* using log directory 'd:/RCompile/CRANincoming/R-devel/tidystats.Rcheck'
* using R Under development (unstable) (2023-10-11 r85316 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'tidystats/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'tidystats' version '0.6.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Willem Sleegers <w.sleegers@me.com>'

New submission

Package was archived on CRAN

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-09-26 as check issues were not
    corrected in time.

Size of tarball: 17831124 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tidystats' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
tidy_stats:
  function(x, args)
tidy_stats.psych.ICC:
  function(x)

tidy_stats:
  function(x, args)
tidy_stats.psych.mardia:
  function(x)

tidy_stats:
  function(x, args)
tidy_stats.psych.alpha:
  function(x)

tidy_stats:
  function(x, args)
tidy_stats.psych.corr.test:
  function(x)

Apparent methods for exported generics not registered:
  tidy_stats.BFBayesFactor tidy_stats.afex_aov tidy_stats.anova
  tidy_stats.anova.lme tidy_stats.aov tidy_stats.aovlist
  tidy_stats.brmsfit tidy_stats.confint
  tidy_stats.effectsize_difference tidy_stats.effsize
  tidy_stats.emmGrid tidy_stats.emm_list tidy_stats.glm tidy_stats.gls
  tidy_stats.htest tidy_stats.icclist tidy_stats.lavaan tidy_stats.lm
  tidy_stats.lme tidy_stats.lmerMod tidy_stats.nlme
  tidy_stats.pairwise.htest tidy_stats.psych tidy_stats.psych.ICC
  tidy_stats.psych.alpha tidy_stats.psych.corr.test
  tidy_stats.psych.mardia tidy_stats.rcorr tidy_stats.summary_emm
  tidy_stats.tidystats tidy_stats.tidystats_counts
  tidy_stats.tidystats_descriptives
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'tidystats-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_stats
> ### Title: Add statistical output to a tidystats list
> ### Aliases: add_stats
> 
> ### ** Examples
> 
> # Conduct analyses
> sleep_test <- t.test(extra ~ group, data = sleep, paired = TRUE)
Error in t.test.formula(extra ~ group, data = sleep, paired = TRUE) : 
  cannot use 'paired' in formula method
Calls: t.test -> t.test.formula
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [12s] ERROR
  Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tidystats)
  This version of tidystats uses a new and improved way of structuring statistics. This breaks previous versions of tidystats. Updates to other tidystats-related software are coming soon.
  > 
  > test_check("tidystats")
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 175 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_glm.R:118:3'): glm anova works ───────────────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Component "groups": Component 1: Component 2: Component 2: Component 2: Length mismatch: comparison on first 4 components
  Component "groups": Component 1: Component 2: Component 3: Component 2: Length mismatch: comparison on first 4 components
  Backtrace:
      ▆
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$anova_glm) at test_glm.R:118:2
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Error ('test_htest.R:35:3'): paired t-test works ────────────────────────────
  Error in `t.test.formula(extra ~ group, data = sleep, paired = TRUE)`: cannot use 'paired' in formula method
  Backtrace:
      ▆
   1. ├─stats::t.test(extra ~ group, data = sleep, paired = TRUE) at test_htest.R:35:2
   2. └─stats:::t.test.formula(extra ~ group, data = sleep, paired = TRUE)
  ── Error ('test_main.R:10:3'): the t-test in main works ────────────────────────
  Error in `t.test.formula(extra ~ group, data = sleep, paired = TRUE)`: cannot use 'paired' in formula method
  Backtrace:
      ▆
   1. ├─stats::t.test(extra ~ group, data = sleep, paired = TRUE) at test_main.R:10:2
   2. └─stats:::t.test.formula(extra ~ group, data = sleep, paired = TRUE)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 175 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 2 NOTEs