downloading reverse dependencies ... downloading bartMan_0.1.1.tar.gz ... ok installing dependencies ‘bartCause’, ‘DendSer’, ‘lvplot’, ‘stan4bart’, ‘tidytreatment’ begin installing package ‘stan4bart’ begin installing package ‘DendSer’ begin installing package ‘bartCause’ begin installing package ‘tidytreatment’ begin installing package ‘lvplot’ * installing *source* package ‘DendSer’ ... ** this is package ‘DendSer’ version ‘1.0.2’ ** package ‘DendSer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-12) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0OVszQ/R.INSTALL1cb6e83d4de85c/DendSer/src' gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DendSer_init.c -o DendSer_init.o gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c carct.c -o carct.o gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cbar.c -o cbar.o gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clpl.c -o clpl.o gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cpl.c -o cpl.o gcc-14 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o DendSer.so DendSer_init.o carct.o cbar.o clpl.o cpl.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0OVszQ/R.INSTALL1cb6e83d4de85c/DendSer/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-DendSer/00new/DendSer/libs ** R ** demo ** byte-compile and prepare package for lazy loading Warning in seriation::set_criterion_method("dist", "BAR", criterion_method_dist_BAR, : Entry with name ‘BAR’ already exists! Modifying entry. ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DendSer) * installing *source* package ‘bartCause’ ... ** this is package ‘bartCause’ version ‘1.0-9’ ** package ‘bartCause’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bartCause) * installing *source* package ‘tidytreatment’ ... ** this is package ‘tidytreatment’ version ‘0.3.1’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidytreatment) * installing *source* package ‘lvplot’ ... ** this is package ‘lvplot’ version ‘0.2.1’ ** package ‘lvplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lvplot) * installing *source* package ‘stan4bart’ ... ** this is package ‘stan4bart’ version ‘0.0-10’ ** package ‘stan4bart’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-14 -std=gnu++17 accepts -g... yes checking for g++-14 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-14 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether g++-14 -std=gnu++17 accepts -g... (cached) yes checking for g++-14 -std=gnu++17 option to enable C++11 features... (cached) none needed checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc-14 checking whether the compiler supports GNU C... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to enable C11 features... none needed checking for x86 cpuid output... unknown checking for x86-AVX xgetbv output... unknown checking for x86 cpuid 0x00000000 output... 14:756e6547:6c65746e:49656e69 checking for x86 cpuid 0x00000001 output... 406f1:38200800:7ffefbff:bfebfbff checking whether SSE2 is supported by the processor... yes checking whether SSE2 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse2... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking size of size_t... 8 checking alignment of void*... 8 checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for working posix_memalign... yes checking for ffs... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-12) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpysjNd1/R.INSTALL1cb6e5191332a1/stan4bart/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c bart_util.cpp -o bart_util.o In file included from bart_util.hpp:4, from bart_util.cpp:1: include/ext/Rinternals.h:30:9: warning: "R_NO_REMAP" redefined 30 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c init.cpp -o init.o In file included from init.cpp:1: include/ext/Rinternals.h:30:9: warning: "R_NO_REMAP" redefined 30 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition In file included from stan_sampler_includes.hpp:78, from stan_sampler.hpp:15, from init.cpp:30: include/stan/io/dump.hpp: In member function ‘bool stan::io::dump_reader::scan_single_char(char)’: include/stan/io/dump.hpp:122: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 122 | if (in_.fail()) include/stan/io/dump.hpp:122: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc_adaptiveRadixTree.c -o misc_adaptiveRadixTree.o gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc_string.c -o misc_string.o gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rc_bounds.c -o rc_bounds.o gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rc_util.c -o rc_util.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c stan_sampler.cpp -o stan_sampler.o In file included from stan_sampler.hpp:4, from stan_sampler.cpp:1: include/ext/Rinternals.h:30:9: warning: "R_NO_REMAP" redefined 30 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition In file included from stan_sampler_includes.hpp:78, from stan_sampler.hpp:15: include/stan/io/dump.hpp: In member function ‘void stan::io::dump_reader::scan_number(bool)’: include/stan/io/dump.hpp:326: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 326 | for (size_t j = 0; j < stack_i_.size(); ++j) include/stan/io/dump.hpp:326: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory In file included from include/stan/model/model_header.hpp:15, from stan_files/continuous.hpp:43, from stan_sampler.cpp:16: include/stan/model/model_base_crtp.hpp: At global scope: include/stan/model/model_base_crtp.hpp:149: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(std::vector, std::allocator > >&, std::vector&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 149 | inline math::var log_prob(std::vector& theta, stan_files/continuous.hpp:3389: note: by ‘continuous_model_namespace::continuous_model::log_prob’ 3389 | inline T__ log_prob(std::vector& params_r, include/stan/model/model_base_crtp.hpp:144: warning: ‘double stan::model::model_base_crtp::log_prob(std::vector&, std::vector&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 144 | inline double log_prob(std::vector& theta, std::vector& theta_i, stan_files/continuous.hpp:3389: note: by ‘continuous_model_namespace::continuous_model::log_prob’ 3389 | inline T__ log_prob(std::vector& params_r, include/stan/model/model_base_crtp.hpp:93: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(Eigen::Matrix, -1, 1>&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 93 | inline math::var log_prob(Eigen::Matrix& theta, stan_files/continuous.hpp:3389: note: by ‘continuous_model_namespace::continuous_model::log_prob’ 3389 | inline T__ log_prob(std::vector& params_r, include/stan/model/model_base_crtp.hpp:88: warning: ‘double stan::model::model_base_crtp::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 88 | inline double log_prob(Eigen::VectorXd& theta, stan_files/continuous.hpp:3389: note: by ‘continuous_model_namespace::continuous_model::log_prob’ 3389 | inline T__ log_prob(std::vector& params_r, g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o stan4bart.so bart_util.o init.o misc_adaptiveRadixTree.o misc_string.o rc_bounds.o rc_util.o stan_sampler.o -L/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpysjNd1/R.INSTALL1cb6e5191332a1/stan4bart/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stan4bart/00new/stan4bart/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stan4bart) checking tidytreatment_0.3.1.tar.gz ... checking bartMan_0.1.1.tar.gz ... Depends: Package: tidytreatment Depends: R (>= 3.1.0) Imports: tidybayes, purrr, tidyr, dplyr, readr, rlang, dbarts, BART, coda, magrittr Timings: user system elapsed tidytreatment 119.886 7.385 129.684 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: tidytreatment ... OK rdepends_bartMan ... OK