* installing *source* package ‘tidysq’ ... ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++17 g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c apply_R_function.cpp -o apply_R_function.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c bite.cpp -o bite.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c collapse.cpp -o collapse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c complement.cpp -o complement.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c find_invalid_letters.cpp -o find_invalid_letters.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c find_motifs.cpp -o find_motifs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c get_standard_alphabet.cpp -o get_standard_alphabet.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c guess_standard_alph.cpp -o guess_standard_alph.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c has.cpp -o has.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c obtain_alphabet.cpp -o obtain_alphabet.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c pack.cpp -o pack.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c paste.cpp -o paste.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c random_sq.cpp -o random_sq.o In file included from ../inst/include/tidysq/ops/pack.h:5, from ../inst/include/tidysq/ops/random_sq.h:5, from random_sq.cpp:3: ../inst/include/tidysq/sqapply.h: In instantiation of ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector&) [with VECTOR_IN = std::vector; ELEMENT_IN = long int; VECTOR_OUT = Sq; ELEMENT_OUT = Sequence]’: ../inst/include/tidysq/sqapply.h:23:71: required from ‘VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector&&) [with VECTOR_IN = std::vector; ELEMENT_IN = long int; VECTOR_OUT = Sq; ELEMENT_OUT = Sequence]’ 23 | return sqapply(vector_in, operation); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../inst/include/tidysq/ops/random_sq.h:62:23: required from ‘tidysq::Sq tidysq::random_sq(const std::vector&, const Alphabet&, const bool&) [with INTERNAL = RCPP_IT]’ 62 | return sqapply(lengths, ops::OperationRandomSq(alphabet, use_gap)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ random_sq.cpp:22:42: required from here 22 | return export_to_R(random_sq( | ~~~~~~~~~~~~~~~~~~^ 23 | Rcpp::as>(len), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 24 | import_alphabet_from_R(alphabet), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 25 | use_gap)); | ~~~~~~~~ ../inst/include/tidysq/sqapply.h:13:29: warning: comparison of integer expressions of different signedness: ‘tidysq::LenSq’ {aka ‘long int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13 | for (LenSq i = 0; i < vector_in.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c read_fasta.cpp -o read_fasta.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c remove_NA.cpp -o remove_NA.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c remove_ambiguous.cpp -o remove_ambiguous.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c reverse.cpp -o reverse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c sqapply.cpp -o sqapply.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c substitute_letters.cpp -o substitute_letters.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c test-pack.cpp -o test-pack.o In file included from ../inst/include/tidysq/ops/unpack.h:6, from ../inst/include/tidysq/Sq.h:5, from ../inst/include/tidysq.h:5, from test-pack.cpp:3: ../inst/include/tidysq/ProtoSq.h: In instantiation of ‘bool tidysq::ProtoSq::operator==(const tidysq::ProtoSq&) const [with INTERNAL = tidysq::STD_IT; PROTO = tidysq::RAWS_PT]’: test-pack.cpp:11:5: required from ‘void test_packing_and_unpacking(const tidysq::ProtoSq&) [with INTERNAL_UNPACKED = tidysq::STD_IT; PROTO = tidysq::RAWS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]’ 11 | expect_true(proto_sq == reunpacked); test-pack.cpp:191:5: required from here 168 | test_packing_and_unpacking( \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | create_proto_sq_from_raws(alph_##ALPH_SIZE##_sequences, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | SIMPLE ? alph_##ALPH_SIZE##_simple : alph_##ALPH_SIZE##_multichar) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | ); \ | ~ ../inst/include/tidysq/ProtoSq.h:68:32: warning: comparison of integer expressions of different signedness: ‘tidysq::LenSq’ {aka ‘long int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 68 | for (LenSq i = 0; i < content_.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ ../inst/include/tidysq/ProtoSq.h: In instantiation of ‘bool tidysq::ProtoSq::operator==(const tidysq::ProtoSq&) const [with INTERNAL = tidysq::STD_IT; PROTO = tidysq::INTS_PT]’: test-pack.cpp:11:5: required from ‘void test_packing_and_unpacking(const tidysq::ProtoSq&) [with INTERNAL_UNPACKED = tidysq::STD_IT; PROTO = tidysq::INTS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]’ 11 | expect_true(proto_sq == reunpacked); test-pack.cpp:191:5: required from here 168 | test_packing_and_unpacking( \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | create_proto_sq_from_raws(alph_##ALPH_SIZE##_sequences, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | SIMPLE ? alph_##ALPH_SIZE##_simple : alph_##ALPH_SIZE##_multichar) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | ); \ | ~ ../inst/include/tidysq/ProtoSq.h:68:32: warning: comparison of integer expressions of different signedness: ‘tidysq::LenSq’ {aka ‘long int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 68 | for (LenSq i = 0; i < content_.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ ../inst/include/tidysq/ProtoSq.h: In instantiation of ‘bool tidysq::ProtoSq::operator==(const tidysq::ProtoSq&) const [with INTERNAL = tidysq::STD_IT; PROTO = tidysq::STRINGS_PT]’: test-pack.cpp:11:5: required from ‘void test_packing_and_unpacking(const tidysq::ProtoSq&) [with INTERNAL_UNPACKED = tidysq::STD_IT; PROTO = tidysq::STRINGS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]’ 11 | expect_true(proto_sq == reunpacked); test-pack.cpp:191:5: required from here 168 | test_packing_and_unpacking( \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | create_proto_sq_from_raws(alph_##ALPH_SIZE##_sequences, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | SIMPLE ? alph_##ALPH_SIZE##_simple : alph_##ALPH_SIZE##_multichar) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | ); \ | ~ ../inst/include/tidysq/ProtoSq.h:68:32: warning: comparison of integer expressions of different signedness: ‘tidysq::LenSq’ {aka ‘long int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 68 | for (LenSq i = 0; i < content_.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ ../inst/include/tidysq/ProtoSq.h: In instantiation of ‘bool tidysq::ProtoSq::operator==(const tidysq::ProtoSq&) const [with INTERNAL = tidysq::STD_IT; PROTO = tidysq::STRING_PT]’: test-pack.cpp:11:5: required from ‘void test_packing_and_unpacking(const tidysq::ProtoSq&) [with INTERNAL_UNPACKED = tidysq::STD_IT; PROTO = tidysq::STRING_PT; INTERNAL_PACKED = tidysq::RCPP_IT]’ 11 | expect_true(proto_sq == reunpacked); test-pack.cpp:191:5: required from here 168 | test_packing_and_unpacking( \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | create_proto_sq_from_raws(alph_##ALPH_SIZE##_sequences, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | SIMPLE ? alph_##ALPH_SIZE##_simple : alph_##ALPH_SIZE##_multichar) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | ); \ | ~ ../inst/include/tidysq/ProtoSq.h:68:32: warning: comparison of integer expressions of different signedness: ‘tidysq::LenSq’ {aka ‘long int’} and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 68 | for (LenSq i = 0; i < content_.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include/testthat/testthat.h:72, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include/testthat.h:1, from test-pack.cpp:1: test-pack.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____0()’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include/testthat/testthat.h:180:25: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__) | ^~~~~~~~~~~~~~~ test-pack.cpp:95:1: note: in expansion of macro ‘context’ 95 | context("test-pack") { | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c test-runner.cpp -o test-runner.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c translate.cpp -o translate.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c typify.cpp -o typify.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c unpack.cpp -o unpack.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c write_fasta.cpp -o write_fasta.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o tidysq.so RcppExports.o apply_R_function.o bite.o collapse.o complement.o find_invalid_letters.o find_motifs.o get_standard_alphabet.o guess_standard_alph.o has.o obtain_alphabet.o pack.o paste.o random_sq.o read_fasta.o remove_NA.o remove_ambiguous.o reverse.o sqapply.o substitute_letters.o test-pack.o test-runner.o translate.o typify.o unpack.o write_fasta.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR installing to /home/hornik/tmp/CRAN_special_noSuggests/tidysq.Rcheck/00LOCK-tidysq/00new/tidysq/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidysq)