if (!testthat:::on_cran()) { context("Testing STOMP Search") library(tsmp) data <- mp_toy_data$data[1:200, 1] w <- mp_toy_data$sub_len mp <- tsmp(data, window_size = w, mode = "stomp", verbose = 0) motifs <- find_motif(mp, n_motifs = 2) test_that("Motifs are correct", { expect_equal(motifs$motif$motif_idx[[1]], c(33, 102)) expect_equal(motifs$motif$motif_idx[[2]], c(9, 127)) expect_equal(length(motifs$motif$motif_neighbor[[1]]), 1) expect_equal(motifs$motif$motif_neighbor[[2]], c(148, 77)) expect_equal(motifs$motif$motif_window[[1]], 30) }) test_that("Errors", { mpe <- mp mpe$data[[1]] <- table(mp$data[[1]]) expect_error(find_motif(mpe, n_motifs = 2), "`data` must be `matrix`") }) test_that("Handles other paths", { mpe <- mp # data as list mpe$data[[1]] <- list(mp$data[[1]]) expect_silent(find_motif(mpe, n_motifs = 2)) # data as vector mpe$data[[1]] <- as.vector(mp$data[[1]]) expect_silent(find_motif(mpe, n_motifs = 2)) }) }