* using log directory 'd:/RCompile/CRANincoming/R-devel/tml.Rcheck'
* using R Under development (unstable) (2025-04-16 r88149 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'tml/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'tml' version '0.1.0'
* checking CRAN incoming feasibility ... ERROR
Maintainer: 'Yunro Chung <yunro.chung@asu.edu>'

New submission

Conflicting package names (submitted: tml, existing: TML [https://bioconductor.statistik.tu-dortmund.de/cran])

Conflicting package names (submitted: tml, existing: TML [CRAN archive])

Possibly misspelled words in DESCRIPTION:
  classifcation (14:32)

The Title field should be in title case. Current version is:
  'Treed machine learning model for personalized prediction and subgroup identification'
In title case that is:
  'Treed Machine Learning Model for Personalized Prediction and Subgroup Identification'

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tml' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
c:
  function(...)
c.lasso:
  function(y, x)

c:
  function(...)
c.rf:
  function(y, x)

c:
  function(...)
c.lasso.predict:
  function(fit, newx)

c:
  function(...)
c.svm.predict:
  function(fit, newx)

c:
  function(...)
c.rf.predict:
  function(fit, newx)

c:
  function(...)
c.svm:
  function(y, x, kernel)
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'tml.Rd':
  \examples lines wider than 100 characters:
     #   1) write two functions: c.xx & c.xx.predict (or b.xx & b.xx.predict) if y is continuous (or binary)

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 2 NOTEs