context("max width") test_that("usage", { if (requireNamespace("treebalance")) { set.seed(42) focal_tree <- ape::rphylo(n = 100, birth = 1, death = 0) a1 <- treestats::max_width(focal_tree) a2 <- treebalance::maxWidth(focal_tree) testthat::expect_equal(a1, a2) ltab <- treestats::phylo_to_l(focal_tree) testthat::expect_equal(treestats::max_width(focal_tree), treestats::max_width(ltab)) # with extinct species: focal_tree <- ape::rphylo(n = 100, birth = 1, death = 0.2, fossils = TRUE) a1 <- treestats::max_width(focal_tree) a2 <- treebalance::maxWidth(focal_tree) testthat::expect_equal(a1, a2) ltab <- treestats::phylo_to_l(focal_tree) testthat::expect_equal(treestats::max_width(focal_tree), treestats::max_width(ltab)) } }) test_that("normalization", { set.seed(42) focal_tree <- ape::rphylo(n = 30, birth = 1, death = 0) c1 <- treestats::max_width(focal_tree) c2 <- treestats::max_width(focal_tree, normalization = "tips") testthat::expect_lt(c2, c1) c3 <- treestats::max_width(treestats::phylo_to_l(focal_tree), normalization = "tips") testthat::expect_equal(c2, c3) stats1 <- c() stats2 <- c() for (n in seq(100, 200, by = 10)) { focal_tree <- ape::rphylo(n = n, birth = 1, death = 0) stats1 <- c(stats1, treestats::max_width(focal_tree)) stats2 <- c(stats2, treestats::max_width(focal_tree, normalization = "tips")) } a1 <- cor(stats1, seq(100, 200, by = 10)) a2 <- cor(stats2, seq(100, 200, by = 10)) testthat::expect_lt(a2, a1) testthat::expect_lt(a2, 0.6) }) test_that("wrong_object", { testthat::expect_error( treestats::max_width(10), "input object has to be phylo or ltable" ) testthat::expect_error( treestats::max_width(list()), "input object has to be phylo or ltable" ) })