R Under development (unstable) (2025-12-19 r89206 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > > library(testthat) > library(tinyVAST) > > # Run tests > testthat::test_check("tinyVAST") Starting 2 test processes. > test-SAR.R: > test-SAR.R: Attaching package: 'igraph' > test-SAR.R: > test-SAR.R: The following objects are masked from 'package:stats': > test-SAR.R: > test-SAR.R: decompose, spectrum > test-SAR.R: > test-SAR.R: The following object is masked from 'package:testthat': > test-SAR.R: > test-SAR.R: compare > test-SAR.R: > test-SAR.R: The following object is masked from 'package:base': > test-SAR.R: > test-SAR.R: union > test-SAR.R: > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running nlminb_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 159.572 mgc: 189.7898 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.410294e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.410294e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 16.30222 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 312.584 mgc: 91.72584 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.700062e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 152.2534 mgc: 5.291442 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.121304e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.121304e-14 > test-basic-fits.R: outer mgc: 25.06034 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 201.9996 mgc: 1.000916 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.021849e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 8.021849e-14 > test-basic-fits.R: outer mgc: 11.29012 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 205.1191 mgc: 5.665547 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.02705e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.02705e-13 > test-basic-fits.R: outer mgc: 17.88522 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 136.2235 mgc: 5.286382 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.201588e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.201588e-13 > test-basic-fits.R: outer mgc: 31.59115 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 230.1845 mgc: 8.805724 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.016269e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.016269e-13 > test-basic-fits.R: outer mgc: 6.133917 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 289.1492 mgc: 2.831896 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.22356e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 263.7689 mgc: 0.3796439 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.648675e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 247.2465 mgc: 0.5544032 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.773794e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 238.1789 mgc: 0.272793 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.710261e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.710261e-13 > test-basic-fits.R: outer mgc: 7.174622 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 229.0067 mgc: 0.7774098 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.213147e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.213147e-13 > test-basic-fits.R: outer mgc: 6.431114 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 231.122 mgc: 0.3407246 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.045345e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.045345e-13 > test-basic-fits.R: outer mgc: 5.543433 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 218.6772 mgc: 1.995836 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.225089e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 209.389 mgc: 2.237458 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.153341e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 182.9581 mgc: 3.964603 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.145638e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.145638e-13 > test-basic-fits.R: outer mgc: 6.677132 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 308.0827 mgc: 3.737692 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.100231e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.100231e-13 > test-basic-fits.R: outer mgc: 25.62028 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 207.6404 mgc: 9.374864 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.009754e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 293.7381 mgc: 3.510075 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.587826e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.587826e-13 > test-basic-fits.R: outer mgc: 3.36097 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 169.1983 mgc: 2.281001 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.224312e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 273.2999 mgc: 0.4018671 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.552827e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.552827e-13 > test-basic-fits.R: outer mgc: 8.479388 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 230.3702 mgc: 0.6844687 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.100326e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.100326e-13 > test-basic-fits.R: outer mgc: 3.687145 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.942 mgc: 1.118297 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.769489e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.769489e-14 > test-basic-fits.R: outer mgc: 1.358579 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 231.4418 mgc: 0.3438257 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.152182e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.152182e-13 > test-basic-fits.R: outer mgc: 1.018375 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.3854 mgc: 0.2255143 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.1284e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.1284e-13 > test-basic-fits.R: outer mgc: 1.867218 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 236.6548 mgc: 0.09989306 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.023124e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.023124e-13 > test-basic-fits.R: outer mgc: 0.250441 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.0667 mgc: 0.03097128 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.116843e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.116843e-13 > test-basic-fits.R: outer mgc: 0.02204659 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2197 mgc: 0.002599912 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.810292e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.810292e-14 > test-basic-fits.R: outer mgc: 0.00385951 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2093 mgc: 0.0002792987 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.185329e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.185329e-13 > test-basic-fits.R: outer mgc: 0.0001112612 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.185329e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.185329e-13 > test-basic-fits.R: outer mgc: 0.0001112612 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2094 mgc: 0.002658515 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.093101e-13 > test-basic-fits.R: outer mgc: 0.03588646 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2094 mgc: 0.002658515 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.366531e-14 > test-basic-fits.R: outer mgc: 0.03590914 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.9315 mgc: 0.01661136 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.292072e-13 > test-basic-fits.R: outer mgc: 0.2248713 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.4864 mgc: 0.01666316 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.347345e-13 > test-basic-fits.R: outer mgc: 0.2255023 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2072 mgc: 0.003388805 ustep: 1 > test-basic-fits.R: iter: > test-basic-fits.R: 2 > test-basic-fits.R: mgc: 1.048692e-13 > test-basic-fits.R: outer mgc: 0.002010431 > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 235.2115 mgc: 0.003385418 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.179015e-13 > test-basic-fits.R: outer mgc: 0.001969354 > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 235.4159 mgc: 0.01601689 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.017285e-13 > test-basic-fits.R: outer mgc: 0.6191648 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.0032 mgc: 0.01604895 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.568597e-13 > test-basic-fits.R: outer mgc: 0.6195069 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.8364 mgc: 0.008045506 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.008376e-13 > test-basic-fits.R: outer mgc: 0.1340234 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.582 mgc: 0.008019362 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.068508e-14 > test-basic-fits.R: outer mgc: 0.134386 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2083 mgc: 3.399628e-05 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.253509e-14 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2083 mgc: 0.002658516 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.514264e-13 > test-basic-fits.R: outer mgc: 0.03589794 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2083 mgc: 0.002658516 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.13307e-13 > test-basic-fits.R: outer mgc: 0.03589794 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.9305 mgc: 0.01661139 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.030524e-13 > test-basic-fits.R: outer mgc: 0.2249827 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.4854 mgc: 0.01666319 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.351011e-13 > test-basic-fits.R: outer mgc: 0.2253912 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2062 mgc: 0.003388777 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.418972e-13 > test-basic-fits.R: outer mgc: 0.001990268 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.2105 mgc: 0.00338539 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.09835e-13 > test-basic-fits.R: outer mgc: 0.001989501 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.4149 mgc: 0.0160169 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.035882e-13 > test-basic-fits.R: outer mgc: 0.6192763 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.0021 mgc: 0.01604897 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.241188e-13 > test-basic-fits.R: outer mgc: 0.6193958 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 234.8354 mgc: 0.008045512 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.333552e-13 > test-basic-fits.R: outer mgc: 0.1341343 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.5809 mgc: 0.008019368 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.505703e-13 > test-basic-fits.R: outer mgc: 0.1342744 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.253509e-14 > test-basic-fits.R: outer mgc: 1.545217e-10 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running nlminb_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 229.1158 mgc: 18.36883 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.606493e-13 > test-basic-fits.R: iter: 1 mgc: 1.606493e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 45526.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 23401442 mgc: 3547.736 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.418054e-11 > test-basic-fits.R: iter: 1 value: 230850.4 mgc: 356.0499 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 2.841887e-12 > test-basic-fits.R: iter: 1 value: 2125.043 mgc: 35.61778 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 2.877669e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 206.9751 mgc: 3.561906 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 7.271955e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 7.271955e-14 > test-basic-fits.R: outer mgc: 1297.447 > test-basic-fits.R: iter: 1 value: 205.9511 mgc: 0.1626795 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.440008e-14 > test-basic-fits.R: iter: 1 value: 203.0064 mgc: 0.1579071 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.047951e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 192.544 mgc: 0.630483 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.168766e-14 > test-basic-fits.R: iter: 1 value: 171.5786 mgc: 2.506192 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.078084e-13 > test-basic-fits.R: iter: 1 mgc: 1.078084e-13 > test-basic-fits.R: outer mgc: 979.0707 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 200.9406 mgc: 2.302235 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.089281e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 181.6044 mgc: 1.922047 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.051324e-14 > test-basic-fits.R: iter: 1 value: 177.7379 mgc: 1.841542 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 8.679521e-14 > test-basic-fits.R: iter: 1 value: 171.7717 mgc: 0.403124 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.738849e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.5685 mgc: 0.0746749 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.232726e-13 > test-basic-fits.R: iter: 1 mgc: 1.232726e-13 > test-basic-fits.R: outer mgc: 120.6027 > test-basic-fits.R: iter: 1 value: 171.5684 mgc: 0.009534459 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 9.513697e-14 > test-basic-fits.R: iter: 1 value: 171.5701 mgc: 0.02860299 ustep: 1 > test-basic-fits.R: iter: > test-basic-fits.R: 2 mgc: 5.836803e-14 > test-basic-fits.R: iter: 1 mgc: 5.836803e-14 > test-basic-fits.R: outer mgc: 501.7855 > test-basic-fits.R: iter: 1 value: 171.6312 mgc: 0.04093916 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.825405e-14 > test-basic-fits.R: iter: 1 mgc: 7.825405e-14 > test-basic-fits.R: outer mgc: 120.9747 > test-basic-fits.R: iter: 1 value: 171.757 mgc: 0.04030922 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 8.852139e-14 > test-basic-fits.R: iter: 1 value: 171.9645 mgc: 0.005101289 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 5.221382e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 172.9711 mgc: 0.02469798 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.668464e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 176.9947 mgc: 0.09786416 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.110789e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 193.0582 mgc: 0.3774688 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 8.047091e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 256.6679 mgc: 1.309505 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.044873e-13 > test-basic-fits.R: iter: 1 mgc: 1.044873e-13 > test-basic-fits.R: outer mgc: 1523.379 > test-basic-fits.R: iter: 1 value: 228.5997 mgc: 1.132859 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.132484e-13 > test-basic-fits.R: iter: 1 mgc: 1.132484e-13 > test-basic-fits.R: outer mgc: 847.3134 > test-basic-fits.R: iter: 1 value: 206.9686 mgc: 2.396176 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.286683e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 86.32841 mgc: 7.548715 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 2.059492e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.059492e-13 > test-basic-fits.R: outer mgc: 5402.563 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.5418 mgc: 1.993035 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 3.44852e-13 > test-basic-fits.R: iter: 1 mgc: 3.44852e-13 > test-basic-fits.R: outer mgc: 5699.796 > test-basic-fits.R: iter: 1 value: 136.7276 mgc: 11.31051 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.243481e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.8844 mgc: 3.418221 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.916704e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 252.3422 mgc: 1.514646 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 2.811993e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 254.6405 mgc: 1.062899 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 3.138662e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 254.9999 mgc: 0.9639573 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 3.965659e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 255.0697 mgc: 0.9427794 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 4.363052e-13 > test-basic-fits.R: iter: 1 value: 249.2345 mgc: 0.2448745 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 3.435263e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.435263e-13 > test-basic-fits.R: outer mgc: 1901.498 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.1857 mgc: 0.06184691 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.099335e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.099335e-13 > test-basic-fits.R: outer mgc: 37.31763 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.2846 mgc: 0.009178901 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.382539e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.5964 mgc: 0.02751519 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.002091e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.002091e-13 > test-basic-fits.R: outer mgc: 1120.677 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.4126 mgc: 0.04265367 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.329293e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.329293e-13 > test-basic-fits.R: outer mgc: 26.47448 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.2429 mgc: 0.01903038 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.86135e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 248.7206 mgc: 0.05793219 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.533718e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 246.4874 mgc: 0.2355762 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.614834e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.1483 mgc: 1.006982 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.375962e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 188.9085 mgc: 2.890976 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.624086e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.624086e-13 > test-basic-fits.R: outer mgc: 986.6554 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 101.4649 mgc: 5.996776 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.215159e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 159.1141 mgc: 2.091231 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.214553e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.214553e-13 > test-basic-fits.R: outer mgc: 1305.224 > test-basic-fits.R: iter: 1 > test-deviance-residuals.R: Student-t degrees of freedom parameter will be estimated. This used to be fixed at 3 by default. To fix it, supply a value to `df` (e.g., `df = 3`). > test-basic-fits.R: value: 198.4606 mgc: 0.967394 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.219909e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.219909e-13 > test-basic-fits.R: outer mgc: 285.0116 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 246.7252 mgc: 2.155119 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.093806e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.093806e-13 > test-basic-fits.R: outer mgc: 393.7679 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.8219 mgc: 0.3800973 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.562244e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.562244e-13 > test-basic-fits.R: outer mgc: 43.0603 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 243.178 mgc: 0.05330094 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.266828e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.266828e-13 > test-basic-fits.R: outer mgc: 4.780864 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.4818 mgc: 0.01305578 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.626759e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.626759e-13 > test-basic-fits.R: outer mgc: 2.035696 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9298 mgc: 0.0105912 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.153956e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.153956e-13 > test-basic-fits.R: outer mgc: 0.3817989 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9429 mgc: 0.0002136745 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.571124e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.571124e-13 > test-basic-fits.R: outer mgc: 0.0486305 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.571124e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.571124e-13 > test-basic-fits.R: outer mgc: 0.0486305 > test-basic-fits.R: iter: 1 value: 241.9429 mgc: 0.002536108 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.211278e-13 > test-basic-fits.R: outer mgc: 10.46405 > test-basic-fits.R: iter: 1 value: 241.9429 mgc: 0.002536108 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.462522e-13 > test-basic-fits.R: outer mgc: 10.36678 > test-basic-fits.R: iter: 1 value: 241.9452 mgc: 0.02536108 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.377878e-13 > test-basic-fits.R: outer mgc: 420.1751 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9452 mgc: 0.02536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.429015e-13 > test-basic-fits.R: outer mgc: 420.0778 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1861 mgc: 0.2536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.448532e-13 > test-deviance-residuals.R: Student-t degrees of freedom parameter fixed at 7.8103073591526. To estimate it, set `df = NULL`. > test-basic-fits.R: outer mgc: 4715.599 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1861 mgc: 0.2536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.902304e-13 > test-basic-fits.R: outer mgc: 4715.502 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4448 mgc: 2.536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.208991e-13 > test-basic-fits.R: outer mgc: 47003.82 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4447 mgc: 2.536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.844573e-13 > test-basic-fits.R: outer mgc: 47003.72 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.664 mgc: 0.01575907 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.171202e-13 > test-basic-fits.R: outer mgc: 0.3928144 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2211 mgc: 0.01580792 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.411577e-13 > test-basic-fits.R: outer mgc: 0.4916178 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1418 mgc: 0.0152834 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.504644e-13 > test-basic-fits.R: outer mgc: 0.6368832 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7444 mgc: 0.01531399 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.090135e-13 > test-basic-fits.R: outer mgc: 0.6368188 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.577 mgc: 0.007910128 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.430502e-13 > test-basic-fits.R: outer mgc: 0.502248 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3086 mgc: 0.007885347 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.419866e-13 > test-basic-fits.R: outer mgc: 0.403083 > test-basic-fits.R: iter: 1 > test-basic-fits.R: Running sdreport > test-basic-fits.R: value: 241.945 mgc: 0.0001740186 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.429006e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.428131e-13 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: iter: 1 value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.277751e-13 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9473 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.135642e-13 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9473 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.349294e-13 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1882 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.292963e-13 > test-deviance-residuals.R: Student-t degrees of freedom parameter fixed at 7.8103073591526. To estimate it, set `df = NULL`. > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1882 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.589409e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4469 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.078922e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 value: 265.4469 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.605952e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6661 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.22754e-13 > test-basic-fits.R: outer mgc: 0.4413401 > test-basic-fits.R: iter: 1 value: 241.2232 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.487302e-13 > test-basic-fits.R: outer mgc: 0.4428826 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.144 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.493333e-13 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: iter: 1 value: > test-basic-fits.R: 241.7465 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.414441e-13 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: iter: 1 value: 241.5791 mgc: 0.007910209 ustep: 1 > test-basic-fits.R: iter: 2 mgc: 1.173456e-13 > test-basic-fits.R: outer mgc: 0.4535092 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3107 mgc: 0.007885428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.506788e-13 > test-basic-fits.R: outer mgc: 0.4516051 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.429006e-13 > test-basic-fits.R: outer mgc: 1.71683e-07 > test-dsem.R: > test-dsem.R: Attaching package: 'dsem' > test-dsem.R: > test-dsem.R: The following objects are masked from 'package:tinyVAST': > test-dsem.R: > test-dsem.R: bering_sea, cAIC, make_dsem_ram > test-dsem.R: > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running nlminb_loop #1 > test-dsem.R: Read 1 record > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 229.1158 mgc: 18.36883 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.606493e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.606493e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-dsem.R: List of estimated fixed and random effects: > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 lnsigma_j 2 Fixed > test-dsem.R: 3 mu_j 2 Fixed > test-dsem.R: 4 x_tj 200 Random > test-dsem.R: Read 1 record > test-basic-fits.R: outer mgc: 45526.