downloading reverse dependencies ... downloading qeML_1.1.tar.gz ... ok downloading bookdown_0.43.tar.gz ... ok downloading CHNOSZ_2.2.0.tar.gz ... ok downloading chronicle_0.3.tar.gz ... ok downloading evalR_0.0.1.tar.gz ... ok downloading lintr_3.2.0.tar.gz ... ok downloading nipnTK_0.2.0.tar.gz ... ok downloading PowerTOST_1.5-6.tar.gz ... ok downloading recmap_1.0.17.tar.gz ... ok downloading repoRter.nih_0.1.4.tar.gz ... ok downloading secuTrialR_1.3.3.tar.gz ... ok installing dependencies ‘autoimage’, ‘canprot’, ‘cdparcoord’, ‘cyclocomp’, ‘deepnet’, ‘FOCI’, ‘JOUSBoost’, ‘partools’, ‘patrick’, ‘polyreg’, ‘regtools’, ‘rolldown’, ‘toweranNA’, ‘tufte’ also installing the dependency ‘freqparcoord’ begin installing package ‘FOCI’ begin installing package ‘freqparcoord’ begin installing package ‘JOUSBoost’ begin installing package ‘polyreg’ begin installing package ‘autoimage’ begin installing package ‘deepnet’ begin installing package ‘canprot’ begin installing package ‘rolldown’ begin installing package ‘cyclocomp’ begin installing package ‘patrick’ begin installing package ‘tufte’ * installing *source* package ‘cyclocomp’ ... ** this is package ‘cyclocomp’ version ‘1.1.1’ ** package ‘cyclocomp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyclocomp) * installing *source* package ‘deepnet’ ... ** this is package ‘deepnet’ version ‘0.2.1’ ** package ‘deepnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deepnet) * installing *source* package ‘rolldown’ ... ** this is package ‘rolldown’ version ‘0.2’ ** package ‘rolldown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rolldown) * installing *source* package ‘FOCI’ ... ** this is package ‘FOCI’ version ‘0.1.3’ ** package ‘FOCI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FOCI) * installing *source* package ‘tufte’ ... ** this is package ‘tufte’ version ‘0.14.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tufte) * installing *source* package ‘polyreg’ ... ** this is package ‘polyreg’ version ‘0.8.0’ ** package ‘polyreg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polyreg) begin installing package ‘regtools’ * installing *source* package ‘canprot’ ... ** this is package ‘canprot’ version ‘2.0.0’ ** package ‘canprot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (canprot) * installing *source* package ‘patrick’ ... ** this is package ‘patrick’ version ‘0.3.0’ ** package ‘patrick’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (patrick) * installing *source* package ‘autoimage’ ... ** this is package ‘autoimage’ version ‘2.2.3’ ** package ‘autoimage’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (autoimage) * installing *source* package ‘freqparcoord’ ... ** this is package ‘freqparcoord’ version ‘1.0.1’ ** package ‘freqparcoord’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freqparcoord) * installing *source* package ‘JOUSBoost’ ... ** this is package ‘JOUSBoost’ version ‘2.1.0’ ** package ‘JOUSBoost’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEZ4luJ/R.INSTALL357291174e9a06/JOUSBoost/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c grid_probs.cpp -o grid_probs.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o JOUSBoost.so RcppExports.o grid_probs.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEZ4luJ/R.INSTALL357291174e9a06/JOUSBoost/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-JOUSBoost/00new/JOUSBoost/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JOUSBoost) * installing *source* package ‘regtools’ ... ** this is package ‘regtools’ version ‘1.7.0’ ** package ‘regtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (regtools) begin installing package ‘toweranNA’ begin installing package ‘partools’ * installing *source* package ‘toweranNA’ ... ** this is package ‘toweranNA’ version ‘0.1.0’ ** package ‘toweranNA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (toweranNA) * installing *source* package ‘partools’ ... ** this is package ‘partools’ version ‘1.1.6’ ** package ‘partools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (partools) begin installing package ‘cdparcoord’ * installing *source* package ‘cdparcoord’ ... ** this is package ‘cdparcoord’ version ‘1.0.1’ ** package ‘cdparcoord’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cdparcoord) checking tufte_0.14.0.tar.gz ... checking bookdown_0.43.tar.gz ... checking qeML_1.1.tar.gz ... checking CHNOSZ_2.2.0.tar.gz ... checking chronicle_0.3.tar.gz ... checking evalR_0.0.1.tar.gz ... checking lintr_3.2.0.tar.gz ... checking nipnTK_0.2.0.tar.gz ... checking PowerTOST_1.5-6.tar.gz ... checking recmap_1.0.17.tar.gz ... checking repoRter.nih_0.1.4.tar.gz ... checking secuTrialR_1.3.3.tar.gz ... Depends: Package: tufte Imports: htmltools, knitr (>= 1.28), rmarkdown (>= 2.11), xfun (>= 0.13) Timings: user system elapsed tufte 21.102 3.106 25.896 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 10 Check results summary: tufte ... OK rdepends_bookdown ... OK rdepends_CHNOSZ ... OK rdepends_chronicle ... OK rdepends_evalR ... OK rdepends_lintr ... OK rdepends_nipnTK ... OK rdepends_PowerTOST ... OK rdepends_qeML ... OK rdepends_recmap ... NOTE * checking Rd cross-references ... NOTE rdepends_repoRter.nih ... OK rdepends_secuTrialR ... OK Check results changes: Package: lintr Check: DESCRIPTION meta-information Old result: NOTE New result: OK