R Under development (unstable) (2024-09-25 r87194 ucrt) -- "Unsuffered Consequences"
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> 
> library("tram")
Loading required package: mlt
Loading required package: basefun
Loading required package: variables
Loading required package: mvtnorm
> library("survival")
> 
> ### check if R(Surv(...), as.R.ordered = TRUE) gives
> ### results identical to KaplanMeier, also in case
> ### of ties. 
> 
> ### Bland & Altman, BMJ 1998;317:1572
> prg <- data.frame(time = c(1, 1, 1, 1, 1, 1, 2, 2, 
+                            2, 2, 2, 3, 3, 3, 4,
+                            4, 4, 6, 6, 9, 9, 9, 10, 13, 16,
+                            2, 3, 4, 7, 7, 8, 8, 9, 9, 9, 
+                            11, 24, 24),
+                   event = rep(c(1, 0), c(25, 13)))
> ut <- with(prg, sort(unique(time[event == 1])))
> 
> m <- Coxph(R(Surv(time, event), as.R.ordered = TRUE) ~ 1, data = prg)
> t1 <- predict(as.mlt(m), newdata = data.frame(time = 1), type = "surv")
> t2 <- c(summary(survfit(Surv(time, event) ~ 1, data = prg), time = ut)$surv, 0)
> stopifnot(all.equal(t1, t2, check.attributes = FALSE, tol = 1e-4))
> 
> ### AML
> ut <- with(aml, sort(unique(time[status == 1])))
> 
> m <- Coxph(R(Surv(time, status), as.R.ordered = TRUE) ~ 1, data = aml)
> t1 <- predict(as.mlt(m), newdata = data.frame(1), type = "surv")
> t2 <- c(summary(survfit(Surv(time, status) ~ 1, data = aml), time = ut)$surv, 0)
> 
> stopifnot(all.equal(t1, t2, check.attributes = FALSE, tol = 1e-4))
> 
> 
> proc.time()
   user  system elapsed 
   0.96    0.21    1.17