R Under development (unstable) (2026-03-22 r89674 ucrt) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > > library(testthat) > library(tinyVAST) > > # Run tests > testthat::test_check("tinyVAST") Starting 2 test processes. > test-SAR.R: > test-SAR.R: Attaching package: 'igraph' > test-SAR.R: > test-SAR.R: The following objects are masked from 'package:stats': > test-SAR.R: > test-SAR.R: decompose, spectrum > test-SAR.R: > test-SAR.R: The following object is masked from 'package:testthat': > test-SAR.R: > test-SAR.R: compare > test-SAR.R: > test-SAR.R: The following object is masked from 'package:base': > test-SAR.R: > test-SAR.R: union > test-SAR.R: > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running nlminb_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 464.8731 mgc: 189.7898 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.689582e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.689582e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 139.7703 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 841.4727 mgc: 21.43129 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.067839e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 495.9944 mgc: 8.655677 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.778143e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.778143e-13 > test-basic-fits.R: outer mgc: 50.0049 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 414.7839 mgc: 6.203625 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.985133e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.985133e-13 > test-basic-fits.R: outer mgc: 10.49524 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 278.5407 mgc: 8.694147 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.390995e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.390995e-13 > test-basic-fits.R: outer mgc: 42.56898 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 383.0102 mgc: 10.88808 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.85542e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.85542e-13 > test-basic-fits.R: outer mgc: 33.02677 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 206.1071 mgc: 9.949935 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.704089e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.704089e-13 > test-basic-fits.R: outer mgc: 66.67452 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 295.4025 mgc: 7.507776 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.043332e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 190.072 mgc: 5.290869 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.464352e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 187.7975 mgc: 1.45856 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.671848e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.671848e-13 > test-basic-fits.R: outer mgc: 14.43981 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 247.135 mgc: 0.5582287 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.852862e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.852862e-13 > test-basic-fits.R: outer mgc: 16.22027 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 253.5569 mgc: 1.406947 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.249704e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.249704e-13 > test-basic-fits.R: outer mgc: 6.067037 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 246.2088 mgc: 1.068634 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.086404e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 219.3874 mgc: 1.32038 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.487925e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.487925e-13 > test-basic-fits.R: outer mgc: 10.2619 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 89.61339 mgc: 4.94305 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.390683e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 202.5896 mgc: 0.8332328 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.707603e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.707603e-13 > test-basic-fits.R: outer mgc: 6.263402 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 228.787 mgc: 0.3767094 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.086791e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.086791e-13 > test-basic-fits.R: outer mgc: 2.999899 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 217.2246 mgc: 0.729245 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.347554e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.347554e-14 > test-basic-fits.R: outer mgc: 8.677365 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 227.8854 mgc: 0.3342099 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.051357e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.051357e-13 > test-basic-fits.R: outer mgc: 2.357661 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.161 mgc: 0.4507325 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.135563e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 8.135563e-14 > test-basic-fits.R: outer mgc: 0.1356342 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.8819 mgc: 0.02097006 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.11337e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.11337e-13 > test-basic-fits.R: outer mgc: 0.03511879 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.3697 mgc: 0.008020651 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.31161e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.31161e-13 > test-basic-fits.R: outer mgc: 0.01736614 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2073 mgc: 0.002393546 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.473833e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 8.473833e-14 > test-basic-fits.R: outer mgc: 0.0009654507 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2082 mgc: 0.000159373 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.701209e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.701209e-14 > test-basic-fits.R: outer mgc: 8.114833e-05 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.701209e-14 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.701209e-14 > test-basic-fits.R: outer mgc: 8.114833e-05 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2082 mgc: 0.002658517 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.44706e-13 > test-basic-fits.R: outer mgc: 0.0358767 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2082 mgc: 0.002658517 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.049335e-13 > test-basic-fits.R: outer mgc: 0.03591924 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.9303 mgc: 0.0166114 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.872822e-13 > test-basic-fits.R: outer mgc: 0.2250638 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.4852 mgc: 0.01666319 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.028459e-13 > test-basic-fits.R: outer mgc: 0.2253101 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.206 mgc: 0.00338877 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.093061e-14 > test-basic-fits.R: outer mgc: 0.001985216 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2103 mgc: 0.003385383 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.189437e-13 > test-basic-fits.R: outer mgc: 0.001994549 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.4147 mgc: 0.0160169 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.229699e-13 > test-basic-fits.R: outer mgc: 0.6193572 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.002 mgc: 0.01604897 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.119372e-13 > test-basic-fits.R: outer mgc: 0.6193144 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.8352 mgc: 0.008045515 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.295296e-13 > test-basic-fits.R: outer mgc: 0.1342154 