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 23401442 mgc: 3547.736 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.418054e-11 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 230850.4 mgc: 356.0499 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.841887e-12 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 2125.043 mgc: 35.61778 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.877669e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 206.9751 mgc: 3.561906 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.271955e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 7.271955e-14 > test-basic-fits.R: outer mgc: 1297.447 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 205.9511 mgc: 0.1626795 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.440008e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 203.0064 mgc: 0.1579071 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.047951e-13 > test-basic-fits.R: iter: 1 > test-dsem.R: List of estimated fixed and random effects: > test-basic-fits.R: value: 192.544 mgc: 0.630483 ustep: 1 > test-basic-fits.R: iter: 2 > test-dsem.R: Running nlminb_loop #1 > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 mu_j 2 Fixed > test-dsem.R: 3 x_tj 200 Random > test-basic-fits.R: mgc: 8.168766e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.5786 mgc: 2.506192 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.078084e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.078084e-13 > test-basic-fits.R: outer mgc: 979.0707 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 200.9406 mgc: 2.302235 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.089281e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 181.6044 mgc: 1.922047 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.051324e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 177.7379 mgc: 1.841542 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.679521e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.7717 mgc: 0.403124 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.738849e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.5685 mgc: 0.0746749 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.232726e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.232726e-13 > test-dsem.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 120.6027 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.5684 mgc: 0.009534459 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.513697e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.5701 mgc: 0.02860299 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.836803e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 5.836803e-14 > test-basic-fits.R: outer mgc: 501.7855 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.6312 mgc: 0.04093916 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 7.825405e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 7.825405e-14 > test-basic-fits.R: outer mgc: 120.9747 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.757 mgc: 0.04030922 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.852139e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 171.9645 mgc: 0.005101289 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.221382e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 172.9711 mgc: 0.02469798 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 5.668464e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 176.9947 mgc: 0.09786416 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.110789e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 193.0582 mgc: 0.3774688 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.047091e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 256.6679 mgc: 1.309505 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.044873e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.044873e-13 > test-basic-fits.R: outer mgc: 1523.379 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 228.5997 mgc: 1.132859 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.132484e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.132484e-13 > test-basic-fits.R: outer mgc: 847.3134 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 206.9686 mgc: 2.396176 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.286683e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 86.32841 mgc: 7.548715 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.059492e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.059492e-13 > test-basic-fits.R: outer mgc: 5402.563 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.5418 mgc: 1.993035 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.44852e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.44852e-13 > test-basic-fits.R: outer mgc: 5699.796 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 136.7276 mgc: 11.31051 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.243481e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.8844 mgc: 3.418221 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.916704e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 252.3422 mgc: 1.514646 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.811993e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 254.6405 mgc: 1.062899 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.138662e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 254.9999 mgc: 0.9639573 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.965659e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 255.0697 mgc: 0.9427794 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.363052e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.2345 mgc: 0.2448745 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.435263e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.435263e-13 > test-basic-fits.R: outer mgc: 1901.498 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.1857 mgc: 0.06184691 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.099335e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.099335e-13 > test-basic-fits.R: outer mgc: 37.31763 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.2846 mgc: 0.009178901 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.382539e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.5964 mgc: 0.02751519 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.002091e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 4.002091e-13 > test-basic-fits.R: outer mgc: 1120.677 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.4126 mgc: 0.04265367 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.329293e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 3.329293e-13 > test-basic-fits.R: outer mgc: 26.47448 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 249.2429 mgc: 0.01903038 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.86135e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 248.7206 mgc: 0.05793219 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.533718e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 246.4874 mgc: 0.2355762 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.614834e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 235.1483 mgc: 1.006982 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.375962e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 188.9085 mgc: 2.890976 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.624086e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.624086e-13 > test-basic-fits.R: outer mgc: 986.6554 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 101.4649 mgc: 5.996776 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.215159e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 159.1141 mgc: 2.091231 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.214553e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.214553e-13 > test-basic-fits.R: outer mgc: 1305.224 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 198.4606 mgc: 0.967394 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.219909e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.219909e-13 > test-basic-fits.R: outer mgc: 285.0116 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 246.7252 mgc: 2.155119 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.093806e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.093806e-13 > test-basic-fits.R: outer mgc: 393.7679 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.8219 mgc: 0.3800973 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.562244e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.562244e-13 > test-basic-fits.R: outer mgc: 43.0603 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 243.178 mgc: 0.05330094 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.266828e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.266828e-13 > test-basic-fits.R: outer mgc: 4.780864 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.4818 mgc: 0.01305578 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.626759e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.626759e-13 > test-basic-fits.R: outer mgc: 2.035696 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9298 mgc: 0.0105912 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.153956e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.153956e-13 > test-basic-fits.R: outer mgc: 0.3817989 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9429 mgc: 0.0002136745 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.571124e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.571124e-13 > test-basic-fits.R: outer mgc: 0.0486305 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.571124e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.571124e-13 > test-basic-fits.R: outer mgc: 0.0486305 > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 241.9429 mgc: 0.002536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.211278e-13 > test-basic-fits.R: outer mgc: 10.46405 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9429 mgc: 0.002536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.462522e-13 > test-basic-fits.R: outer mgc: 10.36678 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9452 mgc: 0.02536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.377878e-13 > test-basic-fits.R: outer mgc: 420.1751 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9452 mgc: 0.02536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.429015e-13 > test-basic-fits.R: outer mgc: 420.0778 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1861 mgc: 0.2536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.448532e-13 > test-basic-fits.R: outer mgc: 4715.599 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1861 mgc: 0.2536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.902304e-13 > test-basic-fits.R: outer mgc: 4715.502 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4448 mgc: 2.536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.208991e-13 > test-basic-fits.R: outer mgc: 47003.82 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4447 mgc: 2.536108 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.844573e-13 > test-basic-fits.R: outer mgc: 47003.72 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.664 mgc: 0.01575907 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.171202e-13 > test-basic-fits.R: outer mgc: 0.3928144 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2211 mgc: 0.01580792 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.411577e-13 > test-basic-fits.R: outer mgc: 0.4916178 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1418 mgc: 0.0152834 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.504644e-13 > test-basic-fits.R: outer mgc: 0.6368832 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7444 mgc: 0.01531399 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.090135e-13 > test-basic-fits.R: outer mgc: 0.6368188 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.577 mgc: 0.007910128 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.430502e-13 > test-basic-fits.R: outer mgc: 0.502248 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3086 mgc: 0.007885347 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.419866e-13 > test-basic-fits.R: outer mgc: 0.403083 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001740186 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.429006e-13 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.428131e-13 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.277751e-13 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9473 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.135642e-13 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9473 mgc: 0.02536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.349294e-13 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1882 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.292963e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1882 mgc: 0.2536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.589409e-13 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4469 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.078922e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 265.4469 mgc: 2.536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.605952e-13 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6661 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.22754e-13 > test-basic-fits.R: outer mgc: 0.4413401 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2232 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.487302e-13 > test-basic-fits.R: outer mgc: 0.4428826 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.144 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.493333e-13 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7465 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.414441e-13 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5791 mgc: 0.007910209 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.173456e-13 > test-basic-fits.R: outer mgc: 0.4535092 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3107 mgc: 0.007885428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.506788e-13 > test-basic-fits.R: outer mgc: 0.4516051 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.429006e-13 > test-basic-fits.R: outer mgc: 1.71683e-07 > test-dsem.R: Read 1 record > test-dsem.R: List of estimated fixed and random effects: > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 lnsigma_j 2 Fixed > test-dsem.R: 3 mu_j 2 Fixed > test-dsem.R: 4 x_tj 200 Random > test-dsem.R: Read 1 record > test-dsem.R: List of estimated fixed and random effects: > test-dsem.R: Running nlminb_loop #1 > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 mu_j 2 Fixed > test-dsem.R: 3 x_tj 200 Random > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-dsem.R: Running newton_loop #1 > test-basic-fits.R: Running nlminb_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 229.1158 mgc: 18.36883 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.606493e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.606493e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 97.84338 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 746.9223 mgc: 4.372699 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.403868e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 303.4515 mgc: 1.840867 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.269224e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.269224e-13 > test-basic-fits.R: outer mgc: 28.4921 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 283.6142 mgc: 1.457098 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.583825e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 6.583825e-14 > test-basic-fits.R: outer mgc: 7.706275 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 273.6771 mgc: 1.301377 