() %>% arrange(.config) options(dplyr.summarise.inform = opt) test_that("estimate method", { expect_equal( collect_metrics(rcv_results)[, names(compl)] %>% arrange(.config), compl ) }) test_that("estimate method (with apparent resample)", { skip_on_cran() skip_if_not_installed("kknn") library(parsnip) library(rsample) library(yardstick) m_set <- metric_set(rmse) res <- fit_resamples( nearest_neighbor("regression"), mpg ~ cyl + hp, bootstraps(mtcars, 5, apparent = TRUE), metrics = m_set, control = control_grid(save_pred = TRUE) ) collected_sum <- collect_metrics(res) %>% select(mean, n, std_err) collected_manual <- res %>% dplyr::filter(id != "Apparent") %>% tidyr::unnest(.metrics) %>% summarize( mean = mean(.estimate), n = sum(!is.na(.estimator)), std_err = sd(.estimate) / sqrt(n) ) expect_equal(collected_sum, collected_manual) })