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.5808 mgc: 0.008019371 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.471403e-14 > test-basic-fits.R: outer mgc: 0.1341932 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2083 mgc: 9.358682e-06 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.393327e-13 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 235.2083 mgc: 0.002658516 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.246125e-13 > test-basic-fits.R: outer mgc: 0.03589794 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2083 mgc: 0.002658516 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.541257e-13 > test-basic-fits.R: outer mgc: 0.03589794 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.9305 mgc: 0.01661139 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.578007e-13 > test-basic-fits.R: outer mgc: 0.2249827 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.4854 mgc: 0.01666319 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.229377e-13 > test-basic-fits.R: outer mgc: 0.2253912 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2062 mgc: 0.003388777 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.027505e-13 > test-basic-fits.R: outer mgc: 0.001990268 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2105 mgc: 0.00338539 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.513916e-13 > test-basic-fits.R: outer mgc: 0.001989501 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.4149 mgc: 0.0160169 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.271031e-14 > test-basic-fits.R: outer mgc: 0.6192763 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.0021 mgc: 0.01604897 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.399149e-13 > test-basic-fits.R: outer mgc: 0.6193958 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.8354 mgc: 0.008045512 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.819181e-14 > test-basic-fits.R: outer mgc: 0.1341343 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.5809 mgc: 0.008019368 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.542026e-14 > test-basic-fits.R: outer mgc: 0.1342744 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.393327e-13 > test-basic-fits.R: outer mgc: 1.688327e-11 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running nlminb_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 559.3547 mgc: 7.199084 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.465939e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 6.465939e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 56569.33 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 27902347 mgc: 1381.015 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.854092e-10 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 277089.9 mgc: 139.4406 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.94391e-11 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 2816.688 mgc: 13.95753 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.740815e-12 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 530.8698 mgc: 1.401856 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.419483e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.419483e-13 > test-basic-fits.R: outer mgc: 1273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 529.5951 mgc: 0.04208811 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.408257e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 526.1232 mgc: 0.1260967 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.664139e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 517.486 mgc: 0.5018048 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.905906e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.905906e-13 > test-basic-fits.R: outer mgc: 24820.02 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 492.06 mgc: 1.227631 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.168277e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.168277e-13 > test-basic-fits.R: outer mgc: 26004.83 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 481.0833 mgc: 1.286298 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.191862e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.191862e-13 > test-basic-fits.R: outer mgc: 19430.3 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 479.4845 mgc: 0.6976474 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.938973e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.938973e-13 > test-basic-fits.R: outer mgc: 5033.068 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 481.0613 mgc: 0.3650927 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.554757e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.554757e-13 > test-basic-fits.R: outer mgc: 2810.923 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 469.3332 mgc: 0.3214111 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.826684e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.826684e-13 > test-basic-fits.R: outer mgc: 474.8056 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 463.6658 mgc: 0.2285358 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.187194e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.7965 mgc: 0.4317725 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.404427e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.404427e-13 > test-basic-fits.R: outer mgc: 6253.602 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 439.5823 mgc: 0.8695843 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.877449e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 448.4607 mgc: 0.6604755 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.567073e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 451.7387 mgc: 0.5843333 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.999397e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 452.8024 mgc: 0.5597457 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.225863e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 453.1284 mgc: 0.5522218 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.685609e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.7747 mgc: 0.3042555 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.959426e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.959426e-13 > test-basic-fits.R: outer mgc: 6107.439 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.3587 mgc: 0.1501913 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.0523e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.0523e-13 > test-basic-fits.R: outer mgc: 61.63476 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.3627 mgc: 0.005963955 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.239465e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.382 mgc: 0.01787738 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.071873e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.5679 mgc: 0.07128428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.682693e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.682693e-13 > test-basic-fits.R: outer mgc: 2488.894 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 449.6929 mgc: 0.07609034 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.085356e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.085356e-13 > test-basic-fits.R: outer mgc: 626.5097 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 448.9245 mgc: 0.02748108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.78372e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 446.6362 mgc: 0.0434958 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.024653e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 437.5433 mgc: 0.1746564 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.106402e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 402.1076 mgc: 0.7106222 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.398169e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 5.398169e-13 > test-basic-fits.R: outer mgc: 1218.44 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 561.1728 mgc: 1.202659 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.312671e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.312671e-13 > test-basic-fits.R: outer mgc: 657.8356 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 427.9642 mgc: 1.506503 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.681728e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: -84.79702 mgc: 10.97515 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.399058e-12 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 5.681728e-13 > test-basic-fits.R: outer mgc: 702.0894 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 324.0857 mgc: 1.997476 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.013953e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.013953e-13 > test-basic-fits.R: outer mgc: 2786.819 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 391.5527 mgc: 4.080597 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.380908e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 353.2776 mgc: 1.471073 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.297286e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.297286e-13 > test-basic-fits.R: outer mgc: 682.1724 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 319.6854 mgc: 1.022115 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.236363e-13 > test-basic-fits.R: iter: 1 mgc: 1.236363e-13 > test-basic-fits.R: outer mgc: 3052.84 > test-basic-fits.R: iter: 1 value: 278.0119 mgc: 1.497242 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.068032e-13 > test-basic-fits.R: iter: 1 mgc: 1.068032e-13 > test-basic-fits.R: outer mgc: 1430.854 > test-basic-fits.R: iter: 1 value: 204.4349 mgc: 2.152053 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.572787e-13 > test-basic-fits.R: iter: 1 value: 243.9276 mgc: 0.951532 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.101483e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.101483e-13 > test-basic-fits.R: outer mgc: 173.5428 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 243.2878 mgc: 0.2778673 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.050909e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.050909e-13 > test-basic-fits.R: outer mgc: 243.2674 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 239.5609 mgc: 0.2628378 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.6679e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.6679e-13 > test-basic-fits.R: outer mgc: 30.15947 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 243.2095 mgc: 0.05082846 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.983895e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.983895e-14 > test-basic-fits.R: outer mgc: 12.99486 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9389 mgc: 0.02745404 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.102187e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.102187e-13 > test-basic-fits.R: outer mgc: 3.260848 > test-basic-fits.R: iter: 1 value: 241.9105 mgc: 0.004977464 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.30183e-13 > test-basic-fits.R: iter: 1 mgc: 1.30183e-13 > test-basic-fits.R: outer mgc: 0.2557589 > test-basic-fits.R: iter: 1 value: 241.9433 mgc: 0.001590403 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.17361e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.17361e-13 > test-basic-fits.R: outer mgc: 0.02246359 > test-basic-fits.R: iter: 1 value: 241.9449 mgc: 3.888571e-05 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.302873e-13 > test-basic-fits.R: iter: 1 mgc: 1.302873e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0003993413 > test-basic-fits.R: iter: 1 mgc: 1.302873e-13 > test-basic-fits.R: iter: 1 mgc: 1.302873e-13 > test-basic-fits.R: outer mgc: 0.0003993413 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9449 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.883999e-13 > test-basic-fits.R: outer mgc: 10.41578 > test-basic-fits.R: iter: 1 value: 241.9449 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 9.655645e-14 > test-basic-fits.R: outer mgc: 10.41499 > test-basic-fits.R: iter: 1 > test-basic-fits.R: > test-basic-fits.R: value: 241.9472 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: > test-basic-fits.R: 1.097829e-13 > test-basic-fits.R: outer mgc: 420.1269 > test-basic-fits.R: iter: 1 value: 241.9472 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.489423e-13 > test-basic-fits.R: outer mgc: 420.1261 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1881 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.053154e-13 > test-basic-fits.R: outer mgc: 4715.552 > test-basic-fits.R: iter: 1 value: 242.1881 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.863642e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4468 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.332583e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4468 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.627223e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 value: 242.666 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.409856e-13 > test-basic-fits.R: outer mgc: 0.4409364 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2231 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.290748e-13 > test-basic-fits.R: outer mgc: 0.4432772 > test-basic-fits.R: iter: 1 value: 242.1439 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.535853e-13 > test-basic-fits.R: outer mgc: 0.6367845 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7464 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.637596e-13 > test-basic-fits.R: outer mgc: 0.6369055 > test-basic-fits.R: iter: 1 value: 241.579 mgc: 0.007910208 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.627223e-13 > test-basic-fits.R: outer mgc: 0.4539012 > test-basic-fits.R: iter: 1 value: 242.3106 mgc: 0.007885427 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.513781e-13 > test-basic-fits.R: outer mgc: 0.4511987 > test-basic-fits.R: iter: 1 value: 241.945 mgc: 3.670467e-06 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.429006e-13 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.304197e-13 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: iter: 1 value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 9.935338e-14 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: iter: 1 value: 241.9473 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.259457e-13 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: iter: 1 value: 241.9473 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.840803e-14 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: iter: 1 value: 242.1882 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.229034e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1882 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.153936e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 value: 265.4469 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.887088e-14 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 value: 265.4469 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.348668e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 value: 242.6661 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.209946e-13 > test-basic-fits.R: outer mgc: 0.4413403 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2232 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.032652e-13 > test-basic-fits.R: outer mgc: 0.4428824 > test-basic-fits.R: iter: 1 value: 242.144 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.364068e-13 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: iter: 1 value: 241.7465 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.192098e-13 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5791 mgc: 0.007910209 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.591772e-13 > test-basic-fits.R: outer mgc: 0.4535091 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3107 mgc: 0.007885428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.710721e-13 > test-basic-fits.R: outer mgc: 0.4516052 > test-basic-fits.R: iter: 1 mgc: 1.429006e-13 > test-basic-fits.R: outer mgc: 1.2346e-09 > test-deviance-residuals.R: Student-t degrees of freedom parameter will be estimated. This used to be fixed at 3 by default. To fix it, supply a value to `df` (e.g., `df = 3`). > test-deviance-residuals.R: Student-t degrees of freedom parameter fixed at 7.8103073591526. To estimate it, set `df = NULL`. > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-deviance-residuals.R: Student-t degrees of freedom parameter fixed at 7.8103073591526. To estimate it, set `df = NULL`. > test-basic-fits.R: Running nlminb_loop #1 > test-dsem.R: > test-dsem.R: Attaching package: 'dsem' > test-dsem.R: > test-dsem.R: The following objects are masked from 'package:tinyVAST': > test-dsem.R: > test-dsem.R: bering_sea, cAIC, make_dsem_ram > test-dsem.R: > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 559.3547 mgc: 7.199084 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.465939e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 6.465939e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 56569.33 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 27902347 mgc: 1381.015 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.854092e-10 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 277089.9 mgc: 139.4406 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.94391e-11 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 2816.688 mgc: 13.95753 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.740815e-12 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 530.8698 mgc: 1.401856 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.419483e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.419483e-13 > test-basic-fits.R: outer mgc: 1273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 529.5951 mgc: 0.04208811 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.408257e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 526.1232 mgc: 0.1260967 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.664139e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 517.486 mgc: 0.5018048 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.905906e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.905906e-13 > test-basic-fits.R: outer mgc: 24820.02 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 492.06 mgc: 1.227631 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.168277e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.168277e-13 > test-basic-fits.R: outer mgc: 26004.83 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 481.0833 mgc: 1.286298 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.191862e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.191862e-13 > test-basic-fits.R: outer mgc: 19430.3 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 479.4845 mgc: 0.6976474 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.938973e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.938973e-13 > test-basic-fits.R: outer mgc: 5033.068 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 481.0613 mgc: 0.3650927 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.554757e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.554757e-13 > test-basic-fits.R: outer mgc: 2810.923 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 469.3332 mgc: 0.3214111 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.826684e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.826684e-13 > test-basic-fits.R: outer mgc: 474.8056 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 463.6658 mgc: 0.2285358 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.187194e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.7965 mgc: 0.4317725 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.404427e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.404427e-13 > test-basic-fits.R: outer mgc: 6253.602 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 439.5823 mgc: 0.8695843 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.877449e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 448.4607 mgc: 0.6604755 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.567073e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 451.7387 mgc: 0.5843333 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.999397e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 452.8024 mgc: 0.5597457 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.225863e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 453.1284 mgc: 0.5522218 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.685609e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.7747 mgc: 0.3042555 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.959426e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.959426e-13 > test-basic-fits.R: outer mgc: 6107.439 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.3587 mgc: 0.1501913 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.0523e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.0523e-13 > test-basic-fits.R: outer mgc: 61.63476 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.3627 mgc: 0.005963955 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.239465e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.382 mgc: 0.01787738 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.071873e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 450.5679 mgc: 0.07128428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.682693e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.682693e-13 > test-basic-fits.R: outer mgc: 2488.894 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 449.6929 mgc: 0.07609034 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.085356e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.085356e-13 > test-basic-fits.R: outer mgc: 626.5097 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 448.9245 mgc: 0.02748108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.78372e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 446.6362 mgc: 0.0434958 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.024653e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 437.5433 mgc: 0.1746564 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.106402e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 402.1076 mgc: 0.7106222 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.398169e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 5.398169e-13 > test-basic-fits.R: outer mgc: 1218.44 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 561.1728 mgc: 1.202659 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.312671e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.312671e-13 > test-basic-fits.R: outer mgc: 657.8356 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 427.9642 mgc: 1.506503 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.681728e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: -84.79702 mgc: 10.97515 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.399058e-12 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 5.681728e-13 > test-basic-fits.R: outer mgc: 702.0894 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 324.0857 mgc: 1.997476 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.013953e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.013953e-13 > test-dsem.R: Read 1 record > test-basic-fits.R: outer mgc: 2786.819 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 391.5527 mgc: 4.080597 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.380908e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 353.2776 mgc: 1.471073 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.297286e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.297286e-13 > test-basic-fits.R: outer mgc: 682.1724 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 319.6854 mgc: 1.022115 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.236363e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.236363e-13 > test-basic-fits.R: outer mgc: 3052.84 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 278.0119 mgc: 1.497242 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.068032e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.068032e-13 > test-dsem.R: List of estimated fixed and random effects: > test-basic-fits.R: outer mgc: 1430.854 > test-basic-fits.R: iter: 1 > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 lnsigma_j 2 Fixed > test-dsem.R: 3 mu_j 2 Fixed > test-dsem.R: 4 x_tj 200 Random > test-dsem.R: Read 1 record > test-basic-fits.R: value: 204.4349 mgc: 2.152053 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.572787e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 243.9276 mgc: 0.951532 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.101483e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.101483e-13 > test-basic-fits.R: outer mgc: 173.5428 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 243.2878 mgc: 0.2778673 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.050909e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.050909e-13 > test-basic-fits.R: outer mgc: 243.2674 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 239.5609 mgc: 0.2628378 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.6679e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.6679e-13 > test-dsem.R: List of estimated fixed and random effects: > test-dsem.R: > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 mu_j 2 Fixed > test-dsem.R: 3 x_tj 200 Random > test-dsem.R: Running nlminb_loop #1 > test-basic-fits.R: outer mgc: 30.15947 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 243.2095 mgc: 0.05082846 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.983895e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.983895e-14 > test-basic-fits.R: outer mgc: 12.99486 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9389 mgc: 0.02745404 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.102187e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.102187e-13 > test-basic-fits.R: outer mgc: 3.260848 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9105 mgc: 0.004977464 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.30183e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.30183e-13 > test-basic-fits.R: outer mgc: 0.2557589 > test-basic-fits.R: iter: 1 > test-dsem.R: Running newton_loop #1 > test-basic-fits.R: value: 241.9433 mgc: 0.001590403 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.17361e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.17361e-13 > test-basic-fits.R: outer mgc: 0.02246359 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9449 mgc: 3.888571e-05 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.302873e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.302873e-13 > test-basic-fits.R: outer mgc: 0.0003993413 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.302873e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.302873e-13 > test-basic-fits.R: outer mgc: 0.0003993413 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9449 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.883999e-13 > test-basic-fits.R: outer mgc: 10.41578 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9449 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.655645e-14 > test-basic-fits.R: outer mgc: 10.41499 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9472 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.097829e-13 > test-basic-fits.R: outer mgc: 420.1269 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9472 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.489423e-13 > test-basic-fits.R: outer mgc: 420.1261 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1881 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.053154e-13 > test-basic-fits.R: outer mgc: 4715.552 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1881 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.863642e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4468 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.332583e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4468 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.627223e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.666 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.409856e-13 > test-basic-fits.R: outer mgc: 0.4409364 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2231 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.290748e-13 > test-basic-fits.R: outer mgc: 0.4432772 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1439 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.535853e-13 > test-basic-fits.R: outer mgc: 0.6367845 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7464 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.637596e-13 > test-basic-fits.R: outer mgc: 0.6369055 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.579 mgc: 0.007910208 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.627223e-13 > test-basic-fits.R: outer mgc: 0.4539012 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3106 mgc: 0.007885427 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.513781e-13 > test-basic-fits.R: outer mgc: 0.4511987 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 3.670467e-06 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.429006e-13 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.304197e-13 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.935338e-14 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9473 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.259457e-13 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9473 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.840803e-14 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1882 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.229034e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1882 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.153936e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4469 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.887088e-14 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4469 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.348668e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6661 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.209946e-13 > test-basic-fits.R: outer mgc: 0.4413403 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2232 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.032652e-13 > test-basic-fits.R: outer mgc: 0.4428824 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.144 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.364068e-13 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7465 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.192098e-13 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5791 mgc: 0.007910209 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.591772e-13 > test-basic-fits.R: outer mgc: 0.4535091 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3107 mgc: 0.007885428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.710721e-13 > test-basic-fits.R: outer mgc: 0.4516052 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.429006e-13 > test-basic-fits.R: outer mgc: 1.2346e-09 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running nlminb_loop #1 > test-dsem.R: Read 1 record > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 559.3547 mgc: 7.199084 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.465939e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 6.465939e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-dsem.R: List of estimated fixed and random effects: > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 lnsigma_j 2 Fixed > test-dsem.R: 3 mu_j 2 Fixed > test-dsem.R: 4 x_tj 200 Random > test-dsem.R: Read 1 record > test-basic-fits.R: outer mgc: 329.5854 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 856.5155 mgc: 3.718238 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.935994e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 585.8798 mgc: 2.341008 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.649374e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.649374e-13 > test-basic-fits.R: outer mgc: 68.05303 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 364.7179 mgc: 1.224105 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.452816e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 96.08624 mgc: 3.264987 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.078389e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.452816e-13 > test-basic-fits.R: outer mgc: 18.1942 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 428.0625 mgc: 2.06398 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.554155e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.554155e-13 > test-dsem.R: List of estimated fixed and random effects: > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 mu_j 2 Fixed > test-dsem.R: 3 x_tj 200 Random > test-dsem.R: Running nlminb_loop #1 > test-basic-fits.R: outer mgc: 29.9166 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 359.4326 mgc: 1.009323 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.01966e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 167.1553 mgc: 2.099491 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.905531e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.905531e-13 > test-basic-fits.R: outer mgc: 43.11229 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 183.1241 mgc: 0.9276268 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.776506e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.776506e-13 > test-basic-fits.R: outer mgc: 37.29186 > test-basic-fits.R: iter: 1 > test-dsem.R: Running newton_loop #1 > test-basic-fits.R: value: 149.4461 mgc: 0.4124796 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.421878e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 80.1066 mgc: 1.330241 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.002024e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.002024e-13 > test-basic-fits.R: outer mgc: 39.28674 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 182.3264 mgc: 0.9239658 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.217275e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 8.217275e-13 > test-basic-fits.R: outer mgc: 13.80786 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 188.9997 mgc: 15.24668 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.903279e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.903279e-13 > test-basic-fits.R: outer mgc: 56.23285 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 156.3828 mgc: 2.881656 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.440186e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 6.440186e-14 > test-basic-fits.R: outer mgc: 25.44009 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.5268 mgc: 1.793639 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.210093e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 7.210093e-14 > test-basic-fits.R: outer mgc: 7.885275 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 230.429 mgc: 2.05219 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.632239e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 7.632239e-14 > test-basic-fits.R: outer mgc: 4.040772 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.4812 mgc: 2.401893 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.524564e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.524564e-13 > test-basic-fits.R: outer mgc: 3.719265 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 238.8186 mgc: 0.4225346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.183807e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.183807e-13 > test-basic-fits.R: outer mgc: 0.7612068 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7781 mgc: 0.04036797 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.466368e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.466368e-13 > test-basic-fits.R: outer mgc: 0.1442086 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.8703 mgc: 0.01728892 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.272276e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.272276e-13 > test-basic-fits.R: outer mgc: 0.06999749 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9471 mgc: 0.002052714 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.551608e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.551608e-13 > test-basic-fits.R: outer mgc: 0.00454186 > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 241.952 mgc: 0.0004135169 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.611211e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.611211e-13 > test-basic-fits.R: outer mgc: 0.0009494951 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 9.395532e-05 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.288653e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.288653e-13 > test-basic-fits.R: outer mgc: 0.0002300872 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.288653e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.288653e-13 > test-basic-fits.R: outer mgc: 0.0002300872 > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.002536129 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.709445e-14 > test-basic-fits.R: outer mgc: 0.03431448 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.002536129 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.206695e-13 > test-basic-fits.R: outer mgc: 0.03423211 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001581458 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.460837e-13 > test-basic-fits.R: outer mgc: 0.0006446326 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001581458 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.809513e-13 > test-basic-fits.R: outer mgc: 0.0006324035 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001633024 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.070387e-13 > test-basic-fits.R: outer mgc: 0.0006472365 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001633024 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.439379e-13 > test-basic-fits.R: outer mgc: 0.0006488188 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001434925 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.953169e-14 > test-basic-fits.R: outer mgc: 0.0006098311 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001434925 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.979146e-13 > test-basic-fits.R: outer mgc: 0.0006190326 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6678 mgc: 0.01575898 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.050166e-13 > test-basic-fits.R: outer mgc: 0.2221437 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2249 mgc: 0.01580783 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.217038e-13 > test-basic-fits.R: outer mgc: 0.2229958 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1456 mgc: 0.01528342 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.653303e-13 > test-basic-fits.R: outer mgc: 0.636537 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7482 mgc: 0.01531402 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.760182e-13 > test-basic-fits.R: outer mgc: 0.6371541 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5808 mgc: 0.007910189 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.898789e-14 > test-basic-fits.R: outer mgc: 0.1350653 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3124 mgc: 0.007885408 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.895166e-13 > test-basic-fits.R: outer mgc: 0.1356602 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 3.044544e-05 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.001424e-14 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.577445e-13 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.165535e-13 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001581462 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.163779e-13 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001581462 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.542448e-13 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001633028 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.016292e-13 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001633028 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.528728e-13 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001434929 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.395501e-13 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001434929 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.183829e-13 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6661 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.742745e-14 > test-basic-fits.R: outer mgc: 0.222374 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2232 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.147472e-13 > test-basic-fits.R: outer mgc: 0.2227659 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.144 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.306418e-13 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7465 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.693703e-13 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5791 mgc: 0.007910209 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.455652e-13 > test-basic-fits.R: outer mgc: 0.1352949 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3107 mgc: 0.007885428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.155162e-13 > test-basic-fits.R: outer mgc: 0.1354297 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.001424e-14 > test-basic-fits.R: outer mgc: 7.672857e-10 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running nlminb_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 559.3547 mgc: 7.199084 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.465939e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 6.465939e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 329.5854 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 856.5155 mgc: 3.718238 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.935994e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 585.8798 mgc: 2.341008 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.649374e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.649374e-13 > test-basic-fits.R: outer mgc: 68.05303 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 364.7179 mgc: 1.224105 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.452816e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 96.08624 mgc: 3.264987 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.078389e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.452816e-13 > test-basic-fits.R: outer mgc: 18.1942 > test-basic-fits.R: iter: 1 > test-basic-fits.R: > test-basic-fits.R: value: 428.0625 mgc: 2.06398 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.554155e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.554155e-13 > test-basic-fits.R: outer mgc: 29.9166 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 359.4326 mgc: 1.009323 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.01966e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 167.1553 mgc: 2.099491 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.905531e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.905531e-13 > test-basic-fits.R: outer mgc: 43.11229 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 183.1241 mgc: 0.9276268 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.776506e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.776506e-13 > test-basic-fits.R: outer mgc: 37.29186 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 149.4461 mgc: 0.4124796 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.421878e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 80.1066 mgc: 1.330241 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.002024e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.002024e-13 > test-basic-fits.R: outer mgc: 39.28674 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 182.3264 mgc: 0.9239658 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.217275e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 8.217275e-13 > test-basic-fits.R: outer mgc: 13.80786 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 188.9997 mgc: 15.24668 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.903279e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.903279e-13 > test-basic-fits.R: outer mgc: 56.23285 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 156.3828 mgc: 2.881656 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.440186e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 6.440186e-14 > test-basic-fits.R: outer mgc: 25.44009 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.5268 mgc: 1.793639 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.210093e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 7.210093e-14 > test-basic-fits.R: outer mgc: 7.885275 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 230.429 mgc: 2.05219 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.632239e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 7.632239e-14 > test-basic-fits.R: outer mgc: 4.040772 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.4812 mgc: 2.401893 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.524564e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.524564e-13 > test-basic-fits.R: outer mgc: 3.719265 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 238.8186 mgc: 0.4225346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.183807e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.183807e-13 > test-basic-fits.R: outer mgc: 0.7612068 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7781 mgc: 0.04036797 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.466368e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.466368e-13 > test-basic-fits.R: outer mgc: 0.1442086 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.8703 mgc: 0.01728892 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.272276e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.272276e-13 > test-basic-fits.R: outer mgc: 0.06999749 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9471 mgc: 0.002052714 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.551608e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.551608e-13 > test-basic-fits.R: outer mgc: 0.00454186 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.952 mgc: 0.0004135169 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.611211e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.611211e-13 > test-basic-fits.R: outer mgc: 0.0009494951 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 9.395532e-05 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.288653e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.288653e-13 > test-basic-fits.R: outer mgc: 0.0002300872 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.288653e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.288653e-13 > test-basic-fits.R: outer mgc: 0.0002300872 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.002536129 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.709445e-14 > test-basic-fits.R: outer mgc: 0.03431448 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.002536129 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.206695e-13 > test-basic-fits.R: outer mgc: 0.03423211 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001581458 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.460837e-13 > test-basic-fits.R: outer mgc: 0.0006446326 > test-basic-fits.R: iter: 1 > test-basic-fits.R: > test-basic-fits.R: value: 241.9467 mgc: 0.0001581458 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.809513e-13 > test-basic-fits.R: outer mgc: 0.0006324035 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001633024 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.070387e-13 > test-basic-fits.R: outer mgc: 0.0006472365 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001633024 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.439379e-13 > test-basic-fits.R: outer mgc: 0.0006488188 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001434925 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.953169e-14 > test-basic-fits.R: outer mgc: 0.0006098311 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9467 mgc: 0.0001434925 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.979146e-13 > test-basic-fits.R: outer mgc: 0.0006190326 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6678 mgc: 0.01575898 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.050166e-13 > test-basic-fits.R: outer mgc: 0.2221437 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2249 mgc: 0.01580783 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.217038e-13 > test-basic-fits.R: outer mgc: 0.2229958 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1456 mgc: 0.01528342 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.653303e-13 > test-basic-fits.R: outer mgc: 0.636537 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7482 mgc: 0.01531402 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.760182e-13 > test-basic-fits.R: outer mgc: 0.6371541 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5808 mgc: 0.007910189 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.898789e-14 > test-basic-fits.R: outer mgc: 0.1350653 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3124 mgc: 0.007885408 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.895166e-13 > test-basic-fits.R: outer mgc: 0.1356602 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 3.044544e-05 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.001424e-14 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.577445e-13 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.165535e-13 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001581462 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.163779e-13 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001581462 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.542448e-13 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001633028 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.016292e-13 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001633028 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.528728e-13 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001434929 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.395501e-13 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001434929 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.183829e-13 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6661 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.742745e-14 > test-basic-fits.R: outer mgc: 0.222374 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2232 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.147472e-13 > test-basic-fits.R: outer mgc: 0.2227659 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.144 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.306418e-13 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7465 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.693703e-13 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5791 mgc: 0.007910209 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.455652e-13 > test-basic-fits.R: outer mgc: 0.1352949 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3107 mgc: 0.007885428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.155162e-13 > test-basic-fits.R: outer mgc: 0.1354297 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.001424e-14 > test-basic-fits.R: outer mgc: 7.672857e-10 > test-mesh.R: Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.1; sf_use_s2() is TRUE > test-platform.R: Call: > test-platform.R: tinyVAST(formula = n ~ s(w), data = Data, space_term = "", spatial_domain = mesh, > test-platform.R: control = tinyVASTcontrol(getJointPrecision = TRUE)) > test-platform.R: > test-platform.R: Run time: > test-platform.R: Time difference of 1.0874 secs > test-platform.R: > test-platform.R: Family: > test-platform.R: $obs > test-platform.R: > test-platform.R: Family: gaussian > test-platform.R: Link function: identity > test-platform.R: > test-platform.R: > test-platform.R: > test-platform.R: > test-platform.R: sdreport(.) result > test-platform.R: Estimate Std. Error > test-platform.R: alpha_j 0.0009404264 0.1178307 > test-platform.R: theta_z 1.0062973954 0.1055913 > test-platform.R: log_lambda -2.4632150167 0.6906784 > test-platform.R: log_sigma -0.2433082708 0.1604643 > test-platform.R: log_kappa 0.1683191083 0.2109439 > test-platform.R: Maximum gradient component: 0.0004330321 > test-platform.R: > test-platform.R: Proportion conditional deviance explained: > test-platform.R: [1] 0.8706393 > test-platform.R: > test-platform.R: space_term: > test-platform.R: heads to from parameter start Estimate Std_Error z_value p_value > test-platform.R: 1 2 n n 1 1.006297 0.1055913 9.530119 1.571033e-21 > test-platform.R: > test-platform.R: Fixed terms: > test-platform.R: Estimate Std_Error z_value p_value > test-platform.R: (Intercept) 0.0009404264 0.1178307 0.007981165 0.993632 > test-platform.R: > test-platform.R: Sanity check: > test-platform.R: v Non-linear minimizer suggests successful convergence > test-platform.R: v Hessian matrix is positive definite > test-platform.R: v No extreme or very small eigenvalues detected > test-platform.R: v No gradients with respect to fixed effects are >= 0.001 > test-platform.R: v No fixed-effect standard errors are NA > test-platform.R: v No standard errors look unreasonably large > test-platform.R: > test-index-standardization.R: Loading required package: VAST > test-sfnetworks.R: Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.1; sf_use_s2() is TRUE > test-smooths.R: Gu & Wahba 4 term additive model > test-smooths.R: Gu & Wahba 4 term additive model > test-smooths.R: Gu & Wahba 4 term additive model [ FAIL 0 | WARN 4 | SKIP 20 | PASS 120 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-deviance-residuals.R:3:3', 'test-deviance-residuals.R:37:3', 'test-deviance-residuals.R:116:3', 'test-deviance-residuals.R:151:3', 'test-deviance-residuals.R:189:3', 'test-deviance-residuals.R:228:3', 'test-deviance-residuals.R:255:3', 'test-deviance-residuals.R:313:3', 'test-deviance-residuals.R:352:3', 'test-basic-fits.R:41:3', 'test-smooths.R:2:3', 'test-smooths.R:151:3', 'test-smooths.R:167:3', 'test-smooths.R:177:3', 'test-smooths.R:194:3', 'test-smooths.R:214:3', 'test-smooths.R:231:3', 'test-smooths.R:248:3', 'test-smooths.R:268:3' • require(VAST) is not TRUE (1): 'test-index-standardization.R:77:3' [ FAIL 0 | WARN 4 | SKIP 20 | PASS 120 ] > > # Run from local directory > # testthat::test_dir( "C:/Users/James.Thorson/Desktop/Git/tinyVAST/tests/testthat/", reporter="check" ) > # testthat::test_local(path = "C:/Users/James.Thorson/Desktop/Git/tinyVAST" ) > > proc.time() user system elapsed 7.51 0.70 34.60