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.019901e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.019901e-13 > test-basic-fits.R: outer mgc: 29.45454 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 236.784 mgc: 4.482705 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.792118e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.792118e-13 > test-basic-fits.R: outer mgc: 37.26213 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 393.6575 mgc: 1.767149 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.186561e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.186561e-13 > test-basic-fits.R: outer mgc: 7.508522 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 297.6905 mgc: 1.216087 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.069639e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 240.4895 mgc: 2.427044 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.126734e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: -108.7915 mgc: 17.85832 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.933182e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.126734e-13 > test-basic-fits.R: outer mgc: 19.58191 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 266.2703 mgc: 0.890106 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.040077e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.040077e-13 > test-basic-fits.R: outer mgc: 58.0566 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 208.2676 mgc: 0.7353453 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.026995e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 144.1115 mgc: 1.001105 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.268873e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: -129.2301 mgc: 6.976279 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.185866e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.185866e-13 > test-basic-fits.R: outer mgc: 91.59869 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 154.0025 mgc: 12.21326 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.077638e-12 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 165.0662 mgc: 4.408505 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.313627e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.313627e-13 > test-basic-fits.R: outer mgc: 20.27372 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 473.9895 mgc: 2.630469 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.160726e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 320.4547 mgc: 2.255113 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.197574e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.197574e-13 > test-basic-fits.R: outer mgc: 16.89141 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 302.598 mgc: 0.4969599 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.383213e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 285.978 mgc: 0.4492008 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.250527e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 275.6004 mgc: 0.4918618 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.239812e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 297.9581 mgc: 0.215684 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.482322e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.482322e-13 > test-basic-fits.R: outer mgc: 12.75396 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 298.3728 mgc: 0.1824974 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.605319e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 8.605319e-14 > test-basic-fits.R: outer mgc: 3.409208 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 272.9347 mgc: 0.2590749 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.771521e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 272.8012 mgc: 0.1939828 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.485846e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 271.3822 mgc: 0.7036672 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.332987e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 250.1867 mgc: 1.317023 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.188031e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.188031e-14 > test-basic-fits.R: outer mgc: 5.728465 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 209.5685 mgc: 4.951331 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.778486e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9151 mgc: 1.742013 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.165181e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.165181e-13 > test-basic-fits.R: outer mgc: 2.804808 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.0833 mgc: 0.1676763 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.406934e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.406934e-13 > test-basic-fits.R: outer mgc: 0.42684 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5044 mgc: 0.06954351 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.428838e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.428838e-13 > test-basic-fits.R: outer mgc: 0.1945696 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.8655 mgc: 0.01121674 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.191714e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.191714e-13 > test-basic-fits.R: outer mgc: 0.04075801 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9365 mgc: 0.002290194 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.269178e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.269178e-13 > test-basic-fits.R: outer mgc: 0.0009978472 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001195889 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.126496e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.126496e-13 > test-basic-fits.R: outer mgc: 0.0004645492 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.126496e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.126496e-13 > test-basic-fits.R: outer mgc: 0.0004645492 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.002536142 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.311258e-13 > test-basic-fits.R: outer mgc: 0.0341771 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.002536142 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.037107e-13 > test-basic-fits.R: outer mgc: 0.03437029 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001581466 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.155163e-13 > test-basic-fits.R: outer mgc: 0.0006590742 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001581466 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.315566e-13 > test-basic-fits.R: outer mgc: 0.0006179625 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001633032 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.828157e-13 > test-basic-fits.R: outer mgc: 0.0006491151 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001633032 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.164941e-13 > test-basic-fits.R: outer mgc: 0.000701333 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001434933 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.041109e-13 > test-basic-fits.R: outer mgc: 0.0007243787 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001434933 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.338324e-13 > test-basic-fits.R: outer mgc: 0.0006495642 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6646 mgc: 0.01575908 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.265539e-13 > test-basic-fits.R: outer mgc: 0.2219104 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2218 mgc: 0.01580793 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.411573e-13 > test-basic-fits.R: outer mgc: 0.2232314 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1425 mgc: 0.01528348 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.135644e-13 > test-basic-fits.R: outer mgc: 0.6363021 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7451 mgc: 0.01531408 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.966998e-14 > test-basic-fits.R: outer mgc: 0.6373881 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5776 mgc: 0.007910228 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.285756e-13 > test-basic-fits.R: outer mgc: 0.1348306 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3092 mgc: 0.007885447 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.646744e-13 > test-basic-fits.R: outer mgc: 0.1358944 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 2.919461e-05 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.24067e-13 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.028e-13 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.752399e-14 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001581462 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.826665e-13 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001581462 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.384365e-13 > test-basic-fits.R: outer mgc: 0.0006385176 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001633028 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.325938e-13 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001633028 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.198213e-13 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001434929 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.822858e-13 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001434929 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.72237e-13 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6661 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.514228e-13 > test-basic-fits.R: outer mgc: 0.222374 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2232 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.334001e-13 > test-basic-fits.R: outer mgc: 0.2227659 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.144 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.204804e-13 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7465 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.735826e-13 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5791 mgc: 0.007910209 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.380422e-13 > test-basic-fits.R: outer mgc: 0.1352949 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3107 mgc: 0.007885428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.351622e-13 > test-basic-fits.R: outer mgc: 0.1354297 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.24067e-13 > test-basic-fits.R: outer mgc: 2.422314e-09 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running nlminb_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 229.1158 mgc: 18.36883 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.606493e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.606493e-13 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 97.84338 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 746.9223 mgc: 4.372699 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 3.403868e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 303.4515 mgc: 1.840867 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.269224e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.269224e-13 > test-basic-fits.R: outer mgc: 28.4921 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 283.6142 mgc: 1.457098 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 6.583825e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 6.583825e-14 > test-basic-fits.R: outer mgc: 7.706275 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 273.6771 mgc: 1.301377 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.019901e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.019901e-13 > test-basic-fits.R: outer mgc: 29.45454 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 236.784 mgc: 4.482705 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.792118e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.792118e-13 > test-basic-fits.R: outer mgc: 37.26213 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 393.6575 mgc: 1.767149 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.186561e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.186561e-13 > test-basic-fits.R: outer mgc: 7.508522 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 297.6905 mgc: 1.216087 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.069639e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 240.4895 mgc: 2.427044 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.126734e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: -108.7915 mgc: 17.85832 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.933182e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.126734e-13 > test-basic-fits.R: outer mgc: 19.58191 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 266.2703 mgc: 0.890106 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.040077e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.040077e-13 > test-basic-fits.R: outer mgc: 58.0566 > test-basic-fits.R: iter: 1 > test-basic-fits.R: > test-basic-fits.R: value: 208.2676 mgc: 0.7353453 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.026995e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 144.1115 mgc: 1.001105 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.268873e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: -129.2301 mgc: 6.976279 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.185866e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.185866e-13 > test-basic-fits.R: outer mgc: 91.59869 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 154.0025 mgc: 12.21326 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 4.077638e-12 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 165.0662 mgc: 4.408505 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.313627e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 2.313627e-13 > test-basic-fits.R: outer mgc: 20.27372 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 473.9895 mgc: 2.630469 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.160726e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 320.4547 mgc: 2.255113 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.197574e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.197574e-13 > test-basic-fits.R: outer mgc: 16.89141 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 302.598 mgc: 0.4969599 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.383213e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 285.978 mgc: 0.4492008 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.250527e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 275.6004 mgc: 0.4918618 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.239812e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 297.9581 mgc: 0.215684 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.482322e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.482322e-13 > test-basic-fits.R: outer mgc: 12.75396 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 298.3728 mgc: 0.1824974 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 8.605319e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 8.605319e-14 > test-basic-fits.R: outer mgc: 3.409208 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 272.9347 mgc: 0.2590749 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.771521e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 272.8012 mgc: 0.1939828 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.485846e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 271.3822 mgc: 0.7036672 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.332987e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 250.1867 mgc: 1.317023 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.188031e-14 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 9.188031e-14 > test-basic-fits.R: outer mgc: 5.728465 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 209.5685 mgc: 4.951331 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.778486e-13 > test-basic-fits.R: iter: 1 value: 241.9151 mgc: 1.742013 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.165181e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.165181e-13 > test-basic-fits.R: outer mgc: 2.804808 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.0833 mgc: 0.1676763 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.406934e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.406934e-13 > test-basic-fits.R: outer mgc: 0.42684 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5044 mgc: 0.06954351 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.428838e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.428838e-13 > test-basic-fits.R: outer mgc: 0.1945696 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.8655 mgc: 0.01121674 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.191714e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.191714e-13 > test-basic-fits.R: outer mgc: 0.04075801 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9365 mgc: 0.002290194 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.269178e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.269178e-13 > test-basic-fits.R: outer mgc: 0.0009978472 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001195889 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.126496e-13 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.126496e-13 > test-basic-fits.R: outer mgc: 0.0004645492 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.126496e-13 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.126496e-13 > test-basic-fits.R: outer mgc: 0.0004645492 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.002536142 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.311258e-13 > test-basic-fits.R: outer mgc: 0.0341771 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.002536142 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.037107e-13 > test-basic-fits.R: outer mgc: 0.03437029 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001581466 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.155163e-13 > test-basic-fits.R: outer mgc: 0.0006590742 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001581466 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.315566e-13 > test-basic-fits.R: outer mgc: 0.0006179625 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001633032 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.828157e-13 > test-basic-fits.R: outer mgc: 0.0006491151 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001633032 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.164941e-13 > test-basic-fits.R: outer mgc: 0.000701333 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001434933 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.041109e-13 > test-basic-fits.R: outer mgc: 0.0007243787 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9436 mgc: 0.0001434933 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.338324e-13 > test-basic-fits.R: outer mgc: 0.0006495642 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6646 mgc: 0.01575908 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.265539e-13 > test-basic-fits.R: outer mgc: 0.2219104 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2218 mgc: 0.01580793 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.411573e-13 > test-basic-fits.R: outer mgc: 0.2232314 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.1425 mgc: 0.01528348 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.135644e-13 > test-basic-fits.R: outer mgc: 0.6363021 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7451 mgc: 0.01531408 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.966998e-14 > test-basic-fits.R: outer mgc: 0.6373881 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5776 mgc: 0.007910228 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.285756e-13 > test-basic-fits.R: outer mgc: 0.1348306 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3092 mgc: 0.007885447 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.646744e-13 > test-basic-fits.R: outer mgc: 0.1358944 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 2.919461e-05 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.24067e-13 > test-basic-fits.R: Running sdreport > test-basic-fits.R: iter: > test-basic-fits.R: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.028e-13 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.9451 mgc: 0.002536135 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 9.752399e-14 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001581462 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.826665e-13 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001581462 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.384365e-13 > test-basic-fits.R: outer mgc: 0.0006385176 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001633028 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.325938e-13 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001633028 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.198213e-13 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001434929 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.822858e-13 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.945 mgc: 0.0001434929 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.72237e-13 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.6661 mgc: 0.01575904 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.514228e-13 > test-basic-fits.R: outer mgc: 0.222374 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.2232 mgc: 0.01580789 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.334001e-13 > test-basic-fits.R: outer mgc: 0.2227659 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.144 mgc: 0.01528346 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 2.204804e-13 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.7465 mgc: 0.01531405 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.735826e-13 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 241.5791 mgc: 0.007910209 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.380422e-13 > test-basic-fits.R: outer mgc: 0.1352949 > test-basic-fits.R: iter: 1 > test-basic-fits.R: value: 242.3107 mgc: 0.007885428 ustep: 1 > test-basic-fits.R: iter: 2 > test-basic-fits.R: mgc: 1.351622e-13 > test-basic-fits.R: outer mgc: 0.1354297 > test-basic-fits.R: iter: 1 > test-basic-fits.R: mgc: 1.24067e-13 > test-basic-fits.R: outer mgc: 2.422314e-09 > test-mesh.R: Linking to GEOS 3.13.1, GDAL 3.11.4, PROJ 9.7.0; sf_use_s2() is TRUE > test-platform.R: Call: > test-platform.R: tinyVAST(formula = n ~ s(w), data = Data, space_term = "", spatial_domain = mesh, > test-platform.R: control = tinyVASTcontrol(getJointPrecision = TRUE)) > test-platform.R: > test-platform.R: Run time: > test-platform.R: Time difference of 1.354788 secs > test-platform.R: > test-platform.R: Family: > test-platform.R: $obs > test-platform.R: > test-platform.R: Family: gaussian > test-platform.R: Link function: identity > test-platform.R: > test-platform.R: > test-platform.R: > test-platform.R: > test-platform.R: sdreport(.) result > test-platform.R: Estimate Std. Error > test-platform.R: alpha_j 0.0009397426 0.1178306 > test-platform.R: theta_z 1.0062955339 0.1055917 > test-platform.R: log_lambda > test-platform.R: -2.4632302941 0.6906819 > test-platform.R: log_sigma -0.2433071739 0.1604644 > test-platform.R: log_kappa 0.1683186512 0.2109440 > test-platform.R: Maximum gradient component: 5.21377e-06 > test-platform.R: > test-platform.R: Proportion conditional deviance explained: > test-platform.R: [1] 0.8706386 > test-platform.R: > test-platform.R: space_term: > test-platform.R: heads to from parameter start Estimate Std_Error z_value p_value > test-platform.R: 1 2 n n 1 1.006296 0.1055917 9.530064 1.571858e-21 > test-platform.R: > test-platform.R: Fixed terms: > test-platform.R: Estimate Std_Error z_value p_value > test-platform.R: (Intercept) 0.0009397426 0.1178306 0.007975371 0.9936366 > test-platform.R: > test-index-standardization.R: Loading required package: VAST > test-sfnetworks.R: Linking to GEOS 3.13.1, GDAL 3.11.4, PROJ 9.7.0; sf_use_s2() is TRUE > test-smooths.R: Gu & Wahba 4 term additive model > test-smooths.R: Gu & Wahba 4 term additive model > test-smooths.R: Gu & Wahba 4 term additive model [ FAIL 0 | WARN 5 | SKIP 20 | PASS 118 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-deviance-residuals.R:3:3', 'test-deviance-residuals.R:37:3', 'test-deviance-residuals.R:116:3', 'test-deviance-residuals.R:151:3', 'test-deviance-residuals.R:189:3', 'test-deviance-residuals.R:228:3', 'test-deviance-residuals.R:255:3', 'test-deviance-residuals.R:313:3', 'test-deviance-residuals.R:352:3', 'test-basic-fits.R:41:3', 'test-smooths.R:2:3', 'test-smooths.R:143:3', 'test-smooths.R:159:3', 'test-smooths.R:169:3', 'test-smooths.R:186:3', 'test-smooths.R:206:3', 'test-smooths.R:223:3', 'test-smooths.R:240:3', 'test-smooths.R:260:3' • require(VAST) is not TRUE (1): 'test-index-standardization.R:77:3' [ FAIL 0 | WARN 5 | SKIP 20 | PASS 118 ] > > # Run from local directory > # testthat::test_dir( "C:/Users/James.Thorson/Desktop/Git/tinyVAST/tests/testthat/", reporter="check" ) > # testthat::test_local(path = "C:/Users/James.Thorson/Desktop/Git/tinyVAST" ) > > proc.time() user system elapsed 5.78 0.67 33.07