context("diameter") test_that("usage", { set.seed(42) focal_tree <- ape::rphylo(n = 100, birth = 1, death = 0) a1_1 <- treestats::diameter(focal_tree, weight = TRUE) a1_2 <- treestats::diameter(focal_tree, weight = FALSE) # because treeCentrality is not available on CRAN, we precompute reference # values: a2_1 <- 8.750583 # treeCentrality::computeDiameter(focal_tree, # weight = TRUE)) a2_2 <- 21 # treeCentrality::computeDiameter(focal_tree, # weight = FALSE)) testthat::expect_equal(a1_1, a2_1, tolerance = 0.01) testthat::expect_equal(a1_2, a2_2) ltab <- treestats::phylo_to_l(focal_tree) testthat::expect_equal(treestats::diameter(focal_tree, weight = TRUE), treestats::diameter(ltab, weight = TRUE)) testthat::expect_equal(treestats::diameter(focal_tree, weight = FALSE), treestats::diameter(ltab, weight = FALSE)) focal_tree <- ape::rphylo(n = 100, birth = 1, death = 0.2, fossils = TRUE) a1_1 <- treestats::diameter(focal_tree, weight = TRUE) a1_2 <- treestats::diameter(focal_tree, weight = FALSE) # because treeCentrality is not available on CRAN, we precompute reference # values: a2_1 <- 11.21469 # treeCentrality::computeDiameter(focal_tree, # weight = TRUE)) a2_2 <- 21 # treeCentrality::computeDiameter(focal_tree, # weight = FALSE)) testthat::expect_equal(a1_1, a2_1, tolerance = 0.01) testthat::expect_equal(a1_2, a2_2) ltab <- treestats::phylo_to_l(focal_tree) testthat::expect_equal(treestats::diameter(focal_tree, weight = TRUE), treestats::diameter(ltab, weight = TRUE)) testthat::expect_equal(treestats::diameter(focal_tree, weight = FALSE), treestats::diameter(ltab, weight = FALSE)) }) test_that("wrong_object", { testthat::expect_error( treestats::diameter(10), "input object has to be phylo or ltable" ) testthat::expect_error( treestats::diameter(list()), "input object has to be phylo or ltable" ) })