downloading reverse dependencies ‘bookdown’, ‘DQAstats’, ‘exams.forge’, ‘genetic.algo.optimizeR’, ‘ggdiagram’, ‘glioblastomaEHRsData’, ‘oldr’, ‘R3port’, ‘rjtools’, ‘rmarkdown’, ‘rticles’, ‘texor’, ‘texPreview’, ‘worcs’, ‘xdvir’, ‘activAnalyzer’, ‘agrobox’, ‘aldvmm’, ‘biodosetools’, ‘caracas’, ‘chipPCR’, ‘collatz’, ‘ctsem’, ‘dimRed’, ‘emburden’, ‘exams’, ‘fcaR’, ‘fixest’, ‘ggtikz’, ‘huxtable’, ‘inlcolor’, ‘journalabbr’, ‘jubilee’, ‘kableExtra’, ‘knitr’, ‘latexdiffr’, ‘latrend’, ‘litedown’, ‘modelsummary’, ‘QurvE’, ‘repoRter.nih’, ‘rUM’, ‘scbursts’, ‘shinyInvoice’, ‘SoilR’, ‘spectrolab’, ‘ssdtools’, ‘summata’, ‘sumvar’, ‘tablet’, ‘TAD’, ‘TDCM’, ‘teal.reporter’, ‘TeXCheckR’, ‘tinytable’, ‘VedicDateTime’, ‘VsusP’, ‘WebAnalytics’, ‘xfun’, ‘xtable’ trying URL 'file:///data/Repositories/CRAN/src/contrib/bookdown_0.46.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/DQAstats_0.3.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/exams.forge_1.0.13.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/genetic.algo.optimizeR_0.3.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ggdiagram_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/glioblastomaEHRsData_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/oldr_0.2.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/R3port_0.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rjtools_1.0.18.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rmarkdown_2.31.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rticles_0.27.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/texor_1.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/texPreview_2.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/worcs_0.1.20.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/xdvir_0.2-0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/activAnalyzer_2.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/agrobox_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/aldvmm_0.9.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/biodosetools_3.7.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/caracas_2.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/chipPCR_1.0-2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/collatz_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ctsem_3.10.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/dimRed_0.2.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/emburden_0.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/exams_2.4-3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fcaR_1.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fixest_0.14.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ggtikz_0.1.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/huxtable_5.8.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/inlcolor_1.0.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/journalabbr_0.4.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/jubilee_0.3.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/kableExtra_1.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/knitr_1.51.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/latexdiffr_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/latrend_1.6.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/litedown_0.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/modelsummary_2.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/QurvE_1.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/repoRter.nih_0.1.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rUM_2.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/scbursts_1.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shinyInvoice_0.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SoilR_1.2.107.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/spectrolab_0.0.19.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ssdtools_2.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/summata_0.11.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sumvar_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tablet_0.7.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TAD_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TDCM_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/teal.reporter_0.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TeXCheckR_0.8.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tinytable_0.16.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/VedicDateTime_0.1.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/VsusP_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/WebAnalytics_0.9.14.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/xfun_0.57.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/xtable_1.8-8.tar.gz' installing dependencies ‘arrowheadr’, ‘bayesreg’, ‘bbw’, ‘biocViews’, ‘cccd’, ‘cleanrmd’, ‘clusterCrit’, ‘cOde’, ‘connectapi’, ‘coRanking’, ‘crimCV’, ‘csv’, ‘DataExplorer’, ‘diagis’, ‘diffusionMap’, ‘distill’, ‘DIZtools’, ‘DIZutils’, ‘DRR’, ‘exams’, ‘fractional’, ‘ftExtra’, ‘funFEM’, ‘ggarrow’, ‘gggrid’, ‘gridBezier’, ‘gtExtras’, ‘hexView’, ‘hutils’, ‘katex’, ‘latexpdf’, ‘lcmm’, ‘marquee’, ‘mblm’, ‘mclustcomp’, ‘missRanger’, ‘mixAK’, ‘mize’, ‘mle.tools’, ‘MuMIn’, ‘nlme’, ‘otelsdk’, ‘pandoc’, ‘papaja’, ‘pcaL1’, ‘PhysicalActivity’, ‘prereg’, ‘ptw’, ‘qpcR’, ‘Rdatasets’, ‘RDML’, ‘rebib’, ‘ResourceSelection’, ‘rhino’, ‘rjtools’, ‘rtables.officer’, ‘signs’, ‘simstandard’, ‘simTool’, ‘sparkline’, ‘spork’, ‘ssddata’, ‘stranslate’, ‘summarytools’, ‘svgPanZoom’, ‘swephR’, ‘tarchetypes’, ‘teal.code’, ‘teal.data’, ‘tidySEM’, ‘tidytable’, ‘tinter’, ‘tinytex’, ‘tth’, ‘uaparserjs’, ‘universals’, ‘yamlet’ also installing the dependencies ‘cleaR’, ‘RJDBC’, ‘RPresto’, ‘tinylabels’, ‘rmdfiltr’, ‘pipeR’, ‘CVST’, ‘box.linters’, ‘box.lsp’, ‘encode’, ‘pgdraw’ begin installing package ‘cleaR’ begin installing package ‘RJDBC’ begin installing package ‘RPresto’ begin installing package ‘tinylabels’ begin installing package ‘tinytex’ begin installing package ‘pipeR’ begin installing package ‘CVST’ begin installing package ‘box.linters’ begin installing package ‘box.lsp’ begin installing package ‘encode’ begin installing package ‘pgdraw’ begin installing package ‘stranslate’ begin installing package ‘biocViews’ begin installing package ‘arrowheadr’ begin installing package ‘ggarrow’ begin installing package ‘signs’ begin installing package ‘tinter’ begin installing package ‘marquee’ begin installing package ‘simstandard’ begin installing package ‘summarytools’ begin installing package ‘nlme’ begin installing package ‘katex’ begin installing package ‘rebib’ begin installing package ‘tarchetypes’ begin installing package ‘missRanger’ begin installing package ‘hexView’ begin installing package ‘gridBezier’ begin installing package ‘gggrid’ * installing *source* package ‘cleaR’ ... ** this is package ‘cleaR’ version ‘0.0.4’ ** package ‘cleaR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cleaR) begin installing package ‘PhysicalActivity’ * installing *source* package ‘encode’ ... ** this is package ‘encode’ version ‘0.3.7’ ** package ‘encode’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (encode) begin installing package ‘ptw’ * installing *source* package ‘missRanger’ ... ** this is package ‘missRanger’ version ‘2.6.1’ ** package ‘missRanger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missRanger) begin installing package ‘cOde’ * installing *source* package ‘pipeR’ ... ** this is package ‘pipeR’ version ‘0.6.1.3’ ** package ‘pipeR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pipeR) begin installing package ‘mize’ * installing *source* package ‘box.lsp’ ... ** this is package ‘box.lsp’ version ‘0.1.4’ ** package ‘box.lsp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (box.lsp) begin installing package ‘diagis’ * installing *source* package ‘gridBezier’ ... ** this is package ‘gridBezier’ version ‘1.1-1’ ** package ‘gridBezier’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridBezier) begin installing package ‘cccd’ * installing *source* package ‘arrowheadr’ ... ** this is package ‘arrowheadr’ version ‘1.0.2’ ** package ‘arrowheadr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arrowheadr) begin installing package ‘coRanking’ * installing *source* package ‘tinylabels’ ... ** this is package ‘tinylabels’ version ‘0.2.5’ ** package ‘tinylabels’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinylabels) begin installing package ‘diffusionMap’ * installing *source* package ‘hexView’ ... ** this is package ‘hexView’ version ‘0.3-4’ ** package ‘hexView’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hexView) begin installing package ‘pcaL1’ * installing *source* package ‘tinter’ ... ** this is package ‘tinter’ version ‘0.1.0’ ** package ‘tinter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinter) begin installing package ‘tth’ * installing *source* package ‘rebib’ ... ** this is package ‘rebib’ version ‘0.5.0’ ** package ‘rebib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rebib) begin installing package ‘fractional’ * installing *source* package ‘katex’ ... ** this is package ‘katex’ version ‘1.5.0’ ** package ‘katex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (katex) begin installing package ‘connectapi’ * installing *source* package ‘tinytex’ ... ** this is package ‘tinytex’ version ‘0.59’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytex) begin installing package ‘tidytable’ * installing *source* package ‘stranslate’ ... ** this is package ‘stranslate’ version ‘0.1.3’ ** package ‘stranslate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stranslate) begin installing package ‘sparkline’ * installing *source* package ‘signs’ ... ** this is package ‘signs’ version ‘0.1.2’ ** package ‘signs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (signs) begin installing package ‘otelsdk’ * installing *source* package ‘simstandard’ ... ** this is package ‘simstandard’ version ‘0.6.3’ ** package ‘simstandard’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simstandard) begin installing package ‘crimCV’ * installing *source* package ‘box.linters’ ... ** this is package ‘box.linters’ version ‘0.10.7’ ** package ‘box.linters’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ! The packages {treesitter} and {treesitter.r} are required by namespaced_function_calls(). Please install these packages if you want to use namespaced_function_calls(). They require R version >= 4.3.0. ! The packages {treesitter} and {treesitter.r} are required by namespaced_function_calls(). Please install these packages if you want to use namespaced_function_calls(). They require R version >= 4.3.0. ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (box.linters) begin installing package ‘mclustcomp’ * installing *source* package ‘cOde’ ... ** this is package ‘cOde’ version ‘1.1.1’ ** package ‘cOde’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cOde) begin installing package ‘simTool’ * installing *source* package ‘PhysicalActivity’ ... ** this is package ‘PhysicalActivity’ version ‘0.2-4’ ** package ‘PhysicalActivity’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PhysicalActivity) begin installing package ‘clusterCrit’ * installing *source* package ‘gggrid’ ... ** this is package ‘gggrid’ version ‘0.2-0’ ** package ‘gggrid’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gggrid) begin installing package ‘gtExtras’ * installing *source* package ‘RJDBC’ ... ** this is package ‘RJDBC’ version ‘0.2-10’ ** package ‘RJDBC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RJDBC) begin installing package ‘pandoc’ * installing *source* package ‘cccd’ ... ** this is package ‘cccd’ version ‘1.6’ ** package ‘cccd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cccd) begin installing package ‘Rdatasets’ * installing *source* package ‘sparkline’ ... ** this is package ‘sparkline’ version ‘2.0’ ** package ‘sparkline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparkline) begin installing package ‘ssddata’ * installing *source* package ‘coRanking’ ... ** this is package ‘coRanking’ version ‘0.2.5’ ** package ‘coRanking’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpROsiwV/R.INSTALLb44673f1681bd/coRanking/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c coranking.cpp -o coranking.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c coranking_main.cpp -o coranking_main.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o coRanking.so coranking.o coranking_main.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpROsiwV/R.INSTALLb44673f1681bd/coRanking/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-coRanking/00new/coRanking/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (coRanking) begin installing package ‘universals’ * installing *source* package ‘ptw’ ... ** this is package ‘ptw’ version ‘1.9-17’ ** package ‘ptw’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpt9zpi8/R.INSTALLb4394158c9f31/ptw/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c approx.c -o approx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smth.c -o smth.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wcc.c -o wcc.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wccStick.c -o wccStick.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ptw.so approx.o register.o smth.o wcc.o wccStick.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpt9zpi8/R.INSTALLb4394158c9f31/ptw/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ptw/00new/ptw/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ptw) begin installing package ‘mle.tools’ * installing *source* package ‘Rdatasets’ ... ** this is package ‘Rdatasets’ version ‘0.0.1’ ** package ‘Rdatasets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdatasets) begin installing package ‘ResourceSelection’ * installing *source* package ‘universals’ ... ** this is package ‘universals’ version ‘0.0.5’ ** package ‘universals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (universals) begin installing package ‘latexpdf’ * installing *source* package ‘mle.tools’ ... ** this is package ‘mle.tools’ version ‘1.0.0’ ** package ‘mle.tools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mle.tools) begin installing package ‘csv’ * installing *source* package ‘simTool’ ... ** this is package ‘simTool’ version ‘1.1.9’ ** package ‘simTool’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simTool) begin installing package ‘mblm’ * installing *source* package ‘pandoc’ ... ** this is package ‘pandoc’ version ‘0.2.0’ ** package ‘pandoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pandoc) begin installing package ‘rtables.officer’ * installing *source* package ‘CVST’ ... ** this is package ‘CVST’ version ‘0.2-3’ ** package ‘CVST’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CVST) begin installing package ‘teal.code’ * installing *source* package ‘mize’ ... ** this is package ‘mize’ version ‘0.2.5’ ** package ‘mize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mize) begin installing package ‘hutils’ * installing *source* package ‘ggarrow’ ... ** this is package ‘ggarrow’ version ‘0.1.1’ ** package ‘ggarrow’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggarrow) begin installing package ‘swephR’ * installing *source* package ‘diffusionMap’ ... ** this is package ‘diffusionMap’ version ‘1.2.0’ ** package ‘diffusionMap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffusionMap) begin installing package ‘uaparserjs’ * installing *source* package ‘tarchetypes’ ... ** this is package ‘tarchetypes’ version ‘0.14.1’ ** package ‘tarchetypes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tarchetypes) begin installing package ‘DIZtools’ * installing *source* package ‘ssddata’ ... ** this is package ‘ssddata’ version ‘1.0.0’ ** package ‘ssddata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssddata) begin installing package ‘RDML’ * installing *source* package ‘mblm’ ... ** this is package ‘mblm’ version ‘0.12.1’ ** package ‘mblm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mblm) begin installing package ‘DRR’ * installing *source* package ‘pgdraw’ ... ** this is package ‘pgdraw’ version ‘1.1’ ** package ‘pgdraw’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLmZSy8/R.INSTALLb408aef7c865/pgdraw/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_pgdraw.cpp -o rcpp_pgdraw.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o pgdraw.so RcppExports.o rcpp_pgdraw.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLmZSy8/R.INSTALLb408aef7c865/pgdraw/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pgdraw/00new/pgdraw/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pgdraw) begin installing package ‘rhino’ * installing *source* package ‘csv’ ... ** this is package ‘csv’ version ‘0.6.2’ ** package ‘csv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (csv) begin installing package ‘bayesreg’ * installing *source* package ‘tth’ ... ** this is package ‘tth’ version ‘4.16-0’ ** package ‘tth’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTxE8VT/R.INSTALLb44ed25109d9b/tth/src' gcc-15 -std=gnu17 -w -o tth tth.c gcc-15 -std=gnu17 -w -o ttm ttm.c make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTxE8VT/R.INSTALLb44ed25109d9b/tth/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-tth/00new/tth ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tth) begin installing package ‘rmdfiltr’ * installing *source* package ‘latexpdf’ ... ** this is package ‘latexpdf’ version ‘0.1.8’ ** package ‘latexpdf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (latexpdf) begin installing package ‘exams’ * installing *source* package ‘tidytable’ ... ** this is package ‘tidytable’ version ‘0.11.2’ ** package ‘tidytable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidytable) begin installing package ‘DataExplorer’ * installing *source* package ‘clusterCrit’ ... ** this is package ‘clusterCrit’ version ‘1.3.0’ ** package ‘clusterCrit’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to accept ISO C89... none needed checking whether we are using the GNU Fortran compiler... yes checking whether gfortran-15 accepts -g... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmoBH9E/R.INSTALLb4aef7b3023dc/clusterCrit/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c criteria.c -o criteria.o criteria.c: In function ‘cluc_errorMsg’: criteria.c:331:17: warning: unused variable ‘msg’ [-Wunused-variable] 331 | char msg[128]; | ^~~ gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c norms.f95 -o norms.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.f95 -o matrix.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c critUtils.f95 -o critUtils.o critUtils.f95:847:26: 847 | sConc(1) = sConc(1) + ip - 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:851:29: 851 | sConc(2) = sConc(2) + (sPNum(1) - iw + 1) | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:855:29: 855 | sConc(1) = sConc(1) + 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c indices.f95 -o indices.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c critCalc.f95 -o critCalc.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o clusterCrit.so criteria.o norms.o matrix.o critUtils.o indices.o critCalc.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmoBH9E/R.INSTALLb4aef7b3023dc/clusterCrit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-clusterCrit/00new/clusterCrit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clusterCrit) begin installing package ‘distill’ * installing *source* package ‘pcaL1’ ... ** this is package ‘pcaL1’ version ‘1.5.9’ ** package ‘pcaL1’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-15 -E ./configure: line 2996: -n: command not found checking for pkg-config... /usr/bin/pkg-config configure: set compile and link flags according to pkg-config configure: compile flags are -I/usr/include/coin configure: link flags are -lClpSolver -lClp -lCoinUtils -lbz2 -lz -llapack -lblas -lm checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for Clp_C_Interface.h... yes checking for library containing Clp_newModel... none required checking for library containing Clp_setRowName... none required configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJHHfPX/R.INSTALLb44cf5fac7f52/pcaL1/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c l1pca.c -o l1pca.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c l1pca_R.c -o l1pca_R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c l1pcahp.c -o l1pcahp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c l1pcahp_R.c -o l1pcahp_R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c l1pcastar.c -o l1pcastar.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c l1pcastar_R.c -o l1pcastar_R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c l1projection.c -o l1projection.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c l1projection_R.c -o l1projection_R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pcal1.c -o pcal1.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pcal1_R.c -o pcal1_R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pcalp.c -o pcalp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pcalp_R.c -o pcalp_R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sharpel1pca.c -o sharpel1pca.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sharpel1pca_R.c -o sharpel1pca_R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sharpel1rs.c -o sharpel1rs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sharpel1rs_R.c -o sharpel1rs_R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparsel1pca.c -o sparsel1pca.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparsel1pca_R.c -o sparsel1pca_R.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o pcaL1.so init.o l1pca.o l1pca_R.o l1pcahp.o l1pcahp_R.o l1pcastar.o l1pcastar_R.o l1projection.o l1projection_R.o pcal1.o pcal1_R.o pcalp.o pcalp_R.o sharpel1pca.o sharpel1pca_R.o sharpel1rs.o sharpel1rs_R.o sparsel1pca.o sparsel1pca_R.o -lClpSolver -lClp -lCoinUtils -lbz2 -lz -llapack -lblas -lm -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJHHfPX/R.INSTALLb44cf5fac7f52/pcaL1/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pcaL1/00new/pcaL1/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcaL1) begin installing package ‘cleanrmd’ * installing *source* package ‘biocViews’ ... ** this is package ‘biocViews’ version ‘1.79.4’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biocViews) begin installing package ‘svgPanZoom’ * installing *source* package ‘RPresto’ ... ** this is package ‘RPresto’ version ‘1.4.8’ ** package ‘RPresto’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RPresto) begin installing package ‘prereg’ * installing *source* package ‘teal.code’ ... ** this is package ‘teal.code’ version ‘0.7.1’ ** package ‘teal.code’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.code) begin installing package ‘qpcR’ * installing *source* package ‘rmdfiltr’ ... ** this is package ‘rmdfiltr’ version ‘0.1.5’ ** package ‘rmdfiltr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmdfiltr) begin installing package ‘ftExtra’ * installing *source* package ‘DIZtools’ ... ** this is package ‘DIZtools’ version ‘1.0.3’ ** package ‘DIZtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DIZtools) begin installing package ‘papaja’ * installing *source* package ‘uaparserjs’ ... ** this is package ‘uaparserjs’ version ‘0.3.6’ ** package ‘uaparserjs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (uaparserjs) begin installing package ‘spork’ * installing *source* package ‘rhino’ ... ** this is package ‘rhino’ version ‘1.11.0’ ** package ‘rhino’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhino) begin installing package ‘teal.data’ * installing *source* package ‘hutils’ ... ** this is package ‘hutils’ version ‘2.0.0’ ** package ‘hutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hutils) * installing *source* package ‘svgPanZoom’ ... ** this is package ‘svgPanZoom’ version ‘0.3.4’ ** package ‘svgPanZoom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (svgPanZoom) * installing *source* package ‘fractional’ ... ** this is package ‘fractional’ version ‘0.1.3’ ** package ‘fractional’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNoWmJZ/R.INSTALLb45d93bcca8ae/fractional/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fractional.cpp -o fractional.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fractional.so RcppExports.o fractional.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNoWmJZ/R.INSTALLb45d93bcca8ae/fractional/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fractional/00new/fractional/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fractional) * installing *source* package ‘cleanrmd’ ... ** this is package ‘cleanrmd’ version ‘0.1.1’ ** package ‘cleanrmd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cleanrmd) * installing *source* package ‘prereg’ ... ** this is package ‘prereg’ version ‘0.6.0’ ** package ‘prereg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prereg) * installing *source* package ‘ResourceSelection’ ... ** this is package ‘ResourceSelection’ version ‘0.3-6’ ** package ‘ResourceSelection’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ResourceSelection) * installing *source* package ‘bayesreg’ ... ** this is package ‘bayesreg’ version ‘1.3’ ** package ‘bayesreg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bayesreg) * installing *source* package ‘connectapi’ ... ** this is package ‘connectapi’ version ‘0.11.1’ ** package ‘connectapi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (connectapi) * installing *source* package ‘gtExtras’ ... ** this is package ‘gtExtras’ version ‘0.6.2’ ** package ‘gtExtras’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtExtras) * installing *source* package ‘rtables.officer’ ... ** this is package ‘rtables.officer’ version ‘0.1.2’ ** package ‘rtables.officer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtables.officer) * installing *source* package ‘DRR’ ... ** this is package ‘DRR’ version ‘0.0.4’ ** package ‘DRR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DRR) * installing *source* package ‘summarytools’ ... ** this is package ‘summarytools’ version ‘1.1.5’ ** package ‘summarytools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (summarytools) * installing *source* package ‘crimCV’ ... ** this is package ‘crimCV’ version ‘1.0.0’ ** package ‘crimCV’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGh4sSV/R.INSTALLb472e1cfe6017/crimCV/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c crimCV.f90 -o crimCV.o crimCV.f90:554:9: 554 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:405:9: 405 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:374:9: 374 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:1066:2: 1066 | function sddev(np,x) result(out) | ^ Warning: ‘sddev’ defined but not used [-Wunused-function] crimCV.f90:1495:11: 1495 | if (ierr /= 0) then | ^ Warning: ‘*ierr_30(D)’ may be used uninitialized [-Wmaybe-uninitialized] crimCV.f90:2182:11: 2182 | if (ierr /= 0) then | ^ Warning: ‘*ierr_30(D)’ may be used uninitialized [-Wmaybe-uninitialized] gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c packagename_init.c -o packagename_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrap.c -o wrap.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o crimCV.so crimCV.o packagename_init.o wrap.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGh4sSV/R.INSTALLb472e1cfe6017/crimCV/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-crimCV/00new/crimCV/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crimCV) * installing *source* package ‘distill’ ... ** this is package ‘distill’ version ‘1.6’ ** package ‘distill’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distill) begin installing package ‘rjtools’ * installing *source* package ‘ftExtra’ ... ** this is package ‘ftExtra’ version ‘0.6.4’ ** package ‘ftExtra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ftExtra) * installing *source* package ‘DataExplorer’ ... ** this is package ‘DataExplorer’ version ‘0.9.0’ ** package ‘DataExplorer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DataExplorer) * installing *source* package ‘teal.data’ ... ** this is package ‘teal.data’ version ‘0.8.0’ ** package ‘teal.data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.data) * installing *source* package ‘spork’ ... ** this is package ‘spork’ version ‘0.3.5’ ** package ‘spork’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spork) begin installing package ‘yamlet’ * installing *source* package ‘papaja’ ... ** this is package ‘papaja’ version ‘0.1.4’ ** package ‘papaja’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (papaja) * installing *source* package ‘rjtools’ ... ** this is package ‘rjtools’ version ‘1.0.18.1’ ** package ‘rjtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rjtools) * installing *source* package ‘qpcR’ ... ** this is package ‘qpcR’ version ‘1.4-2’ ** package ‘qpcR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLhHexW/R.INSTALLb55d830930c01/qpcR/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smth.c -o smth.o 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o qpcR.so registerDynamicSymbol.o smth.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLhHexW/R.INSTALLb55d830930c01/qpcR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-qpcR/00new/qpcR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qpcR) * installing *source* package ‘nlme’ ... ** this is package ‘nlme’ version ‘3.1-169’ ** package ‘nlme’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp89nLqr/R.INSTALLb40b7640efd66/nlme/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c chol.f -o chol.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c corStruct.c -o corStruct.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gnls.c -o gnls.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nlOptimizer.c -o nlOptimizer.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nlme.c -o nlme.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nlmefit.c -o nlmefit.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pdMat.c -o pdMat.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pythag.c -o pythag.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c rs.f -o rs.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp89nLqr/R.INSTALLb40b7640efd66/nlme/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-nlme/00new/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlme) begin installing package ‘bbw’ begin installing package ‘funFEM’ begin installing package ‘tidySEM’ begin installing package ‘mixAK’ begin installing package ‘lcmm’ begin installing package ‘MuMIn’ begin installing package ‘DIZutils’ * installing *source* package ‘DIZutils’ ... ** this is package ‘DIZutils’ version ‘0.1.3’ ** package ‘DIZutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DIZutils) * installing *source* package ‘exams’ ... ** this is package ‘exams’ version ‘2.4-3’ ** package ‘exams’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (exams) * installing *source* package ‘bbw’ ... ** this is package ‘bbw’ version ‘0.3.1’ ** package ‘bbw’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bbw) * installing *source* package ‘yamlet’ ... ** this is package ‘yamlet’ version ‘1.3.4’ ** package ‘yamlet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yamlet) * installing *source* package ‘funFEM’ ... ** this is package ‘funFEM’ version ‘1.2’ ** package ‘funFEM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (funFEM) * installing *source* package ‘mclustcomp’ ... ** this is package ‘mclustcomp’ version ‘0.3.5’ ** package ‘mclustcomp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiV8klv/R.INSTALLb4a906468734e/mclustcomp/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c auxiliary.cpp -o auxiliary.o auxiliary.cpp: In function ‘Rcpp::List getprobs(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector, int, double)’: auxiliary.cpp:124:10: warning: unused variable ‘maxthr’ [-Wunused-variable] 124 | double maxthr = max(altthr); | ^~~~~~ auxiliary.cpp:125:7: warning: unused variable ‘warningint’ [-Wunused-variable] 125 | int warningint = 0; // 1<-Px, 2<-Py, 3<-Pxy | ^~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c auxiliary_arma.cpp -o auxiliary_arma.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mclustcomp.so RcppExports.o auxiliary.o auxiliary_arma.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiV8klv/R.INSTALLb4a906468734e/mclustcomp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mclustcomp/00new/mclustcomp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mclustcomp) * installing *source* package ‘RDML’ ... ** this is package ‘RDML’ version ‘1.1’ ** package ‘RDML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RDML) * installing *source* package ‘MuMIn’ ... ** this is package ‘MuMIn’ version ‘1.48.19’ ** package ‘MuMIn’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MuMIn) * installing *source* package ‘diagis’ ... ** this is package ‘diagis’ version ‘0.2.3’ ** package ‘diagis’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKMPnBR/R.INSTALLb43f56cfe2b45/diagis/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summary.cpp -o summary.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summary_mat.cpp -o summary_mat.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summary_vec.cpp -o summary_vec.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o diagis.so RcppExports.o summary.o summary_mat.o summary_vec.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKMPnBR/R.INSTALLb43f56cfe2b45/diagis/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-diagis/00new/diagis/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diagis) * installing *source* package ‘swephR’ ... ** this is package ‘swephR’ version ‘0.3.2’ ** package ‘swephR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuIjxc4/R.INSTALLb526b17a95455/swephR/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c swephR.cpp -o swephR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swedate.c -o libswe/swedate.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swehouse.c -o libswe/swehouse.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swejpl.c -o libswe/swejpl.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swemmoon.c -o libswe/swemmoon.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swemplan.c -o libswe/swemplan.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/sweph.c -o libswe/sweph.o libswe/sweph.c: In function ‘swe_get_library_path’: libswe/sweph.c:268:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 268 | if (dladdr((void *)swe_version, &dli) != 0) { | ^ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swephlib.c -o libswe/swephlib.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swecl.c -o libswe/swecl.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swehel.c -o libswe/swehel.o ar rcs libswe.a libswe/swedate.o libswe/swehouse.o libswe/swejpl.o libswe/swemmoon.o libswe/swemplan.o libswe/sweph.o libswe/swephlib.o libswe/swecl.o libswe/swehel.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o swephR.so RcppExports.o swephR.o -L. -lswe -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuIjxc4/R.INSTALLb526b17a95455/swephR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-swephR/00new/swephR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (swephR) * installing *source* package ‘tidySEM’ ... ** this is package ‘tidySEM’ version ‘0.2.10’ ** package ‘tidySEM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidySEM) * installing *source* package ‘marquee’ ... ** this is package ‘marquee’ version ‘1.2.1’ ** package ‘marquee’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKK7iKD/R.INSTALLb40ab518e65c1/marquee/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c marquee.cpp -o marquee.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c md4c.c -o md4c.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o marquee.so cpp11.o marquee.o md4c.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKK7iKD/R.INSTALLb40ab518e65c1/marquee/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-marquee/00new/marquee/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (marquee) * installing *source* package ‘mixAK’ ... ** this is package ‘mixAK’ version ‘5.8’ ** package ‘mixAK’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpw0AIuI/R.INSTALLb5af52a02b079/mixAK/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00mixAK_init.cpp -o 00mixAK_init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_BLAS.cpp -o AK_BLAS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_BSTAT.cpp -o AK_BSTAT.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_LAPACK.cpp -o AK_LAPACK.o AK_LAPACK.cpp: In function ‘void AK_LAPACK::MPpinvSP(double*, double*, int*, const int*)’: AK_LAPACK.cpp:1002:17: warning: variable ‘LTp’ set but not used [-Wunused-but-set-variable] 1002 | static int i, LTp, p_p; | ^~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_Utils.cpp -o AK_Utils.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Dirichlet.cpp -o Dist_Dirichlet.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Discrete.cpp -o Dist_Discrete.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_MVN.cpp -o Dist_MVN.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_MVT.cpp -o Dist_MVT.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TMVN.cpp -o Dist_TMVN.o Dist_TMVN.cpp: In function ‘void Dist::rTMVN2(double*, double*, const double*, const double*, const int*, const double*, const double*, const int*, const int*)’: Dist_TMVN.cpp:84:33: warning: variable ‘aP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~ Dist_TMVN.cpp:84:38: warning: variable ‘bP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~ Dist_TMVN.cpp:84:43: warning: variable ‘GzP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~~ Dist_TMVN.cpp:85:21: warning: variable ‘truncP’ set but not used [-Wunused-but-set-variable] 85 | static const int *truncP; | ^~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TNorm.cpp -o Dist_TNorm.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TmixMVN.cpp -o Dist_TmixMVN.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TmixNorm.cpp -o Dist_TmixNorm.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Wishart.cpp -o Dist_Wishart.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_mixMVN.cpp -o Dist_mixMVN.o Dist_mixMVN.cpp: In function ‘void Dist::dmixMVN_R(double*, double*, double*, double*, int*, const double*, const int*, const double*, const int*, const int*)’: Dist_mixMVN.cpp:213:13: warning: unused variable ‘LTnx’ [-Wunused-variable] 213 | const int LTnx = (*nx * (*nx + 1))/2; | ^~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_mixNorm.cpp -o Dist_mixNorm.o Dist_mixNorm.cpp: In function ‘void Dist::dmixNorm_R(double*, const double*, const int*, const double*, const double*, const double*, const int*)’: Dist_mixNorm.cpp:91:7: warning: unused variable ‘k’ [-Wunused-variable] 91 | int k, j; | ^ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance.cpp -o GLMM_Deviance.o GLMM_Deviance.cpp: In function ‘void GLMM::Deviance(double*, double*, double*, double*, double*, double*, double*, double**, int**, double**, double**, double**, double**, double**, int**, int*, double*, int*, double**, int**, double**, double**, double**, double**, double**, int**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*)’: GLMM_Deviance.cpp:140:10: warning: unused variable ‘U2_g’ [-Wunused-variable] 140 | double U2_g[5]; | ^~~~ GLMM_Deviance.cpp:141:10: warning: unused variable ‘H2_g’ [-Wunused-variable] 141 | double H2_g[15]; | ^~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance2.cpp -o GLMM_Deviance2.o GLMM_Deviance2.cpp: In function ‘void GLMM::Deviance2(double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, double*, double**, int**, double**, double**, double**, double**, double**, int**, int*, double*, int*, double**, int**, double**, double**, double**, double**, double**, int**, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*)’: GLMM_Deviance2.cpp:104:28: warning: unused variable ‘bDb’ [-Wunused-variable] 104 | static double log_det_R, bDb, loglik_ik, max_log_pi_ik; | ^~~ GLMM_Deviance2.cpp:130:18: warning: unused variable ‘bscaled_hatP’ [-Wunused-variable] 130 | static double *bscaled_hatP; | ^~~~~~~~~~~~ GLMM_Deviance2.cpp:160:10: warning: unused variable ‘U2_g’ [-Wunused-variable] 160 | double U2_g[5]; | ^~~~ GLMM_Deviance2.cpp:161:10: warning: unused variable ‘H2_g’ [-Wunused-variable] 161 | double H2_g[15]; | ^~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance2Pr_obs.cpp -o GLMM_Deviance2Pr_obs.o GLMM_Deviance2Pr_obs.cpp: In function ‘void GLMM::Deviance2Pr_obs(double*, const double*, const double*, const double*, const int*, const int*)’: GLMM_Deviance2Pr_obs.cpp:34:17: warning: unused variable ‘sum_w_L_ik’ [-Wunused-variable] 34 | static double sum_w_L_ik; | ^~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_MCMC.cpp -o GLMM_MCMC.o GLMM_MCMC.cpp: In function ‘void GLMM_MCMC(double*, int*, const int*, int*, const double*, double*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*)’: GLMM_MCMC.cpp:96:13: warning: unused variable ‘DEBUG’ [-Wunused-variable] 96 | const int DEBUG = 0; | ^~~~~ GLMM_MCMC.cpp:253:17: warning: unused variable ‘h_df’ [-Wunused-variable] 253 | const double *h_df = g_df + 1; | ^~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_NMixRelabel.cpp -o GLMM_NMixRelabel.o GLMM_NMixRelabel.cpp:346:1: warning: ‘/*’ within comment [-Wcomment] 346 | /***** %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% *****/ GLMM_NMixRelabel.cpp: In function ‘void GLMM_NMixRelabel(const int*, const int*, const int*, double*, int*, const int*, const int*, const int*, int*, const double*, double*, const int*, const double*, const int*, const int*, const double*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, int*, int*, int*)’: GLMM_NMixRelabel.cpp:543:5: warning: ‘simpleType’ may be used uninitialized [-Wmaybe-uninitialized] 543 | switch (simpleType){ | ^~~~~~ GLMM_NMixRelabel.cpp:392:7: note: ‘simpleType’ was declared here 392 | int simpleType; | ^~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_PED.cpp -o GLMM_PED.o GLMM_PED.cpp: In function ‘void GLMM_PED(double*, double*, double*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, const int*, int*, const double*, double*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_PED.cpp:123:7: warning: unused variable ‘LT_max_p_fi’ [-Wunused-variable] 123 | int LT_max_p_fi = (max_p_fi * (max_p_fi + 1)) / 2; | ^~~~~~~~~~~ GLMM_PED.cpp:355:7: warning: unused variable ‘max_N_s’ [-Wunused-variable] 355 | int max_N_s = AK_Basic::maxArray(N_s, R); | ^~~~~~~ GLMM_PED.cpp:512:12: warning: unused variable ‘eta_zsrespP’ [-Wunused-variable] 512 | double **eta_zsrespP = R_Calloc(R, double*); | ^~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_copy_shift_eta_meanY_Zresp.cpp -o GLMM_copy_shift_eta_meanY_Zresp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_SZitZiS.cpp -o GLMM_create_SZitZiS.o GLMM_create_SZitZiS.cpp: In function ‘void GLMM::create_SZitZiS(double*, double**, double**, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_SZitZiS.cpp:129:21: warning: ‘SZitZiS_is’ may be used uninitialized [-Wmaybe-uninitialized] 129 | SZitZiS_is++; | ~~~~~~~~~~^~ GLMM_create_SZitZiS.cpp:34:11: note: ‘SZitZiS_is’ was declared here 34 | double *SZitZiS_is, *SZitZiSP; | ^~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_SZitZiS_4longitDA.cpp -o GLMM_create_SZitZiS_4longitDA.o GLMM_create_SZitZiS_4longitDA.cpp: In function ‘void GLMM::create_SZitZiS_4longitDA(double*, double*, double**, double**, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_SZitZiS_4longitDA.cpp:34:41: warning: unused variable ‘SZitZiSP’ [-Wunused-variable] 34 | double *SZitZiS_c_is, *SZitZiS_d_is, *SZitZiSP, *SZitZiS_prev; | ^~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_XtX.cpp -o GLMM_create_XtX.o GLMM_create_XtX.cpp: In function ‘void GLMM::create_XtX(double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_XtX.cpp:109:16: warning: ‘XtX_s’ may be used uninitialized [-Wmaybe-uninitialized] 109 | XtX_s++; | ~~~~~^~ GLMM_create_XtX.cpp:31:11: note: ‘XtX_s’ was declared here 31 | double *XtX_s, *XtXP; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_ZS.cpp -o GLMM_create_ZS.o GLMM_create_ZS.cpp: In function ‘void GLMM::create_ZS(double*, double**, int**, double**, int**, const double*, const int*, const int*, const int*, const int*)’: GLMM_create_ZS.cpp:33:26: warning: unused variable ‘scaleP2’ [-Wunused-variable] 33 | const double *scaleP, *scaleP2; | ^~~~~~~ GLMM_create_ZS.cpp:42:7: warning: unused variable ‘iZS’ [-Wunused-variable] 42 | int iZS = 0; | ^~~ GLMM_create_ZS.cpp:96:31: warning: ‘ZP’ may be used uninitialized [-Wmaybe-uninitialized] 96 | if (*qP) ZrespP[s] = ZP - (*qP - 1); | ~~~^~~~~~~~~~~ GLMM_create_ZS.cpp:31:26: note: ‘ZP’ was declared here 31 | double *ZSP, *Zstart, *ZP; | ^~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_ZiS.cpp -o GLMM_create_ZiS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_dY_meanY.cpp -o GLMM_dY_meanY.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_eta_fixed_random2eta_meanY.cpp -o GLMM_eta_fixed_random2eta_meanY.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_fitted_Bernoulli_Logit.cpp -o GLMM_fitted_Bernoulli_Logit.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_fitted_Poisson_Log.cpp -o GLMM_fitted_Poisson_Log.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_linear_predictors.cpp -o GLMM_linear_predictors.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitDA.cpp -o GLMM_longitDA.o GLMM_longitDA.cpp: In function ‘void GLMM_longitDA(double*, const int*, int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, double*, const int*, const int*, const double*, const int*, const int*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, double*, double*, double*, int*)’: GLMM_longitDA.cpp:63:13: warning: unused variable ‘DEBUG’ [-Wunused-variable] 63 | const int DEBUG = 0; | ^~~~~ GLMM_longitDA.cpp:66:14: warning: unused variable ‘m’ [-Wunused-variable] 66 | int s, cl, m, i, j, k; | ^ GLMM_longitDA.cpp:66:20: warning: unused variable ‘j’ [-Wunused-variable] 66 | int s, cl, m, i, j, k; | ^ GLMM_longitDA.cpp:70:13: warning: unused variable ‘R_I’ [-Wunused-variable] 70 | const int R_I = R * *I; | ^~~ GLMM_longitDA.cpp:162:7: warning: unused variable ‘backs’ [-Wunused-variable] 162 | int backs = 1; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitDA2.cpp -o GLMM_longitDA2.o GLMM_longitDA2.cpp: In function ‘void GLMM_longitDA2(const int*, double*, const int*, int*, const int*, const int*, const int*, const int*, int*, const double*, const int*, const int*, double*, const int*, const int*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*)’: GLMM_longitDA2.cpp:435:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 435 | if (*nonSilent && !(iter_lC % *info) || iter_lC == *keepMCMC_cl){ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ GLMM_longitDA2.cpp:85:14: warning: unused variable ‘m’ [-Wunused-variable] 85 | int s, cl, m, i, j, k; | ^ GLMM_longitDA2.cpp:290:7: warning: unused variable ‘backs’ [-Wunused-variable] 290 | int backs = 1; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitPred_nmix_gauss.cpp -o GLMM_longitPred_nmix_gauss.o GLMM_longitPred_nmix_gauss.cpp: In function ‘void GLMM::longitPred_nmix_gauss(double*, double*, double*, double**, double*, double*, double*, int*, double**, int**, double**, double**, double**, int*, double**, int**, double**, const double*, double**, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*)’: GLMM_longitPred_nmix_gauss.cpp:82:31: warning: unused variable ‘eta_randomP’ [-Wunused-variable] 82 | static double *eta_fixedP, *eta_randomP, *eta_zsP; | ^~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_newData.cpp -o GLMM_newData.o GLMM_newData.cpp: In function ‘void GLMM::newData(double*, int*, double*, double*, double*, double*, double*, double*, double*, const double*, const double*, const int*, const int*, const int*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*)’: GLMM_newData.cpp:47:15: warning: unused variable ‘fname’ [-Wunused-variable] 47 | const char *fname = "GLMM::newData"; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_scale_ZitZi.cpp -o GLMM_scale_ZitZi.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateFixEf.cpp -o GLMM_updateFixEf.o GLMM_updateFixEf.cpp: In function ‘void GLMM::updateFixEf(double*, double*, double*, double*, double*, double*, int*, int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*)’: GLMM_updateFixEf.cpp:72:40: warning: unused variable ‘dworkP’ [-Wunused-variable] 72 | static double *mu_fullP, *Li_fullP, *dworkP, *beta_propP; | ^~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateHyperVars_eps.cpp -o GLMM_updateHyperVars_eps.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateRanEf.cpp -o GLMM_updateRanEf.o GLMM_updateRanEf.cpp:498:5: warning: ‘/*’ within comment [-Wcomment] 498 | /*** +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ***/ GLMM_updateRanEf.cpp: In function ‘void GLMM::updateRanEf(double*, double*, double**, double**, double**, double*, double*, double**, int**, double**, double**, double**, double**, double**, double**, double**, int**, int*, int*, double**, int**, double**, double**, double**, double**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, int**, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_updateRanEf.cpp:76:32: warning: unused variable ‘row’ [-Wunused-variable] 76 | static int s, i, j, k, itmp, row, col; | ^~~ GLMM_updateRanEf.cpp:76:37: warning: unused variable ‘col’ [-Wunused-variable] 76 | static int s, i, j, k, itmp, row, col; | ^~~ GLMM_updateRanEf.cpp:82:88: warning: unused variable ‘Li_full_backupP’ [-Wunused-variable] 82 | static double *bP, *bscaledP, *bscaled_i, *b_i, *eta_random_propP, *mean_Y_d_propP, *Li_full_backupP, *Li_fullP; | ^~~~~~~~~~~~~~~ GLMM_updateRanEf.cpp:82:106: warning: unused variable ‘Li_fullP’ [-Wunused-variable] 82 | static double *bP, *bscaledP, *bscaled_i, *b_i, *eta_random_propP, *mean_Y_d_propP, *Li_full_backupP, *Li_fullP; | ^~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateRanEf_QR.cpp -o GLMM_updateRanEf_QR.o GLMM_updateRanEf_QR.cpp: In function ‘void GLMM::updateRanEf_QR(double*, double*, double**, double**, double**, double*, int*, double*, double**, int**, double**, double**, double**, double**, double**, double**, int**, int*, int*, double**, int**, double**, double**, double**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, int**, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_updateRanEf_QR.cpp:73:20: warning: unused variable ‘j’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ GLMM_updateRanEf_QR.cpp:73:23: warning: unused variable ‘k’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ GLMM_updateRanEf_QR.cpp:73:26: warning: unused variable ‘l’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateVars_eps.cpp -o GLMM_updateVars_eps.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Bernoulli_Logit.cpp -o LogLik_Bernoulli_Logit.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Gauss_Identity.cpp -o LogLik_Gauss_Identity.o LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity1(double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:32:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 32 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity_sqrt_w_phi1(double*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:106:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 106 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity_sqrt_w_phi_stres1(double*, double*, double*, double*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:188:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 188 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity3(double*, double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:460:20: warning: unused variable ‘k’ [-Wunused-variable] 460 | static int i, j, k; | ^ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Poisson_Log.cpp -o LogLik_Poisson_Log.o LogLik_Poisson_Log.cpp: In function ‘void LogLik::Poisson_Log_sqrt_w_phi_stres2(double*, double*, double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*)’: LogLik_Poisson_Log.cpp:295:17: warning: unused variable ‘eta_now’ [-Wunused-variable] 295 | static double eta_now, ll_now; | ^~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_Moments_NormalApprox.cpp -o MCMC_Moments_NormalApprox.o MCMC_Moments_NormalApprox.cpp: In function ‘void MCMC::Moments_NormalApprox(double*, double*, const double*, const double*, const double*, const int*)’: MCMC_Moments_NormalApprox.cpp:96:27: warning: unused variable ‘QP’ [-Wunused-variable] 96 | static double *cmeanP, *QP; | ^~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_Moments_NormalApprox_QR.cpp -o MCMC_Moments_NormalApprox_QR.o MCMC_Moments_NormalApprox_QR.cpp: In function ‘void MCMC::Moments_NormalApprox_QR(double*, double*, int*, int*, double*, double*, int*, const double*, const double*, const int*, const int*, const char*)’: MCMC_Moments_NormalApprox_QR.cpp:180:14: warning: unused variable ‘one’ [-Wunused-variable] 180 | static int one = 1; | ^~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_loglik_Zwork1_stres.cpp -o MCMC_loglik_Zwork1_stres.o MCMC_loglik_Zwork1_stres.cpp: In function ‘void MCMC::loglik(double*, double*, int*, double**, double**, double**, int**, int**, double**, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: MCMC_loglik_Zwork1_stres.cpp:476:17: warning: unused variable ‘s2’ [-Wunused-variable] 476 | static int s, s2, l; | ^~ MCMC_loglik_Zwork1_stres.cpp: In function ‘void MCMC::loglik(double*, int*, double**, double**, double**, int**, int**, double**, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: MCMC_loglik_Zwork1_stres.cpp:577:17: warning: unused variable ‘s2’ [-Wunused-variable] 577 | static int s, s2, l; | ^~ MCMC_loglik_Zwork1_stres.cpp:577:21: warning: unused variable ‘l’ [-Wunused-variable] 577 | static int s, s2, l; | ^ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Misc_findIndexOfPermutation.cpp -o Misc_findIndexOfPermutation.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Misc_generatePermutations.cpp -o Misc_generatePermutations.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_ChainsDerived.cpp -o NMix_ChainsDerived.o NMix_ChainsDerived.cpp: In function ‘void NMix_ChainsDerived(double*, double*, int*, const int*, const double*, const int*, const double*, const double*, const double*, const int*, const int*)’: NMix_ChainsDerived.cpp:37:11: warning: unused variable ‘dP’ [-Wunused-variable] 37 | double *dP; | ^~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Deviance.cpp -o NMix_Deviance.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_MCMC.cpp -o NMix_MCMC.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_NMixRelabel.cpp -o NMix_NMixRelabel.o NMix_NMixRelabel.cpp: In function ‘void NMix_NMixRelabel(const int*, const int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, int*, int*, double*, int*, double*, double*, double*, double*, double*, int*, double*, double*, int*, int*, int*)’: NMix_NMixRelabel.cpp:212:11: warning: unused variable ‘hatPr_yP’ [-Wunused-variable] 212 | double *hatPr_yP = NULL; | ^~~~~~~~ NMix_NMixRelabel.cpp:329:5: warning: ‘simpleType’ may be used uninitialized [-Wmaybe-uninitialized] 329 | switch (simpleType){ | ^~~~~~ NMix_NMixRelabel.cpp:207:7: note: ‘simpleType’ was declared here 207 | int simpleType; | ^~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED.cpp -o NMix_PED.o NMix_PED.cpp: In function ‘void NMix_PED(double*, double*, double*, double*, int*, int*, int*, double*, int*, const double*, const double*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const int*, const double*, const double*, const double*, const int*, const int*, const int*, const double*, const double*)’: NMix_PED.cpp:56:15: warning: unused variable ‘fname’ [-Wunused-variable] 56 | const char *fname = "NMix_PED"; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED_coreMulti.cpp -o NMix_PED_coreMulti.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED_coreUni.cpp -o NMix_PED_coreUni.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PosterMeanMixParam.cpp -o NMix_PosterMeanMixParam.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Pr_y_and_cum_Pr_y.cpp -o NMix_Pr_y_and_cum_Pr_y.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCDFMarg.cpp -o NMix_PredCDFMarg.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCondDensCDFMarg.cpp -o NMix_PredCondDensCDFMarg.o NMix_PredCondDensCDFMarg.cpp: In function ‘void NMix_PredCondDensCDFMarg(double*, double*, int*, const int*, const int*, const double*, const int*, const double*, const int*, const int*, const int*, const double*, const double*, const double*, const int*)’: NMix_PredCondDensCDFMarg.cpp:70:17: warning: unused variable ‘wP’ [-Wunused-variable] 70 | const double *wP = NULL; | ^~ NMix_PredCondDensCDFMarg.cpp:71:17: warning: unused variable ‘muP’ [-Wunused-variable] 71 | const double *muP = NULL; | ^~~ NMix_PredCondDensCDFMarg.cpp:72:17: warning: unused variable ‘LiP’ [-Wunused-variable] 72 | const double *LiP = NULL; | ^~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCondDensJoint2.cpp -o NMix_PredCondDensJoint2.o NMix_PredCondDensJoint2.cpp: In function ‘void NMix_PredCondDensJoint2(double*, double*, int*, const int*, const double*, const int*, const int*, const int*, const double*, const double*, const double*, const int*)’: NMix_PredCondDensJoint2.cpp:56:17: warning: unused variable ‘wP’ [-Wunused-variable] 56 | const double *wP = NULL; | ^~ NMix_PredCondDensJoint2.cpp:57:17: warning: unused variable ‘muP’ [-Wunused-variable] 57 | const double *muP = NULL; | ^~~ NMix_PredCondDensJoint2.cpp:58:17: warning: unused variable ‘LiP’ [-Wunused-variable] 58 | const double *LiP = NULL; | ^~~ NMix_PredCondDensJoint2.cpp:96:27: warning: ‘lcgrid’ may be used uninitialized [-Wmaybe-uninitialized] 96 | int ldens = (lgrid + 1) * lcgrid; | ~~~~~~~~~~~~^~~~~~~~ NMix_PredCondDensJoint2.cpp:72:7: note: ‘lcgrid’ was declared here 72 | int lcgrid; | ^~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDA.cpp -o NMix_PredDA.o NMix_PredDA.cpp: In function ‘void NMix_PredDA(const double*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const int*, double*, int*, int*, double*, int*)’: NMix_PredDA.cpp:39:13: warning: unused variable ‘debug’ [-Wunused-variable] 39 | const int debug = 0; | ^~~~~ NMix_PredDA.cpp:40:15: warning: unused variable ‘fname’ [-Wunused-variable] 40 | const char *fname = "NMix_PredDA"; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDensJoint2.cpp -o NMix_PredDensJoint2.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDensMarg.cpp -o NMix_PredDensMarg.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_aux_vector_u.cpp -o NMix_RJMCMC_aux_vector_u.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_logJacLambdaVSigma.cpp -o NMix_RJMCMC_logJacLambdaVSigma.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_logJac_part3.cpp -o NMix_RJMCMC_logJac_part3.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCbirth.cpp -o NMix_RJMCMCbirth.o NMix_RJMCMCbirth.cpp: In function ‘void NMix::RJMCMCbirth(int*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, int*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*)’: NMix_RJMCMCbirth.cpp:54:39: warning: variable ‘dwork_orderComp’ set but not used [-Wunused-but-set-variable] 54 | static double *dwork_misc, *Li4mu, *dwork_orderComp; | ^~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCcombine.cpp -o NMix_RJMCMCcombine.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCdeath.cpp -o NMix_RJMCMCdeath.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCsplit.cpp -o NMix_RJMCMCsplit.o NMix_RJMCMCsplit.cpp: In function ‘void NMix::RJMCMCsplit(int*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int**, double*, double*, double*, double*, int*, int*, const double*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, void (*)(double*, double*, const double*, const int*))’: NMix_RJMCMCsplit.cpp:68:18: warning: variable ‘dlambdaV_dSigma’ set but not used [-Wunused-but-set-variable] 68 | static double *dlambdaV_dSigma; | ^~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_costMatrix.cpp -o NMix_Stephens_costMatrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step1.cpp -o NMix_Stephens_step1.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step2_search.cpp -o NMix_Stephens_step2_search.o NMix_Stephens_step2_search.cpp: In function ‘void NMix::Stephens_step2_search(int*, int*, int*, int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*)’: NMix_Stephens_step2_search.cpp:37:37: warning: unused variable ‘pij_q’ [-Wunused-variable] 37 | static double minLoss, Loss, pij, pij_q; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step2_transport.cpp -o NMix_Stephens_step2_transport.o NMix_Stephens_step2_transport.cpp: In function ‘void NMix::Stephens_step2_transport(int*, int*, int*, double*, double*, int*, double*, int*, double*, int*, const double*, const double*, const int*, const int*, const int*)’: NMix_Stephens_step2_transport.cpp:37:15: warning: variable ‘orderP’ set but not used [-Wunused-but-set-variable] 37 | static int *orderP, *rankP; | ^~~~~~ NMix_Stephens_step2_transport.cpp:37:24: warning: variable ‘rankP’ set but not used [-Wunused-but-set-variable] 37 | static int *orderP, *rankP; | ^~~~~ NMix_Stephens_step2_transport.cpp:39:17: warning: unused variable ‘minLoss’ [-Wunused-variable] 39 | static double minLoss[1]; | ^~~~~~~ NMix_Stephens_step2_transport.cpp:40:14: warning: unused variable ‘lp_status’ [-Wunused-variable] 40 | static int lp_status[1]; | ^~~~~~~~~ NMix_Stephens_step2_transport.cpp:42:17: warning: unused variable ‘IZERO’ [-Wunused-variable] 42 | static int IZERO[1] = {0}; | ^~~~~ NMix_Stephens_step2_transport.cpp:43:17: warning: unused variable ‘DZERO’ [-Wunused-variable] 43 | static double DZERO[1] = {0}; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Utils.cpp -o NMix_Utils.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_fullCondMean_WeightsMeansVars.cpp -o NMix_fullCondMean_WeightsMeansVars.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_orderComp.cpp -o NMix_orderComp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_reorder_Pr_y.cpp -o NMix_reorder_Pr_y.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_sum_Ir.cpp -o NMix_sum_Ir.o NMix_sum_Ir.cpp: In function ‘void NMix::sum_Ir(int*, const int*, const int*, const int*, const int*, const int*)’: NMix_sum_Ir.cpp:26:17: warning: unused variable ‘j’ [-Wunused-variable] 26 | static int l, j, m; | ^ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateAlloc.cpp -o NMix_updateAlloc.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateCensObs.cpp -o NMix_updateCensObs.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateHyperVars.cpp -o NMix_updateHyperVars.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateMeansVars.cpp -o NMix_updateMeansVars.o NMix_updateMeansVars.cpp: In function ‘void NMix::updateMeansVars_IC_homoscedastic(double*, double*, double*, double*, double*, int*, int*, double*, int*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*)’: NMix_updateMeansVars.cpp:477:38: warning: unused variable ‘log_detsP’ [-Wunused-variable] 477 | static double *QP, *SigmaP, *LiP, *log_detsP, *muP, *mixSSmP, *dP; | ^~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateWeights.cpp -o NMix_updateWeights.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_update_sum_Ir_and_sum_Pr_y.cpp -o NMix_update_sum_Ir_and_sum_Pr_y.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rand_RotationMatrix.cpp -o Rand_RotationMatrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rand_SamplePair.cpp -o Rand_SamplePair.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Stat_BLA.cpp -o Stat_BLA.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Stat_Quantile.cpp -o Stat_Quantile.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mixAK.so 00mixAK_init.o AK_BLAS.o AK_BSTAT.o AK_LAPACK.o AK_Utils.o Dist_Dirichlet.o Dist_Discrete.o Dist_MVN.o Dist_MVT.o Dist_TMVN.o Dist_TNorm.o Dist_TmixMVN.o Dist_TmixNorm.o Dist_Wishart.o Dist_mixMVN.o Dist_mixNorm.o GLMM_Deviance.o GLMM_Deviance2.o GLMM_Deviance2Pr_obs.o GLMM_MCMC.o GLMM_NMixRelabel.o GLMM_PED.o GLMM_copy_shift_eta_meanY_Zresp.o GLMM_create_SZitZiS.o GLMM_create_SZitZiS_4longitDA.o GLMM_create_XtX.o GLMM_create_ZS.o GLMM_create_ZiS.o GLMM_dY_meanY.o GLMM_eta_fixed_random2eta_meanY.o GLMM_fitted_Bernoulli_Logit.o GLMM_fitted_Poisson_Log.o GLMM_linear_predictors.o GLMM_longitDA.o GLMM_longitDA2.o GLMM_longitPred_nmix_gauss.o GLMM_newData.o GLMM_scale_ZitZi.o GLMM_updateFixEf.o GLMM_updateHyperVars_eps.o GLMM_updateRanEf.o GLMM_updateRanEf_QR.o GLMM_updateVars_eps.o LogLik_Bernoulli_Logit.o LogLik_Gauss_Identity.o LogLik_Poisson_Log.o MCMC_Moments_NormalApprox.o MCMC_Moments_NormalApprox_QR.o MCMC_loglik_Zwork1_stres.o Misc_findIndexOfPermutation.o Misc_generatePermutations.o NMix_ChainsDerived.o NMix_Deviance.o NMix_MCMC.o NMix_NMixRelabel.o NMix_PED.o NMix_PED_coreMulti.o NMix_PED_coreUni.o NMix_PosterMeanMixParam.o NMix_Pr_y_and_cum_Pr_y.o NMix_PredCDFMarg.o NMix_PredCondDensCDFMarg.o NMix_PredCondDensJoint2.o NMix_PredDA.o NMix_PredDensJoint2.o NMix_PredDensMarg.o NMix_RJMCMC_aux_vector_u.o NMix_RJMCMC_logJacLambdaVSigma.o NMix_RJMCMC_logJac_part3.o NMix_RJMCMCbirth.o NMix_RJMCMCcombine.o NMix_RJMCMCdeath.o NMix_RJMCMCsplit.o NMix_Stephens_costMatrix.o NMix_Stephens_step1.o NMix_Stephens_step2_search.o NMix_Stephens_step2_transport.o NMix_Utils.o NMix_fullCondMean_WeightsMeansVars.o NMix_orderComp.o NMix_reorder_Pr_y.o NMix_sum_Ir.o NMix_updateAlloc.o NMix_updateCensObs.o NMix_updateHyperVars.o NMix_updateMeansVars.o NMix_updateWeights.o NMix_update_sum_Ir_and_sum_Pr_y.o Rand_RotationMatrix.o Rand_SamplePair.o Stat_BLA.o Stat_Quantile.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpw0AIuI/R.INSTALLb5af52a02b079/mixAK/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mixAK/00new/mixAK/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixAK) * installing *source* package ‘lcmm’ ... ** this is package ‘lcmm’ version ‘2.2.2’ ** package ‘lcmm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpM8uyh7/R.INSTALLb5af93ef2fbbb/lcmm/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c runiran.c -o runiran.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c compute.f90 -o compute.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c hetmixOrd.f90 -o hetmixOrd.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c hetmixlin.f90 -o hetmixlin.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c hetmixCont.f90 -o hetmixCont.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c Jointhet.f90 -o Jointhet.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c calculusTransfo.f90 -o calculusTransfo.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictCont.f90 -o predictCont.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictMult.f90 -o predictMult.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c postprob2.f90 -o postprob2.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c cvpl.f90 -o cvpl.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictYcond.f90 -o predictYcond.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c mpjhet.f90 -o mpjhet.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c hetmixMult.f90 -o hetmixMult.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c iteminfo.f90 -o iteminfo.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c Integ.f90 -o Integ.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o lcmm.so init.o runiran.o compute.o hetmixOrd.o hetmixlin.o hetmixCont.o Jointhet.o calculusTransfo.o predictCont.o predictMult.o postprob2.o cvpl.o predictYcond.o mpjhet.o hetmixMult.o iteminfo.o Integ.o -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpM8uyh7/R.INSTALLb5af93ef2fbbb/lcmm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lcmm/00new/lcmm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lcmm) * installing *source* package ‘otelsdk’ ... ** this is package ‘otelsdk’ version ‘0.2.3’ ** package ‘otelsdk’ successfully unpacked and MD5 sums checked ** using staged installation ** Detected PROTOBUF_INCLUDE="" ** Detected PROTOBUF_LIBS="-lprotobuf" ** Detected LIBCURL_LIBS="-lcurl" ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src' rm -f otelcpplib tar xzf vendor/opentelemetry-cpp.tgz --no-same-owner || \ tar xzf vendor/opentelemetry-cpp.tgz mkdir -p cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1 cp status.proto \ cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/ patch -p0 < vendor/opentelemetry-cpp.patch patching file cpp/exporters/otlp/src/otlp_file_client.cc Hunk #1 succeeded at 1256 (offset 3 lines). patching file cpp/third_party/opentelemetry-proto/Makefile patching file cpp/cmake/opentelemetry-proto.cmake Hunk #1 succeeded at 67 (offset -23 lines). Hunk #2 succeeded at 107 (offset -23 lines). Hunk #3 succeeded at 131 (offset -23 lines). Hunk #4 succeeded at 252 (offset -4 lines). Hunk #5 succeeded at 288 (offset -4 lines). Hunk #6 succeeded at 301 (offset -4 lines). Hunk #7 succeeded at 326 (offset -3 lines). patching file cpp/sdk/src/metrics/meter_context.cc Hunk #1 succeeded at 157 (offset 3 lines). Hunk #2 succeeded at 173 (offset 3 lines). patching file cpp/sdk/include/opentelemetry/sdk/metrics/meter_context.h patching file cpp/sdk/src/metrics/meter_provider.cc Hunk #1 succeeded at 163 (offset 4 lines). patching file cpp/exporters/otlp/src/otlp_file_client.cc patching file cpp/api/include/opentelemetry/trace/span.h patching file cpp/sdk/include/opentelemetry/sdk/trace/multi_recordable.h patching file cpp/sdk/include/opentelemetry/sdk/trace/recordable.h patching file cpp/sdk/src/trace/span.cc patching file cpp/api/include/opentelemetry/trace/default_span.h patching file cpp/api/include/opentelemetry/trace/noop.h patching file cpp/sdk/src/trace/span.h patching file cpp/sdk/include/opentelemetry/sdk/trace/span_data.h patching file cpp/exporters/otlp/include/opentelemetry/exporters/otlp/otlp_recordable.h patching file cpp/exporters/otlp/src/otlp_recordable.cc patching file cpp/api/include/opentelemetry/context/runtime_context.h patching file cpp/sdk/include/opentelemetry/sdk/common/circular_buffer.h patching file cpp/cmake/opentelemetry-proto.cmake Hunk #1 succeeded at 207 (offset 15 lines). patching file cpp/third_party/opentelemetry-proto/opentelemetry/proto/metrics/v1/metrics.proto patching file cpp/third_party/opentelemetry-proto/opentelemetry/proto/profiles/v1development/profiles.proto (cd cpp; MAKEFLAGS= CC="gcc-15" CXX="g++-15 -std=gnu++20" AR="ar" \ RANLIB="ranlib" CPPFLAGS="-I/usr/local/include" \ CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native -fpic -DNDEBUG " \ CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNDEBUG " \ ""/usr/bin/cmake"" -S . -B build \ -DWITH_ABI_VERSION_1=OFF -DWITH_ABI_VERSION_2=ON \ -DCMAKE_INSTALL_PREFIX=../install -DCMAKE_INSTALL_LIBDIR=lib \ -DCMAKE_PREFIX_PATH="" \ -DCMAKE_POSITION_INDEPENDENT_CODE=ON \ -DBUILD_SHARED_LIBS=OFF -DCMAKE_CXX_STANDARD=14 \ -DWITH_ELASTICSEARCH=OFF -DWITH_EXAMPLES=OFF \ -DWITH_OTLP_GRPC=OFF -DWITH_OTLP_HTTP=ON -DWITH_OTLP_FILE=ON \ -DWITH_ABSEIL=OFF -DWITH_PROMETHEUS=OFF -DBUILD_TESTING=OFF \ -DWITH_BENCHMARK=OFF -DWITH_FUNC_TESTS=OFF -DWITH_ETW=OFF) CMake Deprecation Warning at CMakeLists.txt:25 (cmake_policy): The OLD behavior for policy CMP0092 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-15 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-15 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- OPENTELEMETRY_ABI_VERSION_NO=2 -- OPENTELEMETRY_VERSION=1.22.0 -- Performing Test check_cxx_compiler_flag_-Wno-type-limits -- Performing Test check_cxx_compiler_flag_-Wno-type-limits - Success -- Performing Test check_cxx_compiler_flag_-Wno-deprecated-declarations -- Performing Test check_cxx_compiler_flag_-Wno-deprecated-declarations - Success -- Performing Test check_cxx_compiler_flag_-Wno-unused-parameter -- Performing Test check_cxx_compiler_flag_-Wno-unused-parameter - Success -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Could NOT find Protobuf (missing: Protobuf_DIR) -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so (found version "3.21.12") -- PROTOBUF_PROTOC_EXECUTABLE=/usr/bin/protoc -- fetching opentelemetry-proto from git submodule -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.19.0") -- Using the single-header code from /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/nlohmann-json/single_include/ -- --------------------------------------------- -- build settings -- --------------------------------------------- -- OpenTelemetry: 1.22.0 -- OpenTelemetry ABI: 2 -- CMAKE_SYSTEM_PROCESSOR: x86_64 -- CXX: GNU 15.2.0 -- CMAKE_BUILD_TYPE: -- CXXFLAGS: -g -O2 -Wall -pedantic -mtune=native -fpic -DNDEBUG -- CMAKE_CXX_STANDARD: 14 -- CMAKE_TOOLCHAIN_FILE: -- BUILD_SHARED_LIBS: OFF -- --------------------------------------------- -- opentelemetry-cpp build options -- --------------------------------------------- -- WITH_API_ONLY: OFF -- WITH_NO_DEPRECATED_CODE: OFF -- WITH_ABI_VERSION_1: OFF -- WITH_ABI_VERSION_2: ON -- OTELCPP_VERSIONED_LIBS: OFF -- OTELCPP_MAINTAINER_MODE: OFF -- WITH_STL: OFF -- WITH_GSL: OFF -- WITH_NO_GETENV: OFF -- --------------------------------------------- -- opentelemetry-cpp cmake component options -- --------------------------------------------- -- WITH_OTLP_GRPC: OFF -- WITH_OTLP_HTTP: ON -- WITH_OTLP_FILE: ON -- WITH_HTTP_CLIENT_CURL: ON -- WITH_ZIPKIN: OFF -- WITH_PROMETHEUS: OFF -- WITH_ELASTICSEARCH: OFF -- WITH_OPENTRACING: OFF -- WITH_ETW: OFF -- OPENTELEMETRY_BUILD_DLL: -- --------------------------------------------- -- feature preview options -- --------------------------------------------- -- WITH_ASYNC_EXPORT_PREVIEW: OFF -- WITH_THREAD_INSTRUMENTATION_PREVIEW: OFF -- WITH_METRICS_EXEMPLAR_PREVIEW: OFF -- WITH_OTLP_GRPC_SSL_MTLS_PREVIEW: OFF -- WITH_OTLP_GRPC_CREDENTIAL_PREVIEW: OFF -- WITH_OTLP_RETRY_PREVIEW: OFF -- --------------------------------------------- -- third-party options -- --------------------------------------------- -- WITH_NLOHMANN_JSON: ON -- WITH_CURL_LOGGING: OFF -- WITH_OTLP_HTTP_COMPRESSION: OFF -- --------------------------------------------- -- examples and test options -- --------------------------------------------- -- WITH_BENCHMARK: OFF -- WITH_EXAMPLES: OFF -- WITH_EXAMPLES_HTTP: OFF -- WITH_FUNC_TESTS: OFF -- BUILD_W3CTRACECONTEXT_TEST: OFF -- BUILD_TESTING: OFF -- --------------------------------------------- -- versions -- --------------------------------------------- -- CMake: 4.2.3 -- GTest: () -- benchmark: () -- Protobuf: 3.21.12 -- CURL: 8.19.0 -- nlohmann-json: (fetch_source) -- --------------------------------------------- -- Building WITH_STL=OFF -- Installing components: -- Install COMPONENT api -- TARGETS: opentelemetry_api -- TARGETS_ALIAS: opentelemetry-cpp::api -- COMPONENT_DEPENDS: -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/api/include/opentelemetry -- FILES_DESTINATION: include -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT sdk -- TARGETS: opentelemetry_sdk;opentelemetry_common;opentelemetry_resources;opentelemetry_version;opentelemetry_logs;opentelemetry_trace;opentelemetry_metrics -- TARGETS_ALIAS: opentelemetry-cpp::sdk;opentelemetry-cpp::common;opentelemetry-cpp::resources;opentelemetry-cpp::version;opentelemetry-cpp::logs;opentelemetry-cpp::trace;opentelemetry-cpp::metrics -- COMPONENT_DEPENDS: api -- THIRDPARTY_DEPENDS: Threads -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/sdk/include/opentelemetry/ -- FILES_DESTINATION: include/opentelemetry -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT ext_common -- TARGETS: opentelemetry_ext -- TARGETS_ALIAS: opentelemetry-cpp::ext -- COMPONENT_DEPENDS: api -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/ext/include/opentelemetry/ext -- FILES_DESTINATION: include/opentelemetry/ -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT ext_http_curl -- TARGETS: opentelemetry_http_client_curl -- TARGETS_ALIAS: opentelemetry-cpp::http_client_curl -- COMPONENT_DEPENDS: api;sdk;ext_common -- THIRDPARTY_DEPENDS: CURL -- FILES_DIRECTORY: -- FILES_DESTINATION: -- FILES_MATCHING: -- Install COMPONENT exporters_otlp_common -- TARGETS: opentelemetry_otlp_recordable;opentelemetry_proto -- TARGETS_ALIAS: opentelemetry-cpp::otlp_recordable;opentelemetry-cpp::proto -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: Protobuf -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h;PATTERN;otlp_http*.h;EXCLUDE;PATTERN;otlp_grpc*.h;EXCLUDE;PATTERN;otlp_file*.h;EXCLUDE -- Install COMPONENT exporters_otlp_http -- TARGETS: opentelemetry_exporter_otlp_http_client;opentelemetry_exporter_otlp_http;opentelemetry_exporter_otlp_http_log;opentelemetry_exporter_otlp_http_metric -- TARGETS_ALIAS: opentelemetry-cpp::otlp_http_client;opentelemetry-cpp::otlp_http_exporter;opentelemetry-cpp::otlp_http_log_record_exporter;opentelemetry-cpp::otlp_http_metric_exporter -- COMPONENT_DEPENDS: api;sdk;ext_common;exporters_otlp_common;ext_http_curl -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;otlp_http*.h -- Install COMPONENT exporters_otlp_file -- TARGETS: opentelemetry_exporter_otlp_file_client;opentelemetry_exporter_otlp_file;opentelemetry_exporter_otlp_file_log;opentelemetry_exporter_otlp_file_metric -- TARGETS_ALIAS: opentelemetry-cpp::otlp_file_client;opentelemetry-cpp::otlp_file_exporter;opentelemetry-cpp::otlp_file_log_record_exporter;opentelemetry-cpp::otlp_file_metric_exporter -- COMPONENT_DEPENDS: api;sdk;exporters_otlp_common -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;otlp_file*.h -- Install COMPONENT exporters_ostream -- TARGETS: opentelemetry_exporter_ostream_span;opentelemetry_exporter_ostream_metrics;opentelemetry_exporter_ostream_logs -- TARGETS_ALIAS: opentelemetry-cpp::ostream_span_exporter;opentelemetry-cpp::ostream_metrics_exporter;opentelemetry-cpp::ostream_log_record_exporter -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/exporters/ostream/include/opentelemetry/exporters/ostream -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT exporters_in_memory -- TARGETS: opentelemetry_exporter_in_memory;opentelemetry_exporter_in_memory_metric -- TARGETS_ALIAS: opentelemetry-cpp::in_memory_span_exporter;opentelemetry-cpp::in_memory_metric_exporter -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/exporters/memory/include/opentelemetry/exporters/memory -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h -- Configuring done (2.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: WITH_ABSEIL -- Build files have been written to: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/build (cd cpp; ""/usr/bin/cmake"" --build build 2>&1) | cat gmake[2]: Entering directory '/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/build' [ 0%] [Run]: "/usr/bin/protoc" "--proto_path=/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto" "--cpp_out=/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/build/generated/third_party/opentelemetry-proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/common/v1/common.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/resource/v1/resource.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/trace/v1/trace.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/logs/v1/logs.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/metrics/v1/metrics.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/profiles/v1development/profiles.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/trace/v1/trace_service.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/logs/v1/logs_service.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/metrics/v1/metrics_service.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/profiles/v1development/profiles_service.proto" "/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/status.proto" [ 1%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/common/v1/common.pb.cc.o [ 2%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/resource/v1/resource.pb.cc.o [ 2%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/trace/v1/trace.pb.cc.o [ 3%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/logs/v1/logs.pb.cc.o [ 4%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/metrics/v1/metrics.pb.cc.o [ 4%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/trace/v1/trace_service.pb.cc.o [ 5%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/logs/v1/logs_service.pb.cc.o [ 6%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/metrics/v1/metrics_service.pb.cc.o [ 6%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/status.pb.cc.o [ 7%] Linking CXX static library libopentelemetry_proto.a [ 7%] Built target opentelemetry_proto [ 7%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/random.cc.o [ 8%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/global_log_handler.cc.o [ 9%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/env_variables.cc.o [ 9%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/base64.cc.o [ 10%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/disabled.cc.o [ 11%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/platform/fork_unix.cc.o [ 11%] Linking CXX static library libopentelemetry_common.a [ 11%] Built target opentelemetry_common [ 12%] Building CXX object sdk/src/resource/CMakeFiles/opentelemetry_resources.dir/resource.cc.o [ 12%] Building CXX object sdk/src/resource/CMakeFiles/opentelemetry_resources.dir/resource_detector.cc.o [ 13%] Linking CXX static library libopentelemetry_resources.a [ 13%] Built target opentelemetry_resources [ 14%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_context.cc.o [ 14%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_context_factory.cc.o [ 15%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_provider.cc.o [ 16%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_provider_factory.cc.o [ 16%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer.cc.o [ 17%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/span.cc.o [ 18%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/exporter.cc.o [ 18%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/provider.cc.o [ 19%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/batch_span_processor.cc.o [ 20%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/batch_span_processor_factory.cc.o [ 20%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/simple_processor_factory.cc.o [ 21%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/always_on_factory.cc.o [ 22%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/always_off_factory.cc.o [ 22%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/parent.cc.o [ 23%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/parent_factory.cc.o [ 24%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/trace_id_ratio.cc.o [ 24%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/trace_id_ratio_factory.cc.o [ 25%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/random_id_generator.cc.o [ 26%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/random_id_generator_factory.cc.o [ 26%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_config.cc.o [ 27%] Linking CXX static library libopentelemetry_trace.a [ 27%] Built target opentelemetry_trace [ 28%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/async_instruments.cc.o [ 28%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/provider.cc.o [ 29%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_provider.cc.o [ 30%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_provider_factory.cc.o [ 30%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter.cc.o [ 31%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_config.cc.o [ 32%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_context.cc.o [ 32%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_context_factory.cc.o [ 33%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/metric_reader.cc.o [ 34%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/instrument_metadata_validator.cc.o [ 34%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/export/periodic_exporting_metric_reader.cc.o [ 35%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/export/periodic_exporting_metric_reader_factory.cc.o [ 36%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/filtered_ordered_attribute_map.cc.o [ 36%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/metric_collector.cc.o [ 37%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/observable_registry.cc.o [ 38%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/sync_metric_storage.cc.o [ 38%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/temporal_metric_storage.cc.o [ 39%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/base2_exponential_histogram_aggregation.cc.o [ 40%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/base2_exponential_histogram_indexer.cc.o [ 40%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/histogram_aggregation.cc.o [ 41%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/lastvalue_aggregation.cc.o [ 42%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/sum_aggregation.cc.o [ 42%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/data/circular_buffer.cc.o [ 43%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/exemplar/reservoir.cc.o [ 44%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/instrument_selector_factory.cc.o [ 44%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/meter_selector_factory.cc.o [ 45%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/view_factory.cc.o [ 46%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/view_registry_factory.cc.o [ 46%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/sync_instruments.cc.o [ 47%] Linking CXX static library libopentelemetry_metrics.a [ 47%] Built target opentelemetry_metrics [ 47%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/provider.cc.o [ 48%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_provider.cc.o [ 49%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_provider_factory.cc.o [ 49%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger.cc.o [ 50%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/exporter.cc.o [ 51%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/event_logger_provider.cc.o [ 51%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/event_logger_provider_factory.cc.o [ 52%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/event_logger.cc.o [ 53%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/simple_log_record_processor.cc.o [ 53%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/simple_log_record_processor_factory.cc.o [ 54%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/batch_log_record_processor.cc.o [ 55%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/batch_log_record_processor_factory.cc.o [ 55%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_config.cc.o [ 56%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_context.cc.o [ 57%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_context_factory.cc.o [ 57%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_log_record_processor.cc.o [ 58%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_log_record_processor_factory.cc.o [ 59%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_recordable.cc.o [ 59%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/read_write_log_record.cc.o [ 60%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/readable_log_record.cc.o [ 61%] Linking CXX static library libopentelemetry_logs.a [ 61%] Built target opentelemetry_logs [ 62%] Building CXX object sdk/src/version/CMakeFiles/opentelemetry_version.dir/version.cc.o [ 63%] Linking CXX static library libopentelemetry_version.a [ 63%] Built target opentelemetry_version [ 64%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_client_factory_curl.cc.o [ 64%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_client_curl.cc.o [ 65%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_operation_curl.cc.o [ 66%] Linking CXX static library libopentelemetry_http_client_curl.a [ 66%] Built target opentelemetry_http_client_curl [ 67%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_environment.cc.o [ 67%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_log_recordable.cc.o [ 68%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_recordable.cc.o [ 69%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_populate_attribute_utils.cc.o [ 69%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_recordable_utils.cc.o [ 70%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_metric_utils.cc.o [ 71%] Linking CXX static library libopentelemetry_otlp_recordable.a [ 71%] Built target opentelemetry_otlp_recordable [ 71%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_client.dir/src/otlp_http.cc.o [ 72%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_client.dir/src/otlp_http_client.cc.o [ 73%] Linking CXX static library libopentelemetry_exporter_otlp_http_client.a [ 73%] Built target opentelemetry_exporter_otlp_http_client [ 74%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter.cc.o [ 74%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter_factory.cc.o [ 75%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter_options.cc.o [ 76%] Linking CXX static library libopentelemetry_exporter_otlp_http.a [ 76%] Built target opentelemetry_exporter_otlp_http [ 76%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter.cc.o [ 77%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter_factory.cc.o [ 78%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter_options.cc.o [ 78%] Linking CXX static library libopentelemetry_exporter_otlp_http_log.a [ 78%] Built target opentelemetry_exporter_otlp_http_log [ 79%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter.cc.o [ 80%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter_factory.cc.o [ 80%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter_options.cc.o [ 81%] Linking CXX static library libopentelemetry_exporter_otlp_http_metric.a [ 81%] Built target opentelemetry_exporter_otlp_http_metric [ 82%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_client.dir/src/otlp_file_client.cc.o [ 83%] Linking CXX static library libopentelemetry_exporter_otlp_file_client.a [ 83%] Built target opentelemetry_exporter_otlp_file_client [ 83%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter.cc.o [ 84%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter_factory.cc.o [ 85%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter_options.cc.o [ 85%] Linking CXX static library libopentelemetry_exporter_otlp_file.a [ 85%] Built target opentelemetry_exporter_otlp_file [ 85%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter.cc.o [ 86%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter_factory.cc.o [ 87%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter_options.cc.o [ 87%] Linking CXX static library libopentelemetry_exporter_otlp_file_log.a [ 87%] Built target opentelemetry_exporter_otlp_file_log [ 88%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter.cc.o [ 89%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter_factory.cc.o [ 89%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter_options.cc.o [ 90%] Linking CXX static library libopentelemetry_exporter_otlp_file_metric.a [ 90%] Built target opentelemetry_exporter_otlp_file_metric [ 90%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_span.dir/src/span_exporter.cc.o [ 91%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_span.dir/src/span_exporter_factory.cc.o [ 92%] Linking CXX static library libopentelemetry_exporter_ostream_span.a [ 92%] Built target opentelemetry_exporter_ostream_span [ 92%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_metrics.dir/src/metric_exporter.cc.o [ 93%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_metrics.dir/src/metric_exporter_factory.cc.o [ 94%] Linking CXX static library libopentelemetry_exporter_ostream_metrics.a [ 94%] Built target opentelemetry_exporter_ostream_metrics [ 94%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_logs.dir/src/log_record_exporter.cc.o [ 95%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_logs.dir/src/log_record_exporter_factory.cc.o [ 96%] Linking CXX static library libopentelemetry_exporter_ostream_logs.a [ 96%] Built target opentelemetry_exporter_ostream_logs [ 97%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory.dir/src/in_memory_span_exporter_factory.cc.o [ 98%] Linking CXX static library libopentelemetry_exporter_in_memory.a [ 98%] Built target opentelemetry_exporter_in_memory [ 98%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory_metric.dir/src/in_memory_metric_exporter_factory.cc.o [ 99%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory_metric.dir/src/in_memory_metric_data.cc.o [100%] Linking CXX static library libopentelemetry_exporter_in_memory_metric.a [100%] Built target opentelemetry_exporter_in_memory_metric gmake[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/cpp/build' (cd cpp; ""/usr/bin/cmake"" --install build) -- Install configuration: "" -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto/common -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto/common/v1 -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto/common/v1/common.pb.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto/profiles -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto/profiles/v1development -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto/profiles/v1development/profiles.pb.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto/trace -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/proto/trace/v1 -- Installing: 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/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/otlp/protobuf_include_prefix.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/otlp/._otlp_http_client.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/otlp/._otlp_file_log_record_exporter_runtime_options.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/otlp/._otlp_grpc_log_record_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_preferred_temporality.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/lib/libopentelemetry_exporter_otlp_http_client.a -- Installing: 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/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_span_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_data.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_span_data.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_data.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_metric_data.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_metric_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_span_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_metric_data.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_data.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_metric_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/lib/cmake/opentelemetry-cpp/component-definitions.cmake -- Installing: /home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src/install/lib/cmake/opentelemetry-cpp/thirdparty-dependency-definitions.cmake touch otelcpplib gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrap-r.c -o wrap-r.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrap-c.cc -o wrap-c.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glue.c -o glue.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c span.c -o span.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c context.c -o context.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tracer.c -o tracer.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tracer-sdk.cc -o tracer-sdk.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tracer-api.cc -o tracer-api.o tracer-api.cc: In function ‘void otel_span_set_status_(void*, int, char*)’: tracer-api.cc:300:19: warning: ‘status_code’ may be used uninitialized [-Wmaybe-uninitialized] 300 | span.SetStatus(status_code); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ tracer-api.cc:289:21: note: ‘status_code’ was declared here 289 | trace::StatusCode status_code; | ^~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c meter.c -o meter.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c meter-sdk.cc -o meter-sdk.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logger.c -o logger.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logger-sdk.cc -o logger-sdk.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-collector.c -o r-collector.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c collector.cc -o collector.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stdstream.cc -o stdstream.o ar rs libstdstream-exporter.a stdstream.o ar: creating libstdstream-exporter.a g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o otelsdk.so init.o cleancall.o wrap-r.o wrap-c.o glue.o utils.o errors.o span.o context.o tracer.o tracer-sdk.o tracer-api.o meter.o meter-sdk.o logger.o logger-sdk.o r-collector.o collector.o -Linstall/lib libstdstream-exporter.a -lopentelemetry_exporter_ostream_span -lopentelemetry_exporter_otlp_http -lopentelemetry_exporter_otlp_http_client -lopentelemetry_exporter_ostream_logs -lopentelemetry_exporter_otlp_http_log -lopentelemetry_exporter_otlp_http_metric -lopentelemetry_exporter_ostream_metrics -lopentelemetry_exporter_otlp_file -lopentelemetry_exporter_otlp_file_log -lopentelemetry_exporter_otlp_file_metric -lopentelemetry_exporter_in_memory -lopentelemetry_exporter_in_memory_metric -lopentelemetry_exporter_otlp_file_client -lopentelemetry_http_client_curl -lopentelemetry_otlp_recordable -lopentelemetry_trace -lopentelemetry_logs -lopentelemetry_metrics -lopentelemetry_resources -lopentelemetry_common -lopentelemetry_proto -lprotobuf -lcurl libstdstream-exporter.a -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRMFuWj/R.INSTALLb47223cd6a81/otelsdk/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-otelsdk/00new/otelsdk/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (otelsdk) checking tinytex_0.59.tar.gz ... checking bookdown_0.46.tar.gz ... checking DQAstats_0.3.9.tar.gz ... checking exams.forge_1.0.13.tar.gz ... checking genetic.algo.optimizeR_0.3.3.tar.gz ... checking ggdiagram_0.1.1.tar.gz ... checking glioblastomaEHRsData_1.1.0.tar.gz ... checking oldr_0.2.4.tar.gz ... checking R3port_0.3.1.tar.gz ... checking rjtools_1.0.18.1.tar.gz ... checking rmarkdown_2.31.tar.gz ... checking texor_1.6.0.tar.gz ... checking rticles_0.27.tar.gz ... checking texPreview_2.1.0.tar.gz ... checking worcs_0.1.20.tar.gz ... checking xdvir_0.2-0.tar.gz ... checking activAnalyzer_2.1.2.tar.gz ... checking agrobox_0.2.1.tar.gz ... checking aldvmm_0.9.0.tar.gz ... checking biodosetools_3.7.2.tar.gz ... checking caracas_2.1.1.tar.gz ... checking chipPCR_1.0-2.tar.gz ... checking collatz_1.0.0.tar.gz ... checking ctsem_3.10.6.tar.gz ... checking dimRed_0.2.7.tar.gz ... checking emburden_0.6.1.tar.gz ... checking exams_2.4-3.tar.gz ... checking fcaR_1.5.0.tar.gz ... checking fixest_0.14.0.tar.gz ... checking modelsummary_2.6.0.tar.gz ... checking tablet_0.7.1.tar.gz ... checking latexdiffr_0.2.0.tar.gz ... checking QurvE_1.1.2.tar.gz ... checking latrend_1.6.3.tar.gz ... checking ggtikz_0.1.5.tar.gz ... checking SoilR_1.2.107.tar.gz ... checking teal.reporter_0.6.1.tar.gz ... checking litedown_0.9.tar.gz ... checking repoRter.nih_0.1.4.tar.gz ... checking journalabbr_0.4.3.tar.gz ... checking inlcolor_1.0.6.tar.gz ... checking spectrolab_0.0.19.tar.gz ... checking huxtable_5.8.0.tar.gz ... checking kableExtra_1.4.0.tar.gz ... checking sumvar_0.2.0.tar.gz ... checking xfun_0.57.tar.gz ... checking knitr_1.51.tar.gz ... checking scbursts_1.6.tar.gz ... checking summata_0.11.4.tar.gz ... checking xtable_1.8-8.tar.gz ... checking TDCM_0.1.0.tar.gz ... checking TeXCheckR_0.8.1.tar.gz ... checking rUM_2.3.0.tar.gz ... checking ssdtools_2.6.0.tar.gz ... checking VsusP_1.0.0.tar.gz ... checking jubilee_0.3.3.tar.gz ... checking WebAnalytics_0.9.14.tar.gz ... checking shinyInvoice_0.0.5.tar.gz ... checking tinytable_0.16.0.tar.gz ... checking VedicDateTime_0.1.9.tar.gz ... checking TAD_1.0.1.tar.gz ... Depends: Package: tinytex Imports: xfun (>= 0.48) Timings: user system elapsed tinytex 30.234 3.865 36.161 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 6 54 Check results summary: tinytex ... OK rdepends_activAnalyzer ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_agrobox ... OK rdepends_aldvmm ... OK rdepends_biodosetools ... OK rdepends_bookdown ... OK rdepends_caracas ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_chipPCR ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_collatz ... OK rdepends_ctsem ... OK rdepends_dimRed ... OK rdepends_DQAstats ... OK rdepends_emburden ... OK rdepends_exams.forge ... OK rdepends_exams ... OK rdepends_fcaR ... OK rdepends_fixest ... OK rdepends_genetic.algo.optimizeR ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_ggdiagram ... OK rdepends_ggtikz ... OK rdepends_glioblastomaEHRsData ... OK rdepends_huxtable ... OK rdepends_inlcolor ... OK rdepends_journalabbr ... OK rdepends_jubilee ... OK rdepends_kableExtra ... OK rdepends_knitr ... OK rdepends_latexdiffr ... OK rdepends_latrend ... OK rdepends_litedown ... OK rdepends_modelsummary ... OK rdepends_oldr ... OK rdepends_QurvE ... OK rdepends_R3port ... OK rdepends_repoRter.nih ... OK rdepends_rjtools ... OK rdepends_rmarkdown ... OK rdepends_rticles ... OK rdepends_rUM ... OK rdepends_scbursts ... OK rdepends_shinyInvoice ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_SoilR ... OK rdepends_spectrolab ... OK rdepends_ssdtools ... OK rdepends_summata ... OK rdepends_sumvar ... OK rdepends_tablet ... OK rdepends_TAD ... OK rdepends_TDCM ... OK rdepends_teal.reporter ... OK rdepends_TeXCheckR ... OK rdepends_texor ... OK rdepends_texPreview ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_tinytable ... OK rdepends_VedicDateTime ... OK rdepends_VsusP ... OK rdepends_WebAnalytics ... OK rdepends_worcs ... OK rdepends_xdvir ... OK rdepends_xfun ... OK rdepends_xtable ... OK Check results changes: Package: chipPCR Check: CRAN incoming feasibility Old result: NOTE Package: collatz Check: CRAN incoming feasibility Old result: NOTE Package: jubilee Check: CRAN incoming feasibility Old result: NOTE Package: rticles Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: scbursts Check: CRAN incoming feasibility Old result: NOTE Package: SoilR Check: CRAN incoming feasibility Old result: NOTE