context("pigot_rho") test_that("usage", { set.seed(42) if (requireNamespace("DDD")) { # DDD tree expected to slow down diversification focal_tree <- DDD::dd_sim(pars = c(1, 0, 10), age = 7)$tes rho <- treestats::pigot_rho(focal_tree) testthat::expect_lt(rho, 0) } set.seed(42) # BD tree, expected increase in diversification focal_tree <- ape::rphylo(n = 100, birth = 1, death = 0) rho <- treestats::pigot_rho(focal_tree) testthat::expect_gt(rho, 0) ltab <- treestats::phylo_to_l(focal_tree) rho2 <- treestats::pigot_rho(ltab) testthat::expect_equal(rho, rho2) if (requireNamespace("geiger")) { # and we can do with extinct trees as well focal_tree <- ape::rphylo(n = 100, birth = 1, death = 0.2, fossils = TRUE) rho4 <- treestats::pigot_rho(focal_tree) extant_tree <- geiger::drop.extinct(focal_tree) rho5 <- treestats::pigot_rho(extant_tree) testthat::expect_false(rho4 == rho5) } # use very small tree to trigger use of complete method: focal_tree <- ape::rphylo(n = 6, birth = 1, death = 0) rho <- treestats::pigot_rho(focal_tree) }) test_that("wrong_object", { testthat::expect_error( treestats::pigot_rho(10), "input object has to be phylo or ltable" ) testthat::expect_error( treestats::pigot_rho(list()), "input object has to be phylo or ltable" ) })