downloading reverse dependencies ... downloading detourr_0.1.0.tar.gz ... ok downloading ferrn_0.1.0.tar.gz ... ok downloading lionfish_1.0.27.tar.gz ... ok downloading loon.tourr_0.1.4.tar.gz ... ok downloading PPbigdata_1.0.0.tar.gz ... ok downloading spinebil_0.1.6.tar.gz ... ok downloading spinifex_0.3.8.tar.gz ... ok downloading woylier_0.0.9.tar.gz ... ok downloading cheem_0.4.0.0.tar.gz ... ok downloading geozoo_0.5.1.tar.gz ... ok downloading langevitour_0.8.1.tar.gz ... ok downloading mulgar_1.0.5.tar.gz ... ok downloading REPPlab_0.9.6.tar.gz ... ok installing dependencies ‘cassowaryr’, ‘datanugget’, ‘geozoo’, ‘GpGp’, ‘LDRTools’, ‘liminal’, ‘loon’, ‘loon.ggplot’, ‘lqmm’, ‘Rdimtools’, ‘rstiefel’, ‘spinifex’, ‘tourr’ Warning: package ‘liminal’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘ggmulti’, ‘ADMM’, ‘maotai’, ‘mclustcomp’, ‘SparseGrid’ begin installing package ‘ggmulti’ begin installing package ‘ADMM’ begin installing package ‘maotai’ begin installing package ‘mclustcomp’ begin installing package ‘SparseGrid’ begin installing package ‘geozoo’ begin installing package ‘cassowaryr’ begin installing package ‘GpGp’ begin installing package ‘loon’ begin installing package ‘datanugget’ begin installing package ‘rstiefel’ begin installing package ‘LDRTools’ * installing *source* package ‘LDRTools’ ... ** this is package ‘LDRTools’ version ‘0.2-2’ ** package ‘LDRTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LDRTools) * installing *source* package ‘SparseGrid’ ... ** this is package ‘SparseGrid’ version ‘0.8.2’ ** package ‘SparseGrid’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseGrid) begin installing package ‘lqmm’ * installing *source* package ‘geozoo’ ... ** this is package ‘geozoo’ version ‘0.5.1’ ** package ‘geozoo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geozoo) * installing *source* package ‘rstiefel’ ... ** this is package ‘rstiefel’ version ‘1.0.1’ ** package ‘rstiefel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYcS5h9/R.INSTALL2065f35e2b8f2/rstiefel/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rstiefel.c -o rstiefel.o rstiefel.c: In function ‘rtheta_bmf’: rstiefel.c:69:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized] 69 | return th; | ^~ rstiefel.c:44:10: note: ‘th’ was declared here 44 | double th; | ^~ rstiefel.c: In function ‘rtheta_bing’: rstiefel.c:136:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized] 136 | return th; | ^~ rstiefel.c:119:10: note: ‘th’ was declared here 119 | double th; | ^~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rstiefel.so rstiefel.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYcS5h9/R.INSTALL2065f35e2b8f2/rstiefel/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rstiefel/00new/rstiefel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstiefel) * installing *source* package ‘cassowaryr’ ... ** this is package ‘cassowaryr’ version ‘2.0.2’ ** package ‘cassowaryr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cassowaryr) begin installing package ‘tourr’ * installing *source* package ‘datanugget’ ... ** this is package ‘datanugget’ version ‘1.3.1’ ** package ‘datanugget’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (datanugget) * installing *source* package ‘lqmm’ ... ** this is package ‘lqmm’ version ‘1.5.8’ ** package ‘lqmm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphDkiG7/R.INSTALL20672c18ccd19f/lqmm/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lqmm.c -o lqmm.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o lqmm.so init.o lqmm.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphDkiG7/R.INSTALL20672c18ccd19f/lqmm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lqmm/00new/lqmm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lqmm) * installing *source* package ‘ggmulti’ ... ** this is package ‘ggmulti’ version ‘1.0.7’ ** package ‘ggmulti’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggmulti) * installing *source* package ‘tourr’ ... ** this is package ‘tourr’ version ‘1.2.6’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tourr) * installing *source* package ‘loon’ ... ** this is package ‘loon’ version ‘1.4.3’ ** package ‘loon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (loon) begin installing package ‘loon.ggplot’ * installing *source* package ‘mclustcomp’ ... ** this is package ‘mclustcomp’ version ‘0.3.3’ ** package ‘mclustcomp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYvJEvv/R.INSTALL2065e07f90d4e4/mclustcomp/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c auxiliary.cpp -o auxiliary.o auxiliary.cpp: In function ‘Rcpp::List getprobs(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector, int, double)’: auxiliary.cpp:124:10: warning: unused variable ‘maxthr’ [-Wunused-variable] 124 | double maxthr = max(altthr); | ^~~~~~ auxiliary.cpp:125:7: warning: unused variable ‘warningint’ [-Wunused-variable] 125 | int warningint = 0; // 1<-Px, 2<-Py, 3<-Pxy | ^~~~~~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mclustcomp.so RcppExports.o auxiliary.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYvJEvv/R.INSTALL2065e07f90d4e4/mclustcomp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mclustcomp/00new/mclustcomp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mclustcomp) * installing *source* package ‘loon.ggplot’ ... ** this is package ‘loon.ggplot’ version ‘1.3.4’ ** package ‘loon.ggplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (loon.ggplot) * installing *source* package ‘GpGp’ ... ** this is package ‘GpGp’ version ‘0.5.1’ ** package ‘GpGp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptRDEj1/R.INSTALL2065ec640ed5c0/GpGp/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix_mult.cpp -o matrix_mult.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c vecchia_loglik_grad_info.cpp -o vecchia_loglik_grad_info.o In file included from covmatrix_funs.h:9, from onepass.h:8, from vecchia_loglik_grad_info.cpp:8: covmatrix_funs_01.h: In function ‘arma::cube d_exponential_isotropic(arma::vec, arma::mat)’: covmatrix_funs_01.h:108:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 108 | for(int j=0; j >&, arma::vec, double, double, double, int, double, bool)’: src_gathered.cpp:929:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 929 | for (int i=0;i= X.n_cols)){ | ~~~~~^~~~~~~~~~~ ver1_nonlinear.cpp:97:7: warning: unused variable ‘P’ [-Wunused-variable] 97 | int P = X.n_cols; | ^ ver1_nonlinear.cpp: In function ‘Rcpp::List dt_rpca(arma::mat&, double, double, int, double)’: ver1_nonlinear.cpp:394:7: warning: unused variable ‘N’ [-Wunused-variable] 394 | int N = X.n_rows; | ^ ver1_nonlinear.cpp:395:7: warning: unused variable ‘P’ [-Wunused-variable] 395 | int P = X.n_cols; | ^ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_utility.cpp -o ver1_utility.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rdimtools.so RcppExports.o Rdimtools_auxiliary.o example_class.o methods_estimation.o methods_handytools.o methods_linear.o methods_nonlinear.o ver1_computation.o ver1_feature.o ver1_linear.o ver1_nonlinear.o ver1_utility.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptVvDJg/R.INSTALL206aac2e6fc88a/Rdimtools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rdimtools/00new/Rdimtools/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdimtools) begin installing package ‘spinifex’ * installing *source* package ‘spinifex’ ... ** this is package ‘spinifex’ version ‘0.3.8’ ** package ‘spinifex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spinifex) checking tourr_1.2.6.tar.gz ... checking detourr_0.1.0.tar.gz ... checking ferrn_0.1.0.tar.gz ... checking lionfish_1.0.27.tar.gz ... checking loon.tourr_0.1.4.tar.gz ... checking PPbigdata_1.0.0.tar.gz ... checking spinebil_0.1.6.tar.gz ... checking spinifex_0.3.8.tar.gz ... checking woylier_0.0.9.tar.gz ... checking cheem_0.4.0.0.tar.gz ... checking langevitour_0.8.1.tar.gz ... checking geozoo_0.5.1.tar.gz ... checking mulgar_1.0.5.tar.gz ... checking REPPlab_0.9.6.tar.gz ... Depends: Package: tourr Depends: R (>= 4.1.0) Imports: MASS, tibble, dplyr, stats, utils, grDevices, ash, energy, mgcv, geozoo, cassowaryr, minerva Timings: user system elapsed tourr 53.213 5.174 78.179 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 3 10 Check results summary: tourr ... OK rdepends_cheem ... OK rdepends_detourr ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_ferrn ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_geozoo ... OK rdepends_langevitour ... OK rdepends_lionfish ... OK rdepends_loon.tourr ... NOTE * checking Rd cross-references ... NOTE rdepends_mulgar ... OK rdepends_PPbigdata ... OK rdepends_REPPlab ... OK rdepends_spinebil ... OK rdepends_spinifex ... OK rdepends_woylier ... OK Check results changes: Package: REPPlab Check: CRAN incoming feasibility Old result: NOTE