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Type 'q()' to quit R. > if ( requireNamespace("tinytest", quietly=TRUE) ){ + tinytest::test_package("track2KBA") + } test_estSpaceUse.R............ 0 tests Attaching package: 'lubridate' The following objects are masked from 'package:base': date, intersect, setdiff, union test_estSpaceUse.R............ 0 tests test_estSpaceUse.R............ 0 tests Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE test_estSpaceUse.R............ 0 tests test_estSpaceUse.R............ 0 tests test_estSpaceUse.R............ 1 tests OK test_estSpaceUse.R............ 1 tests OK test_estSpaceUse.R............ 2 tests OK test_estSpaceUse.R............ 3 tests OK test_estSpaceUse.R............ 4 tests OK test_estSpaceUse.R............ 5 tests OK test_estSpaceUse.R............ 6 tests OK test_estSpaceUse.R............ 7 tests OK test_estSpaceUse.R............ 8 tests OK test_estSpaceUse.R............ 8 tests OK NOTE: projection is data specific test_estSpaceUse.R............ 8 tests OK test_estSpaceUse.R............ 9 tests OK test_estSpaceUse.R............ 9 tests OK test_estSpaceUse.R............ 9 tests OK test_estSpaceUse.R............ 9 tests OK NOTE: projection is data specific test_estSpaceUse.R............ 9 tests OK test_estSpaceUse.R............ 10 tests OK test_estSpaceUse.R............ 10 tests OK NOTE: projection is data specific test_estSpaceUse.R............ 10 tests OK test_estSpaceUse.R............ 11 tests OK 1.6s test_findScale.R.............. 0 tests test_findScale.R.............. 0 tests test_findScale.R.............. 0 tests Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union test_findScale.R.............. 0 tests test_findScale.R.............. 0 tests test_findScale.R.............. 1 tests OK test_findScale.R.............. 1 tests OK test_findScale.R.............. 1 tests OK test_findScale.R.............. 1 tests OK test_findScale.R.............. 1 tests OK NOTE: projection is data specific test_findScale.R.............. 1 tests OK test_findScale.R.............. 2 tests OK test_findScale.R.............. 3 tests OK As no 'sumTrips' was supplied, the foraging range and mag, cannot be calculated. No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 4 tests OK As no 'sumTrips' was supplied, the foraging range and mag, cannot be calculated. No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 5 tests OK No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 6 tests OK No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 7 tests OK test_findScale.R.............. 7 tests OK test_findScale.R.............. 7 tests OK No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 8 tests OK test_findScale.R.............. 9 tests OK As no 'sumTrips' was supplied, the foraging range and mag, cannot be calculated. No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 10 tests OK As no 'sumTrips' was supplied, the foraging range and mag, cannot be calculated. No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 11 tests OK test_findScale.R.............. 11 tests OK No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 12 tests OK test_findScale.R.............. 12 tests OK No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 13 tests OK test_findScale.R.............. 13 tests OK test_findScale.R.............. 13 tests OK test_findScale.R.............. 14 tests OK test_findScale.R.............. 14 tests OK As no 'sumTrips' was supplied, the foraging range and mag, cannot be calculated. No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. As no 'sumTrips' was supplied, the foraging range and mag, cannot be calculated. No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.011 km squared. test_findScale.R.............. 15 tests OK test_findScale.R.............. 15 tests OK test_findScale.R.............. 15 tests OK test_findScale.R.............. 15 tests OK NOTE: projection is data specific test_findScale.R.............. 15 tests OK No 'res' was specified. Movement scale in the data was compared to a 500-cell grid with cell size of 0.245 km squared. The average step length in your data is greater than 20km. Data at this resolution are likely inappropriate for identifying Area-Restricted Search behavior. Consider using another scale parameter (e.g. href). test_findScale.R.............. 16 tests OK 0.8s test_findSite.R............... 0 tests test_findSite.R............... 0 tests test_findSite.R............... 0 tests NOTE: projection is data specific test_findSite.R............... 0 tests test_findSite.R............... 0 tests test_findSite.R............... 1 tests OK test_findSite.R............... 2 tests OK test_findSite.R............... 3 tests OK test_findSite.R............... 4 tests OK test_findSite.R............... 5 tests OK test_findSite.R............... 6 tests OK test_findSite.R............... 7 tests OK test_findSite.R............... 8 tests OK test_findSite.R............... 9 tests OK 1.3s test_formatFields.R........... 0 tests test_formatFields.R........... 0 tests test_formatFields.R........... 0 tests test_formatFields.R........... 1 tests OK test_formatFields.R........... 2 tests OK test_formatFields.R........... 3 tests OK test_formatFields.R........... 4 tests OK test_formatFields.R........... 5 tests OK test_formatFields.R........... 6 tests OK Column supplied to 'fieldDateTime' is not of class POSIXct, the function will attempt to convert it. test_formatFields.R........... 7 tests OK Column supplied to 'fieldDateTime' is not of class POSIXct, the function will attempt to convert it. test_formatFields.R........... 8 tests OK test_formatFields.R........... 8 tests OK No fieldID specified, so the pre-existing column named 'ID' used. If another field desired as IDentifier, specify in fieldID argument. Column supplied to 'fieldDateTime' is not of class POSIXct, the function will attempt to convert it. test_formatFields.R........... 9 tests OK test_formatFields.R........... 9 tests OK test_formatFields.R........... 10 tests OK test_formatFields.R........... 11 tests OK test_formatFields.R........... 12 tests OK test_formatFields.R........... 13 tests OK test_formatFields.R........... 14 tests OK test_formatFields.R........... 15 tests OK test_formatFields.R........... 15 tests OK NOTE: as fieldID != 'ID' and a column of this name is present, this column has been renamed to 'origID' and ID corresponds to the fieldID specified. test_formatFields.R........... 16 tests OK NOTE: as fieldID != 'ID' and a column of this name is present, this column has been renamed to 'origID' and ID corresponds to the fieldID specified. test_formatFields.R........... 17 tests OK test_formatFields.R........... 17 tests OK test_formatFields.R........... 17 tests OK test_formatFields.R........... 17 tests OK No format supplied for Date and Time fields, a default format ('ymd_HMS') attempted when combining the fields. If error produced, see help page ('?lubridate::parse_date_time') for information on date formats. test_formatFields.R........... 18 tests OK test_formatFields.R........... 19 tests OK Only a Date column (fieldDate) supplied, this will be used to create the DateTime column. If you have a Time column, indicate it in the 'fieldTime' argument. No format supplied for the Date field, default ('ymd') attempted. If warning that 'no formats are found' produced, see help page ('?lubridate::parse_date_time') for information on Date formats. test_formatFields.R........... 20 tests OK Only a Date column (fieldDate) supplied, this will be used to create the DateTime column. If you have a Time column, indicate it in the 'fieldTime' argument. test_formatFields.R........... 21 tests OK test_formatFields.R........... 21 tests OK NOTE: as fieldID != 'ID' and a column of this name is present, this column has been renamed to 'origID' and ID corresponds to the fieldID specified. test_formatFields.R........... 22 tests OK 0.2s test_indEffectTest.R.......... 0 tests test_indEffectTest.R.......... 0 tests test_indEffectTest.R.......... 0 tests test_indEffectTest.R.......... 0 tests test_indEffectTest.R.......... 0 tests test_indEffectTest.R.......... 0 tests NOTE: projection is data specific test_indEffectTest.R.......... 0 tests test_indEffectTest.R.......... 1 tests OK 2.6s test_mapKDE.R................. 0 tests test_mapKDE.R................. 0 tests test_mapKDE.R................. 0 tests test_mapKDE.R................. 0 tests test_mapKDE.R................. 0 tests NOTE: projection is data specific test_mapKDE.R................. 0 tests No grid resolution ('res') was specified, or the specified resolution was >99 km and therefore ignored. Space use was calculated on a 500-cell grid, with cells of 0.411 square km test_mapKDE.R................. 0 tests test_mapKDE.R................. 1 tests OK No grid resolution ('res') was specified, or the specified resolution was >99 km and therefore ignored. Space use was calculated on a 500-cell grid, with cells of 0.411 square km test_mapKDE.R................. 1 tests OK test_mapKDE.R................. 2 tests OK test_mapKDE.R................. 3 tests OK test_mapKDE.R................. 4 tests OK test_mapKDE.R................. 5 tests OK 2.8s test_mapSite.R................ 0 tests test_mapSite.R................ 0 tests test_mapSite.R................ 0 tests test_mapSite.R................ 0 tests NOTE: projection is data specific test_mapSite.R................ 0 tests test_mapSite.R................ 0 tests test_mapSite.R................ 0 tests test_mapSite.R................ 1 tests OK test_mapSite.R................ 2 tests OK test_mapSite.R................ 3 tests OK test_mapSite.R................ 4 tests OK test_mapSite.R................ 4 tests OK test_mapSite.R................ 5 tests OK test_mapSite.R................ 6 tests OK test_mapSite.R................ 7 tests OK No value for population size provided. Output for N_animals is in % of pop size test_mapSite.R................ 7 tests OK test_mapSite.R................ 8 tests OK 2.4s test_mapTrips.R............... 0 tests test_mapTrips.R............... 0 tests test_mapTrips.R............... 0 tests test_mapTrips.R............... 0 tests test_mapTrips.R............... 0 tests No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_mapTrips.R............... 0 tests test_mapTrips.R............... 1 tests OK test_mapTrips.R............... 2 tests OK test_mapTrips.R............... 3 tests OK test_mapTrips.R............... 4 tests OK Trips colored by completeness. Indicate colorBy=='trip' to color by trips. test_mapTrips.R............... 5 tests OK test_mapTrips.R............... 5 tests OK test_mapTrips.R............... 5 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. track A1 does not return to the colony test_mapTrips.R............... 5 tests OK Trips colored by completeness. Indicate colorBy=='trip' to color by trips. test_mapTrips.R............... 6 tests OK 0.8s test_move2KBA.R............... 0 tests test_move2KBA.R............... 1 tests OK Study had no information on colony location. Used first locations as colony location. If a different location desired, please manually specify. test_move2KBA.R............... 2 tests OK Study had no information on colony location. Used first locations as colony location. If a different location desired, please manually specify. test_move2KBA.R............... 3 tests OK Study had no information on colony location. Used first locations as colony location. If a different location desired, please manually specify. test_move2KBA.R............... 4 tests OK Study had no information on colony location. Used first locations as colony location. If a different location desired, please manually specify. test_move2KBA.R............... 5 tests OK test_move2KBA.R............... 6 tests OK 0.2s test_projectTracks.R.......... 0 tests test_projectTracks.R.......... 0 tests test_projectTracks.R.......... 0 tests test_projectTracks.R.......... 0 tests test_projectTracks.R.......... 1 tests OK test_projectTracks.R.......... 2 tests OK test_projectTracks.R.......... 3 tests OK test_projectTracks.R.......... 4 tests OK test_projectTracks.R.......... 4 tests OK test_projectTracks.R.......... 4 tests OK test_projectTracks.R.......... 5 tests OK test_projectTracks.R.......... 6 tests OK NOTE: projection center default used, which is at 0 Lat 0 Lon. If your data fall far north or south of this location (e.g. near the poles) the shape of your data will be highly distorted, either set 'custom=T' or use a region-specific EA projection of your choosing (best option). test_projectTracks.R.......... 6 tests OK test_projectTracks.R.......... 7 tests OK test_projectTracks.R.......... 7 tests OK test_projectTracks.R.......... 8 tests OK test_projectTracks.R.......... 8 tests OK test_projectTracks.R.......... 9 tests OK test_projectTracks.R.......... 10 tests OK 0.5s test_repAssess.R.............. 0 tests test_repAssess.R.............. 0 tests Loading required package: ade4 Loading required package: adehabitatMA Loading required package: adehabitatLT Loading required package: CircStats Loading required package: MASS Attaching package: 'MASS' The following object is masked from 'package:dplyr': select Loading required package: boot Attaching package: 'adehabitatLT' The following object is masked from 'package:dplyr': id test_repAssess.R.............. 0 tests Attaching package: 'raster' The following object is masked from 'package:MASS': select The following object is masked from 'package:dplyr': select test_repAssess.R.............. 0 tests test_repAssess.R.............. 0 tests test_repAssess.R.............. 0 tests NOTE: projection is data specific test_repAssess.R.............. 0 tests test_repAssess.R.............. 0 tests test_repAssess.R.............. 1 tests OK test_repAssess.R.............. 2 tests OK test_repAssess.R.............. 3 tests OK nls (non linear regression) successful, asymptote estimated for bootstrap sample. Estimated asymptote differs from target; be aware that representativeness value is based on estimated asymptote (i.e. est_asym). test_repAssess.R.............. 4 tests OK test_repAssess.R.............. 5 tests OK test_repAssess.R.............. 5 tests OK test_repAssess.R.............. 5 tests OK nls (non linear regression) unsuccessful, likely due to small sample or few iterations. Data may not be representative, 'out' derived from mean inclusion value at highest sample size. test_repAssess.R.............. 6 tests OK test_repAssess.R.............. 6 tests OK nls (non linear regression) successful, asymptote estimated for bootstrap sample. Estimated asymptote differs from target; be aware that representativeness value is based on estimated asymptote (i.e. est_asym). test_repAssess.R.............. 7 tests OK test_repAssess.R.............. 7 tests OK test_repAssess.R.............. 7 tests OK test_repAssess.R.............. 7 tests OK nls (non linear regression) unsuccessful, likely due to small sample or few iterations. Data may not be representative, 'out' derived from mean inclusion value at highest sample size. test_repAssess.R.............. 8 tests OK nls (non linear regression) successful, asymptote estimated for bootstrap sample. Estimated asymptote differs from target; be aware that representativeness value is based on estimated asymptote (i.e. est_asym). test_repAssess.R.............. 9 tests OK test_repAssess.R.............. 9 tests OK test_repAssess.R.............. 9 tests OK test_repAssess.R.............. 10 tests OK 6.8s test_tripSplit.R.............. 0 tests test_tripSplit.R.............. 0 tests test_tripSplit.R.............. 0 tests test_tripSplit.R.............. 0 tests test_tripSplit.R.............. 0 tests No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 1 tests OK test_tripSplit.R.............. 1 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 2 tests OK test_tripSplit.R.............. 2 tests OK test_tripSplit.R.............. 2 tests OK test_tripSplit.R.............. 2 tests OK test_tripSplit.R.............. 3 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 4 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 5 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 6 tests OK test_tripSplit.R.............. 6 tests OK test_tripSplit.R.............. 7 tests OK test_tripSplit.R.............. 7 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. track A1 does not return to the colony test_tripSplit.R.............. 8 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 9 tests OK test_tripSplit.R.............. 10 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 11 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 12 tests OK test_tripSplit.R.............. 12 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. track B01 starts out on trip test_tripSplit.R.............. 13 tests OK test_tripSplit.R.............. 14 tests OK test_tripSplit.R.............. 14 tests OK No duration specified, trips splitting will be done using only innerBuff and returnBuff. test_tripSplit.R.............. 15 tests OK 0.3s test_tripSummary.R............ 0 tests test_tripSummary.R............ 0 tests test_tripSummary.R............ 0 tests test_tripSummary.R............ 0 tests test_tripSummary.R............ 0 tests test_tripSummary.R............ 1 tests OK test_tripSummary.R............ 2 tests OK test_tripSummary.R............ 3 tests OK test_tripSummary.R............ 3 tests OK test_tripSummary.R............ 4 tests OK test_tripSummary.R............ 4 tests OK test_tripSummary.R............ 5 tests OK test_tripSummary.R............ 5 tests OK track B01 starts out on trip test_tripSummary.R............ 5 tests OK test_tripSummary.R............ 6 tests OK test_tripSummary.R............ 6 tests OK track A2 does not return to the colony test_tripSummary.R............ 6 tests OK test_tripSummary.R............ 7 tests OK 0.3s All ok, 126 results (20.7s) Warning message: In Matching::ks.boot(WI, BW, alternative = "two.sided", nboots = iterations) : For publication quality p-values it is recommended that 'nboots' be set equal to at least 500 (preferably 1000) > > proc.time() user system elapsed 23.62 1.81 25.50