* using log directory ‘/srv/hornik/tmp/CRAN/timeordered.Rcheck’
* using R Under development (unstable) (2023-08-18 r84986)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (10)
    GNU Fortran (Debian 13.2.0-1) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘timeordered/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘timeordered’ version ‘1.0.0’
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Benjamin Blonder <benjamin.blonder@berkeley.edu>’

New maintainer:
  Benjamin Blonder <benjamin.blonder@berkeley.edu>
Old maintainer(s):
  Benjamin Blonder <bblonder@gmail.com>

File 'R/timeordered-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘timeordered’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Variables with usage in documentation object ‘ants’ but not in code:
  ‘ants’

* checking Rd \usage sections ... OK
* checking Rd contents ... NOTE
Auto-generated content requiring editing in Rd object ‘applynetworkfunction’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘generatelatencies’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘generatenetworkslices’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘generatetimeaggregatednetwork’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘generatetimedeltas’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘generatetimelags’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘generatetonetwork’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Argument items with no description in Rd object ‘generatetonetworkfromvel’:
  ‘vel’
Auto-generated content requiring editing in Rd object ‘generatetonetworkfromvel’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Argument items with no description in Rd object ‘generatevertexedgelist’:
  ‘raw’ ‘allindivs’
Auto-generated content requiring editing in Rd object ‘generatevertexedgelist’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘maxpoints’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘midpoints’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘plotnetworkslices’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘plottanet’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘plottonet’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Argument items with no description in Rd object ‘randomize_edges_helper’:
  ‘edges’ ‘randomize_vertices’
Auto-generated content requiring editing in Rd object ‘randomize_edges_helper’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘randomizeidentities’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘randomizetimes’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘randomly_permuted_times’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘rarefy’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘shortesthoppath’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘shortesttimepath’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘spreadanalysis’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Argument items with no description in Rd object ‘swap’:
  ‘df’ ‘r1’ ‘c1’ ‘r2’ ‘c2’
Auto-generated content requiring editing in Rd object ‘swap’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
Auto-generated content requiring editing in Rd object ‘transformspreadbyindividual’:
  \keyword{~kwd1}: ‘~kwd1’
  \keyword{~kwd2}: ‘~kwd2’
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [7s/7s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs