* installing *source* package ‘tidysq’ ...
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
using C++17
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from RcppExports.cpp:4:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c apply_R_function.cpp -o apply_R_function.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from apply_R_function.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ProtoSq.h:5:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Rcpp::Vector<19>; ELEMENT_OUT = SEXPREC*]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Rcpp::Vector<19>; ELEMENT_OUT = SEXPREC*]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/apply_R_function.h:51:23:   required from ‘Rcpp::List tidysq::apply_R_function(const Sq<INTERNAL_IN>&, const Rcpp::Function&) [with INTERNAL_IN = RCPP_IT; PROTO_TMP = STRING_PT; Rcpp::List = Rcpp::Vector<19>; Rcpp::Function = Rcpp::Function_Impl<Rcpp::PreserveStorage>]’
   51 |         return sqapply(sq, ops::OperationApplyRFunction<INTERNAL_IN, PROTO_TMP>(sq.alphabet(), function));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
apply_R_function.cpp:12:52:   required from here
   12 |         return apply_R_function<RCPP_IT, STRING_PT>(import_sq_from_R(x, NA_letter), fun);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c bite.cpp -o bite.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from bite.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ops/bite.h:5,
                 from bite.cpp:1:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’:
../inst/include/tidysq/ops/bite.h:71:27:   required from ‘tidysq::util::ResultWrapper<tidysq::Sq<INTERNAL_OUT> > tidysq::bite(const Sq<INTERNAL_IN>&, const std::vector<long int>&) [with INTERNAL_IN = RCPP_IT; INTERNAL_OUT = RCPP_IT]’
   71 |         auto ret = sqapply(sq, op);
      |                    ~~~~~~~^~~~~~~~
bite.cpp:17:30:   required from here
   17 |                 bite<RCPP_IT>(import_sq_from_R(x, NA_letter), Rcpp::as<std::vector<LenSq>>(cpp_indices));
      |                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c collapse.cpp -o collapse.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from collapse.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c complement.cpp -o complement.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from complement.cpp:4:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ops/complement.h:4,
                 from complement.cpp:3:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/complement.h:79:23:   required from ‘tidysq::Sq<INTERNAL_OUT> tidysq::complement(const Sq<INTERNAL_IN>&) [with INTERNAL_IN = RCPP_IT; INTERNAL_OUT = RCPP_IT]’
   79 |         return sqapply(sq, ops::OperationComplement<INTERNAL_IN, INTERNAL_OUT>(sq.alphabet().alphabet_size(), sq.type()));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
complement.cpp:12:43:   required from here
   12 |     return export_to_R(complement<RCPP_IT>(import_sq_from_R(x, NA_letter)));
      |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c find_invalid_letters.cpp -o find_invalid_letters.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from find_invalid_letters.cpp:2:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ops/find_invalid_letters.h:4,
                 from find_invalid_letters.cpp:1:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = std::vector<std::vector<std::__cxx11::basic_string<char> > >; ELEMENT_OUT = std::vector<std::__cxx11::basic_string<char> >]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = std::vector<std::vector<std::__cxx11::basic_string<char> > >; ELEMENT_OUT = std::vector<std::__cxx11::basic_string<char> >]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/find_invalid_letters.h:72:23:   required from ‘std::vector<std::vector<std::__cxx11::basic_string<char> > > tidysq::find_invalid_letters(const Sq<INTERNAL_IN>&, const SqType&) [with INTERNAL_IN = RCPP_IT]’
   72 |         return sqapply(sq, ops::OperationFindInvalidLetters<INTERNAL_IN>(sq.alphabet(), dest_type));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
find_invalid_letters.cpp:11:43:   required from here
   11 |     return Rcpp::wrap(find_invalid_letters(import_sq_from_R(x, NA_letter),
      |                       ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   12 |                                            util::sq_type_for_sq_type_abbr(dest_type)));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c find_motifs.cpp -o find_motifs.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from find_motifs.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c get_standard_alphabet.cpp -o get_standard_alphabet.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from get_standard_alphabet.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c guess_standard_alph.cpp -o guess_standard_alph.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from guess_standard_alph.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c has.cpp -o has.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from has.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ProtoSq.h:5:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = std::vector<bool>; ELEMENT_OUT = bool]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = std::vector<bool>; ELEMENT_OUT = bool]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/has.h:49:23:   required from ‘std::vector<bool> tidysq::has(const Sq<INTERNAL_IN>&, const std::vector<std::__cxx11::basic_string<char> >&) [with INTERNAL_IN = RCPP_IT]’
   49 |         return sqapply(sq, ops::OperationHas<INTERNAL_IN>(sq.alphabet(), motifs));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
has.cpp:11:34:   required from here
   11 |    return Rcpp::wrap(has<RCPP_IT>(import_sq_from_R(x, NA_letter), motifs));
      |                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c obtain_alphabet.cpp -o obtain_alphabet.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from obtain_alphabet.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c pack.cpp -o pack.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from pack.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c paste.cpp -o paste.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from paste.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c random_sq.cpp -o random_sq.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from random_sq.cpp:4:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c read_fasta.cpp -o read_fasta.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from read_fasta.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c remove_NA.cpp -o remove_NA.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from remove_NA.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ProtoSq.h:5:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/remove_NA.h:25:23:   required from ‘tidysq::Sq<INTERNAL_OUT> tidysq::remove_NA(const Sq<INTERNAL_IN>&, bool) [with INTERNAL_IN = RCPP_IT; INTERNAL_OUT = RCPP_IT]’
   25 |         return sqapply(sq, ops::OperationRemoveNA<INTERNAL_IN, INTERNAL_OUT>(sq.alphabet(), by_letter));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
remove_NA.cpp:13:42:   required from here
   13 |     return export_to_R(remove_NA<RCPP_IT>(import_sq_from_R(x, NA_letter), by_letter));
      |                        ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c remove_ambiguous.cpp -o remove_ambiguous.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from remove_ambiguous.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ProtoSq.h:5:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/remove_ambiguous.h:53:23:   required from ‘tidysq::Sq<INTERNAL_OUT> tidysq::remove_ambiguous(const Sq<INTERNAL_IN>&, bool) [with INTERNAL_IN = RCPP_IT; INTERNAL_OUT = RCPP_IT]’
   53 |         return sqapply(sq, ops::OperationRemoveAmbiguous<INTERNAL_IN, INTERNAL_OUT>(sq.alphabet(), by_letter));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
remove_ambiguous.cpp:13:49:   required from here
   13 |     return export_to_R(remove_ambiguous<RCPP_IT>(import_sq_from_R(x, NA_letter), by_letter));
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c reverse.cpp -o reverse.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from reverse.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ProtoSq.h:5:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/reverse.h:36:23:   required from ‘tidysq::Sq<INTERNAL_OUT> tidysq::reverse(const Sq<INTERNAL_IN>&) [with INTERNAL_IN = RCPP_IT; INTERNAL_OUT = RCPP_IT]’
   36 |         return sqapply(sq, ops::OperationReverse<INTERNAL_IN, INTERNAL_OUT>(sq.alphabet().alphabet_size()));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
reverse.cpp:10:40:   required from here
   10 |     return export_to_R(reverse<RCPP_IT>(import_sq_from_R(x, NA_letter)));
      |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c sqapply.cpp -o sqapply.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c substitute_letters.cpp -o substitute_letters.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from substitute_letters.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ProtoSq.h:5:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/substitute_letters.h:98:23:   required from ‘tidysq::Sq<INTERNAL_OUT> tidysq::substitute_letters(const Sq<INTERNAL_IN>&, const std::unordered_map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >&) [with INTERNAL_IN = RCPP_IT; INTERNAL_OUT = RCPP_IT]’
   98 |         return sqapply(sq, ops::OperationSubstituteLetters<INTERNAL_IN, INTERNAL_OUT>(sq.alphabet(), encoding));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
substitute_letters.cpp:19:51:   required from here
   19 |     return export_to_R(substitute_letters<RCPP_IT>(import_sq_from_R(x, NA_letter), encoding_map));
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c test-pack.cpp -o test-pack.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from test-pack.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
../inst/include/tidysq/ProtoSq.h: In instantiation of ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::RAWS_PT]’:
test-pack.cpp:11:5:   required from ‘void test_packing_and_unpacking(const tidysq::ProtoSq<INTERNAL_IN, PROTO_IN>&) [with INTERNAL_UNPACKED = tidysq::RCPP_IT; PROTO = tidysq::RAWS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]’
   11 |     expect_true(proto_sq == reunpacked);
test-pack.cpp:187:5:   required from here
  168 |     test_packing_and_unpacking<INTERNAL_UNPACKED##_IT, PROTO##_PT, INTERNAL_PACKED##_IT>(                              \
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  169 |         create_proto_sq_from_raws<INTERNAL_UNPACKED##_IT, PROTO##_PT>(alph_##ALPH_SIZE##_sequences,                    \
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  170 |         SIMPLE ? alph_##ALPH_SIZE##_simple : alph_##ALPH_SIZE##_multichar)                                             \
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  171 |     );                                                                                                                 \
      |     ~                                                                                    
../inst/include/tidysq/ProtoSq.h:68:34: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   68 |            for (u_LenSq i = 0; i < content_.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~
../inst/include/tidysq/ProtoSq.h: In instantiation of ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::INTS_PT]’:
test-pack.cpp:11:5:   required from ‘void test_packing_and_unpacking(const tidysq::ProtoSq<INTERNAL_IN, PROTO_IN>&) [with INTERNAL_UNPACKED = tidysq::RCPP_IT; PROTO = tidysq::INTS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]’
   11 |     expect_true(proto_sq == reunpacked);
test-pack.cpp:187:5:   required from here
  168 |     test_packing_and_unpacking<INTERNAL_UNPACKED##_IT, PROTO##_PT, INTERNAL_PACKED##_IT>(                              \
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  169 |         create_proto_sq_from_raws<INTERNAL_UNPACKED##_IT, PROTO##_PT>(alph_##ALPH_SIZE##_sequences,                    \
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  170 |         SIMPLE ? alph_##ALPH_SIZE##_simple : alph_##ALPH_SIZE##_multichar)                                             \
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  171 |     );                                                                                                                 \
      |     ~                                                                                    
../inst/include/tidysq/ProtoSq.h:68:34: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   68 |            for (u_LenSq i = 0; i < content_.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~
../inst/include/tidysq/ProtoSq.h: In instantiation of ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRINGS_PT]’:
test-pack.cpp:11:5:   required from ‘void test_packing_and_unpacking(const tidysq::ProtoSq<INTERNAL_IN, PROTO_IN>&) [with INTERNAL_UNPACKED = tidysq::RCPP_IT; PROTO = tidysq::STRINGS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]’
   11 |     expect_true(proto_sq == reunpacked);
test-pack.cpp:187:5:   required from here
  168 |     test_packing_and_unpacking<INTERNAL_UNPACKED##_IT, PROTO##_PT, INTERNAL_PACKED##_IT>(                              \
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  169 |         create_proto_sq_from_raws<INTERNAL_UNPACKED##_IT, PROTO##_PT>(alph_##ALPH_SIZE##_sequences,                    \
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  170 |         SIMPLE ? alph_##ALPH_SIZE##_simple : alph_##ALPH_SIZE##_multichar)                                             \
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  171 |     );                                                                                                                 \
      |     ~                                                                                    
../inst/include/tidysq/ProtoSq.h:68:34: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   68 |            for (u_LenSq i = 0; i < content_.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c translate.cpp -o translate.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from translate.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ProtoSq.h:5:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/translate.h:148:23:   required from ‘tidysq::Sq<INTERNAL_OUT> tidysq::translate(const Sq<INTERNAL_IN>&, const unsigned int&) [with INTERNAL_IN = RCPP_IT; INTERNAL_OUT = RCPP_IT]’
  148 |         return sqapply(sq, ops::OperationTranslate<INTERNAL_IN, INTERNAL_OUT>(table));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
translate.cpp:11:42:   required from here
   11 |     return export_to_R(translate<RCPP_IT>(
      |                        ~~~~~~~~~~~~~~~~~~^
   12 |             import_sq_from_R(x, NA_letter),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   13 |             table));
      |             ~~~~~~                        
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c typify.cpp -o typify.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq/Rcpp-import.h:3,
                 from typify.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from ../inst/include/tidysq/ProtoSq.h:5:
../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’:
../inst/include/tidysq/sqapply.h:23:71:   required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>&&) [with VECTOR_IN = Sq<RCPP_IT>; ELEMENT_IN = Sequence<RCPP_IT>; VECTOR_OUT = Sq<RCPP_IT>; ELEMENT_OUT = Sequence<RCPP_IT>]’
   23 |         return sqapply<VECTOR_IN, ELEMENT_IN, VECTOR_OUT, ELEMENT_OUT>(vector_in, operation);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/ops/typify.h:62:23:   required from ‘tidysq::Sq<INTERNAL_OUT> tidysq::typify(const Sq<INTERNAL_IN>&, const SqType&) [with INTERNAL_IN = RCPP_IT; INTERNAL_OUT = RCPP_IT]’
   62 |         return sqapply(sq, ops::OperationTypify<INTERNAL_IN, INTERNAL_OUT>(sq.alphabet(), dest_type));
      |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
typify.cpp:13:39:   required from here
   13 |     return export_to_R(typify<RCPP_IT>(import_sq_from_R(x, NA_letter),
      |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   14 |                                        util::sq_type_for_sq_type_abbr(dest_type)));
      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/tidysq/sqapply.h:13:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘tidysq::LenSq’ {aka ‘long int’} [-Wsign-compare]
   13 |         for (u_LenSq i = 0; i < vector_in.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c unpack.cpp -o unpack.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from unpack.cpp:3:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c write_fasta.cpp -o write_fasta.o
In file included from ../inst/include/tidysq/ops/unpack.h:6,
                 from ../inst/include/tidysq/Sq.h:5,
                 from ../inst/include/tidysq.h:5,
                 from write_fasta.cpp:1:
../inst/include/tidysq/ProtoSq.h: In member function ‘bool tidysq::ProtoSq<INTERNAL, PROTO>::operator==(const tidysq::ProtoSq<INTERNAL, PROTO>&) const [with INTERNAL = tidysq::RCPP_IT; PROTO = tidysq::STRING_PT]’:
../inst/include/tidysq/ProtoSq.h:86:31: warning: comparison of integer expressions of different signedness: ‘tidysq::u_LenSq’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   86 |         for (u_LenSq i = 0; i < content_.size(); i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -g -O2 -Wall -pedantic -mtune=native -flto -fpic -L/home/hornik/tmp/R-d-gcc-LTO/lib -Wl,-O1 -o tidysq.so RcppExports.o apply_R_function.o bite.o collapse.o complement.o find_invalid_letters.o find_motifs.o get_standard_alphabet.o guess_standard_alph.o has.o obtain_alphabet.o pack.o paste.o random_sq.o read_fasta.o remove_NA.o remove_ambiguous.o reverse.o sqapply.o substitute_letters.o test-pack.o test-runner.o translate.o typify.o unpack.o write_fasta.o -L/home/hornik/tmp/R-d-gcc-LTO/lib -lR
lto-wrapper: warning: using serial compilation of 25 LTRANS jobs
lto-wrapper: note: see the ‘-flto’ option documentation for more information
test-pack.cpp: In function ‘____C_A_T_C_H____T_E_S_T____0’:
test-pack.cpp:95:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
   95 | context("test-pack") {
      | ^
installing to /home/hornik/tmp/CRAN_special_LTO/tidysq.Rcheck/00LOCK-tidysq/00new/tidysq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidysq)