downloading reverse dependencies ... downloading CIMTx_1.2.0.tar.gz ... ok downloading ctmle_0.1.2.tar.gz ... ok downloading twoStageDesignTMLE_1.0.1.2.tar.gz ... ok downloading AIPW_0.6.9.2.tar.gz ... ok downloading bartCause_1.0-9.tar.gz ... ok downloading ltmle_1.3-0.tar.gz ... ok installing dependencies ‘stan4bart’, ‘tmle’, ‘WeightedROC’ begin installing package ‘WeightedROC’ begin installing package ‘tmle’ begin installing package ‘stan4bart’ * installing *source* package ‘WeightedROC’ ... ** this is package ‘WeightedROC’ version ‘2020.1.31’ ** package ‘WeightedROC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WeightedROC) * installing *source* package ‘tmle’ ... ** this is package ‘tmle’ version ‘2.1.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tmle) * installing *source* package ‘stan4bart’ ... ** this is package ‘stan4bart’ version ‘0.0-10’ ** package ‘stan4bart’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for g++-15 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-15 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether g++-15 -std=gnu++17 accepts -g... (cached) yes checking for g++-15 -std=gnu++17 option to enable C++11 features... (cached) none needed checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc-15 checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for x86 cpuid output... unknown checking for x86-AVX xgetbv output... unknown checking for x86 cpuid 0x00000000 output... 14:756e6547:6c65746e:49656e69 checking for x86 cpuid 0x00000001 output... 406f1:29200800:7ffefbff:bfebfbff checking whether SSE2 is supported by the processor... yes checking whether SSE2 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse2... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking size of size_t... 8 checking alignment of void*... 8 checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for working posix_memalign... yes checking for ffs... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGZQpPE/R.INSTALL17a6b06eb8d6c1/stan4bart/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c bart_util.cpp -o bart_util.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc_adaptiveRadixTree.c -o misc_adaptiveRadixTree.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc_string.c -o misc_string.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rc_bounds.c -o rc_bounds.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rc_util.c -o rc_util.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c stan_sampler.cpp -o stan_sampler.o In file included from include/stan/model/model_header.hpp:15, from stan_files/continuous.hpp:43, from stan_sampler.cpp:16: include/stan/model/model_base_crtp.hpp:93:20: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(Eigen::Matrix, -1, 1>&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 93 | inline math::var log_prob(Eigen::Matrix& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:88:17: warning: ‘double stan::model::model_base_crtp::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 88 | inline double log_prob(Eigen::VectorXd& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:149:20: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(std::vector, std::allocator > >&, std::vector&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 149 | inline math::var log_prob(std::vector& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:144:17: warning: ‘double stan::model::model_base_crtp::log_prob(std::vector&, std::vector&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 144 | inline double log_prob(std::vector& theta, std::vector& theta_i, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:133:8: warning: ‘void stan::model::model_base_crtp::write_array(boost::random::ecuyer1988&, Eigen::VectorXd&, Eigen::VectorXd&, bool, bool, std::ostream*) const [with M = continuous_model_namespace::continuous_model; boost::random::ecuyer1988 = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 133 | void write_array(boost::ecuyer1988& rng, Eigen::VectorXd& theta, | ^~~~~~~~~~~ stan_files/continuous.hpp:3338:17: note: by ‘void continuous_model_namespace::continuous_model::write_array(RNG&, Eigen::Matrix&, Eigen::Matrix&, bool, bool, std::ostream*) const’ 3338 | inline void write_array(RNG& base_rng, | ^~~~~~~~~~~ include/stan/model/model_base_crtp.hpp:195:8: warning: ‘void stan::model::model_base_crtp::write_array(boost::random::ecuyer1988&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with M = continuous_model_namespace::continuous_model; boost::random::ecuyer1988 = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 195 | void write_array(boost::ecuyer1988& rng, std::vector& theta, | ^~~~~~~~~~~ stan_files/continuous.hpp:3338:17: note: by ‘void continuous_model_namespace::continuous_model::write_array(RNG&, Eigen::Matrix&, Eigen::Matrix&, bool, bool, std::ostream*) const’ 3338 | inline void write_array(RNG& base_rng, | ^~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o stan4bart.so bart_util.o init.o misc_adaptiveRadixTree.o misc_string.o rc_bounds.o rc_util.o stan_sampler.o -L/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGZQpPE/R.INSTALL17a6b06eb8d6c1/stan4bart/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stan4bart/00new/stan4bart/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stan4bart) checking tmle_2.1.1.tar.gz ... checking CIMTx_1.2.0.tar.gz ... checking ctmle_0.1.2.tar.gz ... checking twoStageDesignTMLE_1.0.1.2.tar.gz ... checking AIPW_0.6.9.2.tar.gz ... checking bartCause_1.0-9.tar.gz ... checking ltmle_1.3-0.tar.gz ... Depends: Package: tmle Depends: glmnet, SuperLearner (>= 2.0) Timings: user system elapsed tmle 47.108 4.895 54.298 Results: Check status summary: OK Source packages 1 Reverse depends 6 Check results summary: tmle ... OK rdepends_AIPW ... OK rdepends_bartCause ... OK rdepends_CIMTx ... OK rdepends_ctmle ... OK rdepends_ltmle ... OK rdepends_twoStageDesignTMLE ... OK Check results changes: Package: ctmle Check: CRAN incoming feasibility Old result: NOTE